{"id":"https://openalex.org/W7125220132","doi":"https://doi.org/10.3390/fishes11010065","title":"Cooperative Associations Between Fishes and Bacteria: The Influence of Different Ocean Fishes on the Gut Microbiota Composition","display_name":"Cooperative Associations Between Fishes and Bacteria: The Influence of Different Ocean Fishes on the Gut Microbiota Composition","publication_year":2026,"publication_date":"2026-01-21","ids":{"openalex":"https://openalex.org/W7125220132","doi":"https://doi.org/10.3390/fishes11010065"},"language":"en","primary_location":{"id":"doi:10.3390/fishes11010065","doi":"https://doi.org/10.3390/fishes11010065","is_oa":true,"landing_page_url":"https://doi.org/10.3390/fishes11010065","pdf_url":"https://www.mdpi.com/2410-3888/11/1/65/pdf?version=1768983170","source":{"id":"https://openalex.org/S4210229736","display_name":"Fishes","issn_l":"2410-3888","issn":["2410-3888"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fishes","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2410-3888/11/1/65/pdf?version=1768983170","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086167324","display_name":"J. Z. Liu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jintao Liu","raw_affiliation_strings":["College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China","institution_ids":["https://openalex.org/I44675526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057135637","display_name":"B. Liu","orcid":"https://orcid.org/0000-0002-0701-0741","observed_orcids":["https://orcid.org/0000-0002-0701-0741"]},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bilin Liu","raw_affiliation_strings":["College of Marine Living Resource Sciences and Management, Shanghai Ocean University, Shanghai 201306, China"],"raw_orcid":"https://orcid.org/0000-0002-0701-0741","affiliations":[{"raw_affiliation_string":"College of Marine Living Resource Sciences and Management, Shanghai Ocean University, Shanghai 201306, China","institution_ids":["https://openalex.org/I44675526"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015362452","display_name":"Yang Liu","orcid":"https://orcid.org/0000-0002-4567-9403","observed_orcids":["https://orcid.org/0000-0002-4567-9403"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang Liu","raw_affiliation_strings":["Marine Biomedical Science and Technology Innovation Platform of Lingang Special Area, Shanghai 201306, China"],"raw_orcid":"https://orcid.org/0000-0002-4567-9403","affiliations":[{"raw_affiliation_string":"Marine Biomedical Science and Technology Innovation Platform of Lingang Special Area, Shanghai 201306, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110388549","display_name":"Yuli Wei","orcid":"https://orcid.org/0000-0002-0282-5802","observed_orcids":["https://orcid.org/0000-0002-0282-5802"]},"institutions":[{"id":"https://openalex.org/I44675526","display_name":"Shanghai Ocean University","ror":"https://ror.org/04n40zv07","country_code":"CN","type":"education","lineage":["https://openalex.org/I44675526"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yuli Wei","raw_affiliation_strings":["College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China","Marine Biomedical Science and Technology Innovation Platform of Lingang Special Area, Shanghai 201306, China"],"raw_orcid":"https://orcid.org/0000-0002-0282-5802","affiliations":[{"raw_affiliation_string":"College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai 201306, China","institution_ids":["https://openalex.org/I44675526"]},{"raw_affiliation_string":"Marine Biomedical Science and Technology Innovation Platform of Lingang Special Area, Shanghai 201306, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5057135637","https://openalex.org/A5110388549"],"corresponding_institution_ids":["https://openalex.org/I44675526"],"apc_list":{"value":2600,"currency":"CHF","value_usd":3137},"apc_paid":{"value":2600,"currency":"CHF","value_usd":3137},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03263943,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"11","issue":"1","first_page":"65","last_page":"65"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10506","display_name":"Aquaculture disease management and microbiota","score":0.9603999853134155,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10506","display_name":"Aquaculture disease management and microbiota","score":0.9603999853134155,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.028300000354647636,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.006300000008195639,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gut-microbiota","display_name":"gut microbiota","score":0.8460000157356262},{"id":"https://openalex.org/keywords/marine-fish","display_name":"marine fish","score":0.9100000262260437},{"id":"https://openalex.org/keywords/cross-species-comparison","display_name":"cross-species comparison","score":0.7789999842643738},{"id":"https://openalex.org/keywords/photobacterium","display_name":"Photobacterium","score":0.9580000042915344},{"id":"https://openalex.org/keywords/pelomonas","display_name":"Pelomonas","score":0.9079999923706055},{"id":"https://openalex.org/keywords/ralstonia","display_name":"Ralstonia","score":0.9139999747276306},{"id":"https://openalex.org/keywords/rhodococcus","display_name":"Rhodococcus","score":0.9990000128746033},{"id":"https://openalex.org/keywords/blue-shark","display_name":"Prionace glauca","score":0.9020000100135803},{"id":"https://openalex.org/keywords/bigeye-tuna","display_name":"bigeye tuna","score":0.984000027179718},{"id":"https://openalex.org/keywords/japanese-mackerel","display_name":"Japanese mackerel","score":0.9240000247955322},{"id":"https://openalex.org/keywords/microbial-functional-pathways","display_name":"microbial functional pathways","score":0.6259999871253967},{"id":"https://openalex.org/keywords/amino-acid-biosynthesis","display_name":"amino acid biosynthesis","score":0.765999972820282},{"id":"https://openalex.org/keywords/abc-transporters","display_name":"ABC transporters","score":0.8989999890327454},{"id":"https://openalex.org/keywords/two-component-systems","display_name":"two-component systems","score":0.9890000224113464},{"id":"https://openalex.org/keywords/host-microbe-interactions","display_name":"host-microbe interactions","score":0.6579999923706055},{"id":"https://openalex.org/keywords/inter-individual-variability","display_name":"interindividual variability","score":0.6340000033378601}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8917999863624573},{"id":"https://openalex.org/C122325731","wikidata":"https://www.wikidata.org/wiki/Q3738459","display_name":"Relative species abundance","level":3,"score":0.5267000198364258},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.5005000233650208},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.4902999997138977},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.4830999970436096},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.41940000653266907},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.3808000087738037},{"id":"https://openalex.org/C63644423","wikidata":"https://www.wikidata.org/wiki/Q338562","display_name":"Interspecific competition","level":2,"score":0.36719998717308044},{"id":"https://openalex.org/C2992957956","wikidata":"https://www.wikidata.org/wiki/Q5364423","display_name":"Marine fish","level":3,"score":0.36079999804496765},{"id":"https://openalex.org/C77077793","wikidata":"https://www.wikidata.org/wiki/Q336019","display_name":"Abundance (ecology)","level":2,"score":0.36070001125335693},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.3521000146865845},{"id":"https://openalex.org/C2780532849","wikidata":"https://www.wikidata.org/wiki/Q6146274","display_name":"Tuna","level":3,"score":0.3260999917984009},{"id":"https://openalex.org/C101014631","wikidata":"https://www.wikidata.org/wiki/Q4889568","display_name":"Microbial metabolism","level":3,"score":0.3249000012874603},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.31060001254081726},{"id":"https://openalex.org/C2779676784","wikidata":"https://www.wikidata.org/wiki/Q130999","display_name":"Proteobacteria","level":4,"score":0.30630001425743103},{"id":"https://openalex.org/C2777406646","wikidata":"https://www.wikidata.org/wiki/Q8064278","display_name":"Mackerel","level":3,"score":0.28290000557899475},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.2775000035762787},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.26899999380111694},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.2587999999523163}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.3390/fishes11010065","doi":"https://doi.org/10.3390/fishes11010065","is_oa":true,"landing_page_url":"https://doi.org/10.3390/fishes11010065","pdf_url":"https://www.mdpi.com/2410-3888/11/1/65/pdf?version=1768983170","source":{"id":"https://openalex.org/S4210229736","display_name":"Fishes","issn_l":"2410-3888","issn":["2410-3888"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fishes","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:5bb1910024ab4f04872961ce5e63e5ae","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/5bb1910024ab4f04872961ce5e63e5ae","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fishes, Vol 11, Iss 1, p 65 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/fishes11010065","doi":"https://doi.org/10.3390/fishes11010065","is_oa":true,"landing_page_url":"https://doi.org/10.3390/fishes11010065","pdf_url":"https://www.mdpi.com/2410-3888/11/1/65/pdf?version=1768983170","source":{"id":"https://openalex.org/S4210229736","display_name":"Fishes","issn_l":"2410-3888","issn":["2410-3888"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fishes","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":1.0}],"sustainable_development_goals_aurora":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.7663511037826538}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7125220132.pdf","grobid_xml":"https://content.openalex.org/works/W7125220132.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1130588615","https://openalex.org/W1977591727","https://openalex.org/W1994380103","https://openalex.org/W2051170514","https://openalex.org/W2110235509","https://openalex.org/W2110936821","https://openalex.org/W2113802339","https://openalex.org/W2127175247","https://openalex.org/W2178356857","https://openalex.org/W2263874189","https://openalex.org/W2407481069","https://openalex.org/W2576326800","https://openalex.org/W2590867687","https://openalex.org/W2602243360","https://openalex.org/W2741961591","https://openalex.org/W2762032929","https://openalex.org/W2767663987","https://openalex.org/W2777088958","https://openalex.org/W2900697674","https://openalex.org/W2972489154","https://openalex.org/W3128922103","https://openalex.org/W3132450255","https://openalex.org/W3192256831","https://openalex.org/W3200189415","https://openalex.org/W4213371975","https://openalex.org/W4244719605","https://openalex.org/W4323926055","https://openalex.org/W4362470157","https://openalex.org/W4396867475","https://openalex.org/W4399895890"],"related_works":[],"abstract_inverted_index":{"Gut":[0],"microbial":[1,31,52,74,106,152,168,207,258],"communities":[2,32,53,75],"perform":[3],"a":[4,41,123,179,282],"multitude":[5],"of":[6,18,28,54,57,72,86,130,157,182,203,214,230,291],"physiological":[7],"functions":[8],"for":[9],"their":[10],"hosts;":[11],"however,":[12],"the":[13,50,67,82,127,140,155,194,210,215,239,270,278,287],"drivers":[14],"and":[15,69,99,111,145,164,175,190,206,235,275],"distribution":[16],"patterns":[17],"microbiota":[19,84,217,280],"in":[20,37,167,218,256,277,285],"wild":[21],"animals":[22],"remain":[23],"largely":[24],"underexplored.":[25],"Our":[26],"understanding":[27],"how":[29],"these":[30,73,131,158,252,292],"are":[33,238],"structured":[34],"across":[35,76,116,247],"hosts":[36],"natural":[38],"environments\u2014especially":[39],"within":[40,193],"single":[42],"host":[43],"species":[44,56,196],"remains":[45],"limited.":[46],"Here,":[47],"we":[48,103],"characterized":[49],"gut":[51,83,257,279],"four":[55],"ocean":[58],"fish":[59,78,249,262,293],"using":[60],"16S":[61],"rRNA":[62],"high-throughput":[63],"sequencing":[64],"to":[65],"investigate":[66],"structural":[68],"functional":[70,212,241],"features":[71],"different":[77,248,261],"species.":[79,250,294],"By":[80],"comparing":[81],"compositions":[85],"blue":[87],"sharks":[88,144],"(Prionace":[89],"glauca),":[90],"bigeye":[91,146],"tuna":[92,147],"(Thunnus":[93],"obesus),":[94],"sickle":[95,176],"pomfret":[96,177],"(Taractichthys":[97],"steindachneri),":[98],"mackerel":[100,174],"(Scomber":[101],"japonicus),":[102],"identified":[104],"several":[105],"taxa\u2014including":[107],"Photobacterium,":[108],"Pelomonas,":[109],"Ralstonia,":[110],"Rhodococcus\u2014that":[112],"were":[113,170,197],"consistently":[114],"detected":[115],"all":[117],"samples,":[118],"indicating":[119],"they":[120],"likely":[121],"constitute":[122],"\u201ccommon":[124],"microbiota\u201d.":[125],"However,":[126],"relative":[128,188],"abundances":[129],"taxa":[132],"varied":[133],"significantly":[134],"among":[135,260],"species,":[136,153],"with":[137,186,221,269],"Photobacterium":[138],"exhibiting":[139],"highest":[141],"diversity.":[142],"Blue":[143],"harbored":[148],"relatively":[149],"few":[150],"dominant":[151,159,183],"but":[154],"abundance":[156],"bacteria":[160],"was":[161],"remarkably":[162],"high,":[163],"inter-individual":[165,191],"differences":[166,192,225,255],"composition":[169],"pronounced.":[171],"In":[172,227],"contrast,":[173,228],"contained":[178],"greater":[180],"variety":[181],"genera,":[184],"each":[185],"low":[187],"abundance,":[189],"same":[195],"minimal.":[198],"Functionally,":[199],"metabolic":[200],"pathways,":[201],"biosynthesis":[202,229],"secondary":[204],"metabolites,":[205],"metabolism":[208],"represent":[209],"predominant":[211],"categories":[213],"intestinal":[216],"marine":[219],"fish,":[220],"only":[222],"minor":[223],"interspecific":[224],"observed.":[226],"amino":[231],"acids,":[232],"ABC":[233],"transporters,":[234],"two-component":[236],"systems":[237],"key":[240],"pathways":[242],"that":[243],"exhibit":[244],"significant":[245],"variations":[246,265],"Collectively,":[251],"findings":[253],"reveal":[254],"stability":[259],"hosts.":[263],"Such":[264],"may":[266],"be":[267],"associated":[268],"hosts\u2019":[271],"energy":[272],"utilization":[273],"needs,":[274],"changes":[276],"play":[281],"critical":[283],"role":[284],"shaping":[286],"diverse":[288],"survival":[289],"strategies":[290]},"counts_by_year":[],"updated_date":"2026-09-21T07:43:02.447757","created_date":"2026-01-22T00:00:00"}
