{"id":"https://openalex.org/W7118200727","doi":"https://doi.org/10.1080/23802359.2025.2573760","title":"The complete chloroplast genome and phylogenetic analysis of Fraxinus paxiana Lingelsh. 1907 (Oleaceae)","display_name":"The complete chloroplast genome and phylogenetic analysis of Fraxinus paxiana Lingelsh. 1907 (Oleaceae)","publication_year":2026,"publication_date":"2026-01-05","ids":{"openalex":"https://openalex.org/W7118200727","doi":"https://doi.org/10.1080/23802359.2025.2573760","pmid":"https://pubmed.ncbi.nlm.nih.gov/41509592"},"language":"en","primary_location":{"id":"doi:10.1080/23802359.2025.2573760","doi":"https://doi.org/10.1080/23802359.2025.2573760","is_oa":true,"landing_page_url":"https://doi.org/10.1080/23802359.2025.2573760","pdf_url":null,"source":{"id":"https://openalex.org/S2764892991","display_name":"Mitochondrial DNA Part B","issn_l":"2380-2359","issn":["2380-2359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part B","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1080/23802359.2025.2573760","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061602078","display_name":"Hong Xin Feng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I12411659","display_name":"Tianjin University of Traditional Chinese Medicine","ror":"https://ror.org/05dfcz246","country_code":"CN","type":"education","lineage":["https://openalex.org/I12411659"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong Feng","raw_affiliation_strings":["School of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine","institution_ids":["https://openalex.org/I12411659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121950672","display_name":"Wei Sun","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210141683","display_name":"China Academy of Chinese Medical Sciences","ror":"https://ror.org/042pgcv68","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210141683"]},{"id":"https://openalex.org/I4392738151","display_name":"Institute of Chinese Materia Medica","ror":"https://ror.org/04kn56m50","country_code":null,"type":"facility","lineage":["https://openalex.org/I200296433","https://openalex.org/I4392738151"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Sun","raw_affiliation_strings":["Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine","Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herb"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine","institution_ids":["https://openalex.org/I4210141683","https://openalex.org/I4392738151"]},{"raw_affiliation_string":"Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herb","institution_ids":["https://openalex.org/I4210141683","https://openalex.org/I4392738151"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084535940","display_name":"XiangXiao Meng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210141683","display_name":"China Academy of Chinese Medical Sciences","ror":"https://ror.org/042pgcv68","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210141683"]},{"id":"https://openalex.org/I4392738151","display_name":"Institute of Chinese Materia Medica","ror":"https://ror.org/04kn56m50","country_code":null,"type":"facility","lineage":["https://openalex.org/I200296433","https://openalex.org/I4392738151"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangxiao Meng","raw_affiliation_strings":["Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine","Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herb"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Key Laboratory of Beijing for Identification and Safety Evaluation of Chinese Medicine","institution_ids":["https://openalex.org/I4210141683","https://openalex.org/I4392738151"]},{"raw_affiliation_string":"Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, State Key Laboratory for Quality Ensurance and Sustainable Use of Dao-di Herb","institution_ids":["https://openalex.org/I4210141683","https://openalex.org/I4392738151"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5137367343","display_name":"Shilin Chen","orcid":"https://orcid.org/0000-0002-0449-236X","observed_orcids":["https://orcid.org/0000-0002-0449-236X"]},"institutions":[{"id":"https://openalex.org/I12411659","display_name":"Tianjin University of Traditional Chinese Medicine","ror":"https://ror.org/05dfcz246","country_code":"CN","type":"education","lineage":["https://openalex.org/I12411659"]},{"id":"https://openalex.org/I53411278","display_name":"Chengdu University of Traditional Chinese Medicine","ror":"https://ror.org/00pcrz470","country_code":"CN","type":"education","lineage":["https://openalex.org/I53411278"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shilin Chen","raw_affiliation_strings":["Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine","School of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Herbgenomics, Chengdu University of Traditional Chinese Medicine","institution_ids":["https://openalex.org/I53411278"]},{"raw_affiliation_string":"School of Chinese Materia Medica, Tianjin University of Traditional Chinese Medicine","institution_ids":["https://openalex.org/I12411659"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5137367343"],"corresponding_institution_ids":["https://openalex.org/I12411659","https://openalex.org/I53411278"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00840383,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"11","issue":"2","first_page":"232","last_page":"236"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.8363999724388123,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.8363999724388123,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13168","display_name":"Plant Ecology and Taxonomy Studies","score":0.12269999831914902,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.016499999910593033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chloroplast-genome","display_name":"chloroplast genome","score":0.875},{"id":"https://openalex.org/keywords/phylogenetic-relationships","display_name":"phylogenetic relationships","score":0.6460000276565552},{"id":"https://openalex.org/keywords/fraxinus","display_name":"Fraxinus","score":0.7739999890327454},{"id":"https://openalex.org/keywords/traditional-chinese-medicine","display_name":"traditional Chinese medicine","score":0.8880000114440918},{"id":"https://openalex.org/keywords/microsatellite-markers","display_name":"microsatellite markers","score":0.6759999990463257},{"id":"https://openalex.org/keywords/mononucleotide-repeats","display_name":"mononucleotide repeats","score":0.8690000176429749},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.42500001192092896}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8586000204086304},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7778000235557556},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6929000020027161},{"id":"https://openalex.org/C2992072516","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetic relationship","level":4,"score":0.5870000123977661},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.5313000082969666},{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.527999997138977},{"id":"https://openalex.org/C2779567708","wikidata":"https://www.wikidata.org/wiki/Q1658591","display_name":"Adulterant","level":2,"score":0.5152000188827515},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5056999921798706},{"id":"https://openalex.org/C157369684","wikidata":"https://www.wikidata.org/wiki/Q34740","display_name":"Genus","level":2,"score":0.49050000309944153},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.46380001306533813},{"id":"https://openalex.org/C69305403","wikidata":"https://www.wikidata.org/wiki/Q47263","display_name":"Chloroplast","level":3,"score":0.46299999952316284},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.45320001244544983},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4316999912261963},{"id":"https://openalex.org/C42251679","wikidata":"https://www.wikidata.org/wiki/Q933491","display_name":"GC-content","level":4,"score":0.3698999881744385},{"id":"https://openalex.org/C198260499","wikidata":"https://www.wikidata.org/wiki/Q2976606","display_name":"Phylogenetic nomenclature","level":5,"score":0.3682999908924103},{"id":"https://openalex.org/C48050816","wikidata":"https://www.wikidata.org/wiki/Q3182853","display_name":"Chloroplast DNA","level":4,"score":0.32829999923706055},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.2888000011444092},{"id":"https://openalex.org/C106337198","wikidata":"https://www.wikidata.org/wiki/Q13564012","display_name":"Illumina dye sequencing","level":4,"score":0.2786000072956085},{"id":"https://openalex.org/C24586158","wikidata":"https://www.wikidata.org/wiki/Q27075","display_name":"Mitochondrial DNA","level":3,"score":0.26570001244544983}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1080/23802359.2025.2573760","doi":"https://doi.org/10.1080/23802359.2025.2573760","is_oa":true,"landing_page_url":"https://doi.org/10.1080/23802359.2025.2573760","pdf_url":null,"source":{"id":"https://openalex.org/S2764892991","display_name":"Mitochondrial DNA Part B","issn_l":"2380-2359","issn":["2380-2359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part B","raw_type":"journal-article"},{"id":"pmid:41509592","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41509592","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA. Part B, Resources","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12777748","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12777748/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Mitochondrial DNA B Resour","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:716ab7c630ee46fcb92572a56c450c30","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/716ab7c630ee46fcb92572a56c450c30","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Mitochondrial DNA. Part B. Resources, Vol 11, Iss 2, Pp 232-236 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1080/23802359.2025.2573760","doi":"https://doi.org/10.1080/23802359.2025.2573760","is_oa":true,"landing_page_url":"https://doi.org/10.1080/23802359.2025.2573760","pdf_url":null,"source":{"id":"https://openalex.org/S2764892991","display_name":"Mitochondrial DNA Part B","issn_l":"2380-2359","issn":["2380-2359"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part B","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G7792709461","display_name":null,"funder_award_id":"ZXKT22051","funder_id":"https://openalex.org/F4320338200","funder_display_name":"Central Public Research Institutes Basic Funds for Research and Development"},{"id":"https://openalex.org/G9000189690","display_name":null,"funder_award_id":"2023YFC3504104","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320338200","display_name":"Central Public Research Institutes Basic Funds for Research and Development","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W2108234281","https://openalex.org/W2160378127","https://openalex.org/W2333526373","https://openalex.org/W2770279710","https://openalex.org/W2783128684","https://openalex.org/W2898235658","https://openalex.org/W2925937384","https://openalex.org/W2944710594","https://openalex.org/W2945011990","https://openalex.org/W2951912016","https://openalex.org/W2953289982","https://openalex.org/W3005235420","https://openalex.org/W3084201551","https://openalex.org/W3092903159","https://openalex.org/W3094444980","https://openalex.org/W4313424532","https://openalex.org/W4318819283","https://openalex.org/W4360819779","https://openalex.org/W4399915094","https://openalex.org/W4401851240","https://openalex.org/W4405656217","https://openalex.org/W4408386492","https://openalex.org/W4410033444"],"related_works":[],"abstract_inverted_index":{"Fraxinus":[0,79],"paxiana":[1,87],"distributed":[2],"in":[3,17],"Shaanxi,":[4],"Gansu,":[5],"Hubei,":[6],"Hunan,":[7],"and":[8,19,60,88],"Sichuan":[9],"provinces,":[10],"is":[11,80],"used":[12],"as":[13,22],"a":[14,42],"local":[15],"medicine":[16,28],"Shaanxi":[18],"also":[20],"serves":[21],"an":[23],"adulterant":[24],"of":[25,48,70],"traditional":[26],"Chinese":[27],"Qinpi.":[29],"Here,":[30],"we":[31],"assembled":[32],"its":[33],"155,692":[34],"bp":[35],"chloroplast":[36],"genome":[37],"(GC":[38],"content":[39],"37.87%)":[40],"with":[41,85],"typical":[43],"quadripartite":[44],"structure.":[45],"A":[46],"total":[47],"133":[49],"genes":[50],"were":[51],"annotated,":[52],"including":[53],"88":[54],"protein-coding":[55],"genes,":[56,59],"37":[57],"tRNA":[58],"eight":[61],"rRNA":[62],"genes.":[63],"We":[64],"identified":[65],"43":[66],"SSRs,":[67],"predominantly":[68],"composed":[69],"mononucleotide":[71],"repeats.":[72],"Phylogenetic":[73],"analysis":[74],"showed":[75],"that":[76],"the":[77,92],"genus":[78],"divided":[81],"into":[82],"two":[83],"branches,":[84],"F.":[86,89],"insularis":[90],"having":[91],"closest":[93],"phylogenetic":[94],"relationship.":[95]},"counts_by_year":[],"updated_date":"2026-09-26T08:19:03.415552","created_date":"2026-01-05T00:00:00"}
