{"id":"https://openalex.org/W7125581966","doi":"https://doi.org/10.1016/j.jiac.2026.102915","title":"Comprehensive genomic analysis of ESBL- and carbapenemase-producing Escherichia coli ST131 in Japan: Genetic characteristics of pandemic clade C","display_name":"Comprehensive genomic analysis of ESBL- and carbapenemase-producing Escherichia coli ST131 in Japan: Genetic characteristics of pandemic clade C","publication_year":2026,"publication_date":"2026-01-24","ids":{"openalex":"https://openalex.org/W7125581966","doi":"https://doi.org/10.1016/j.jiac.2026.102915","pmid":"https://pubmed.ncbi.nlm.nih.gov/41581600"},"language":"en","primary_location":{"id":"doi:10.1016/j.jiac.2026.102915","doi":"https://doi.org/10.1016/j.jiac.2026.102915","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jiac.2026.102915","pdf_url":null,"source":{"id":"https://openalex.org/S141781860","display_name":"Journal of Infection and Chemotherapy","issn_l":"1341-321X","issn":["1341-321X","1437-7780"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Infection and Chemotherapy","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020064073","display_name":"Akihiro Nakamura","orcid":"https://orcid.org/0000-0003-2065-6720","observed_orcids":["https://orcid.org/0000-0003-2065-6720"]},"institutions":[{"id":"https://openalex.org/I48126063","display_name":"Tenri University","ror":"https://ror.org/00d440w27","country_code":"JP","type":"education","lineage":["https://openalex.org/I48126063"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Akihiro Nakamura","raw_affiliation_strings":["Department of Clinical Laboratory Science, Faculty of Health Care, Tenri University, Tenri, Japan. Electronic address: nakamurium@gmail.com"],"raw_orcid":"https://orcid.org/0000-0003-2065-6720","affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory Science, Faculty of Health Care, Tenri University, Tenri, Japan. Electronic address: nakamurium@gmail.com","institution_ids":["https://openalex.org/I48126063"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123739565","display_name":"Tatsuya Nakamura","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I52765264","display_name":"Kyoto Tachibana University","ror":"https://ror.org/02e2wvy23","country_code":"JP","type":"education","lineage":["https://openalex.org/I52765264"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tatsuya Nakamura","raw_affiliation_strings":["Faculty of Health Sciences, Kyoto Tachibana University, Kyoto, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Health Sciences, Kyoto Tachibana University, Kyoto, Japan","institution_ids":["https://openalex.org/I52765264"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062600801","display_name":"Makoto Niki","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4387152983","display_name":"Osaka Metropolitan University","ror":"https://ror.org/01hvx5h04","country_code":"JP","type":"education","lineage":["https://openalex.org/I4387152983"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Makoto Niki","raw_affiliation_strings":["Department of Infection Control and Prevention, Osaka Metropolitan University Hospital, Osaka, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infection Control and Prevention, Osaka Metropolitan University Hospital, Osaka, Japan","institution_ids":["https://openalex.org/I4387152983"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019944267","display_name":"Tomokazu Kuchibiro","orcid":"https://orcid.org/0000-0002-9290-6031","observed_orcids":["https://orcid.org/0000-0002-9290-6031"]},"institutions":[{"id":"https://openalex.org/I4210114798","display_name":"Naga Municipal Hospital","ror":"https://ror.org/01e0nt744","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210114798"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomokazu Kuchibiro","raw_affiliation_strings":["Department of Clinical Laboratory, Naga Municipal Hospital, Wakayama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory, Naga Municipal Hospital, Wakayama, Japan","institution_ids":["https://openalex.org/I4210114798"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058136716","display_name":"Katsutoshi Yamasaki","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I90304302","display_name":"Kurashiki University of Science and the Arts","ror":"https://ror.org/04xtvq436","country_code":"JP","type":"education","lineage":["https://openalex.org/I90304302"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Katsutoshi Yamasaki","raw_affiliation_strings":["Department of Medical Life Science, Kurashiki University of Science and the Arts, Okayama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Life Science, Kurashiki University of Science and the Arts, Okayama, Japan","institution_ids":["https://openalex.org/I90304302"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064441779","display_name":"Masaru Komatsu","orcid":"https://orcid.org/0000-0002-5505-0406","observed_orcids":["https://orcid.org/0000-0002-5505-0406"]},"institutions":[{"id":"https://openalex.org/I48126063","display_name":"Tenri University","ror":"https://ror.org/00d440w27","country_code":"JP","type":"education","lineage":["https://openalex.org/I48126063"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaru Komatsu","raw_affiliation_strings":["Department of Clinical Laboratory Science, Faculty of Health Care, Tenri University, Tenri, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical Laboratory Science, Faculty of Health Care, Tenri University, Tenri, Japan","institution_ids":["https://openalex.org/I48126063"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5020064073"],"corresponding_institution_ids":["https://openalex.org/I48126063"],"apc_list":{"value":2650,"currency":"USD","value_usd":2650},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"32","issue":"2","first_page":"102915","last_page":"102915"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.013399999588727951,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/escherichia-coli-st131","display_name":"Escherichia coli ST131","score":0.9449999928474426},{"id":"https://openalex.org/keywords/clade-c","display_name":"clade C","score":0.859000027179718},{"id":"https://openalex.org/keywords/extended-spectrum-beta-lactamase","display_name":"extended-spectrum beta-lactamase","score":0.8809999823570251},{"id":"https://openalex.org/keywords/carbapenemase","display_name":"carbapenemase","score":0.9710000157356262},{"id":"https://openalex.org/keywords/chromosome-structural-variation","display_name":"chromosome structural variation","score":0.746999979019165},{"id":"https://openalex.org/keywords/aaa-proteins","display_name":"AAA+ ATPase","score":0.8859999775886536},{"id":"https://openalex.org/keywords/antimicrobial-resistance-genes","display_name":"antimicrobial resistance genes","score":0.8109999895095825},{"id":"https://openalex.org/keywords/nosocomial-infections","display_name":"nosocomial infections","score":0.5709999799728394},{"id":"https://openalex.org/keywords/japan","display_name":"Japan","score":0.30799999833106995}],"concepts":[{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.8640999794006348},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7416999936103821},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.6868000030517578},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.5094000101089478},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4876999855041504},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4456999897956848},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.41620001196861267},{"id":"https://openalex.org/C2781009140","wikidata":"https://www.wikidata.org/wiki/Q7170389","display_name":"Persistence (discontinuity)","level":2,"score":0.414900004863739},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3889999985694885},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34529998898506165},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.32670000195503235},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.31540000438690186},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.31299999356269836},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3075999915599823},{"id":"https://openalex.org/C110121322","wikidata":"https://www.wikidata.org/wiki/Q865811","display_name":"Distribution (mathematics)","level":2,"score":0.299699991941452},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.2883000075817108},{"id":"https://openalex.org/C180223184","wikidata":"https://www.wikidata.org/wiki/Q4839986","display_name":"Bacterial genetics","level":4,"score":0.2818000018596649},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.26750001311302185},{"id":"https://openalex.org/C23085057","wikidata":"https://www.wikidata.org/wiki/Q5532877","display_name":"Genetic analysis","level":3,"score":0.26739999651908875},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.26739999651908875},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.26489999890327454},{"id":"https://openalex.org/C190139176","wikidata":"https://www.wikidata.org/wiki/Q598976","display_name":"Medical microbiology","level":2,"score":0.26429998874664307}],"mesh":[{"descriptor_ui":"D000073336","descriptor_name":"Whole Genome Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007564","descriptor_name":"Japan","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008826","descriptor_name":"Microbial Sensitivity Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D024901","descriptor_name":"Drug Resistance, Multiple, Bacterial","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D037521","descriptor_name":"Virulence Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.jiac.2026.102915","doi":"https://doi.org/10.1016/j.jiac.2026.102915","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jiac.2026.102915","pdf_url":null,"source":{"id":"https://openalex.org/S141781860","display_name":"Journal of Infection and Chemotherapy","issn_l":"1341-321X","issn":["1341-321X","1437-7780"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Infection and Chemotherapy","raw_type":"journal-article"},{"id":"pmid:41581600","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41581600","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of infection and chemotherapy : official journal of the Japan Society of Chemotherapy","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.9476000070571899,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G8172206397","display_name":"Biofilm formation and gastric acid resistance capacity in antimicrobial-resistant E. coli ST131.","funder_award_id":"21K08499","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1538888880","https://openalex.org/W1971278921","https://openalex.org/W1989757746","https://openalex.org/W2014151922","https://openalex.org/W2032945470","https://openalex.org/W2037378264","https://openalex.org/W2096911890","https://openalex.org/W2098716491","https://openalex.org/W2120099428","https://openalex.org/W2121997159","https://openalex.org/W2126141540","https://openalex.org/W2139852129","https://openalex.org/W2143046682","https://openalex.org/W2158990411","https://openalex.org/W2160558336","https://openalex.org/W2169550448","https://openalex.org/W2201496742","https://openalex.org/W2405647782","https://openalex.org/W2527109340","https://openalex.org/W2584306356","https://openalex.org/W2592954192","https://openalex.org/W2622659147","https://openalex.org/W2888936584","https://openalex.org/W2922563085","https://openalex.org/W2937552023","https://openalex.org/W2947016978","https://openalex.org/W2950888461","https://openalex.org/W3184815473","https://openalex.org/W3188690941","https://openalex.org/W3194870248"],"related_works":["https://openalex.org/W4401891391","https://openalex.org/W2527109340","https://openalex.org/W3013262139","https://openalex.org/W2956898636","https://openalex.org/W2972308354","https://openalex.org/W2766145863","https://openalex.org/W2622659147","https://openalex.org/W2991355563","https://openalex.org/W4411080359","https://openalex.org/W2543955974"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2026-01-25T00:00:00"}
