{"id":"https://openalex.org/W7117246382","doi":"https://doi.org/10.5281/zenodo.18047851","title":"System of Pathology Agents for Research and Knowledge (SPARK): code, parameters and reference books for parameters","display_name":"System of Pathology Agents for Research and Knowledge (SPARK): code, parameters and reference books for parameters","publication_year":2025,"publication_date":"2025-12-24","ids":{"openalex":"https://openalex.org/W7117246382","doi":"https://doi.org/10.5281/zenodo.18047851"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.18047851","doi":"https://doi.org/10.5281/zenodo.18047851","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18047851","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"},"volume":null,"type":"other","is_traditional":false,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.18047851","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5121278147","display_name":"Yuri Tolkach","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Tolkach, Yuri","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5121278147"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.004600000102072954,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11636","display_name":"Artificial Intelligence in Healthcare and Education","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/2718","display_name":"Health Informatics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pathology","display_name":"pathology","score":0.31200000643730164},{"id":"https://openalex.org/keywords/autonomous-scientific-discovery","display_name":"autonomous scientific discovery","score":0.7329999804496765},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"digital pathology","score":0.5559999942779541},{"id":"https://openalex.org/keywords/python-functions","display_name":"Python functions","score":0.5049999952316284}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.725600004196167},{"id":"https://openalex.org/C2781215313","wikidata":"https://www.wikidata.org/wiki/Q3493345","display_name":"SPARK (programming language)","level":2,"score":0.7142000198364258},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6586999893188477},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.5863999724388123},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.45879998803138733},{"id":"https://openalex.org/C2984917352","wikidata":"https://www.wikidata.org/wiki/Q12772819","display_name":"Scientific discovery","level":2,"score":0.43810001015663147},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42010000348091125},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3984000086784363},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.2867000102996826},{"id":"https://openalex.org/C2781083858","wikidata":"https://www.wikidata.org/wiki/Q17327049","display_name":"Scientific literature","level":2,"score":0.27649998664855957},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2750999927520752},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.260699987411499},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.25540000200271606}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.18047851","doi":"https://doi.org/10.5281/zenodo.18047851","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18047851","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"},{"id":"doi:10.5281/zenodo.18047852","doi":"https://doi.org/10.5281/zenodo.18047852","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18047852","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"}],"best_oa_location":{"id":"doi:10.5281/zenodo.18047851","doi":"https://doi.org/10.5281/zenodo.18047851","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.18047851","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W6912835520","https://openalex.org/W4393531069","https://openalex.org/W7095006289","https://openalex.org/W6948563216","https://openalex.org/W7005422719","https://openalex.org/W7017488161","https://openalex.org/W7095519895","https://openalex.org/W6907534892","https://openalex.org/W2394712474","https://openalex.org/W2902302604"],"abstract_inverted_index":{"This":[0],"repositorium":[1],"contains":[2],"accompanying":[3,30],"information":[4],"to":[5,39,105],"SPARK":[6,27,41,54,66,115],"pipeline:":[7],"\"System":[8,131],"of":[9,26,52,64,73,78,91,119,132],"Pathology":[10,133],"Agents":[11,134],"for":[12,57,84,135],"Research":[13,136],"and":[14,29,46,108,117,122,137],"Knowledge":[15,138],"(SPARK):":[16,139],"Autonomous":[17,140],"Scientific":[18,141],"Discovery":[19,142],"in":[20,143],"Pathology\"":[21,144],"1.":[22],"SPARK-main.zip":[23],"Full":[24],"code":[25],"pipeline":[28,116],"WSI":[31],"processing":[32],"pipelines.":[33],"2.":[34],"SPARK_parameter_html_books.zip":[35],"Detailed":[36],"reference":[37],"books":[38],"all":[40],"parameters":[42,67,93],"with":[43],"easy":[44],"navigation":[45],"search":[47],"function.":[48],"3.":[49],"SPARK_database_refined_ideas_all_use_cases.zip":[50],"Database":[51,77],"refined":[53,79],"ideas":[55,82],"(input":[56,83],"coding":[58,85],"pipeline),":[59,86],"4.":[60],"SPARK_parameter_python_functions.zip":[61],"Separate":[62,89],"archive":[63,90],"coded":[65,92,123],"as":[68,97],"Python":[69,98],"functions":[70],"(also":[71],"part":[72],"SPARK-main.zip)":[74],"5.":[75],"SPARK_human_pathologists_idea_database.zip":[76],"human":[80],"pathologists'":[81,95],"6.":[87],"SPARK_human_pathologists_python_functions.zip":[88],"(human":[94],"ideas)":[96],"functions.":[99],"For":[100,113],"more":[101],"details,":[102],"please":[103],"refer":[104],"original":[106,126],"publication":[107,127],"the":[109,125],"GitHub":[110],"repository:":[111],"https://github.com/cpath-ukk/SPARK":[112],"using":[114],"any":[118],"its":[120],"components":[121],"parameters,":[124],"must":[128],"be":[129],"cited:":[130],"[Journal,":[145],"Year]":[146],"[Paper":[147],"DOI]":[148]},"counts_by_year":[],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2025-12-25T00:00:00"}
