{"id":"https://openalex.org/W7108201312","doi":"https://doi.org/10.5281/zenodo.17780287","title":"coralquiz: A Shiny app for coral identification practice and quizzes","display_name":"coralquiz: A Shiny app for coral identification practice and quizzes","publication_year":2025,"publication_date":"2025-12-01","ids":{"openalex":"https://openalex.org/W7108201312","doi":"https://doi.org/10.5281/zenodo.17780287"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.17780287","doi":"https://doi.org/10.5281/zenodo.17780287","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17780287","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"volume":null,"type":"software","is_traditional":false,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17780287","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106186179","display_name":"Matthew Louis Doherty","orcid":"https://orcid.org/0009-0000-6259-3006","observed_orcids":["https://orcid.org/0009-0000-6259-3006"]},"institutions":[{"id":"https://openalex.org/I897542642","display_name":"University of Plymouth","ror":"https://ror.org/008n7pv89","country_code":"GB","type":"education","lineage":["https://openalex.org/I897542642"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Doherty, Matthew L.","raw_affiliation_strings":["University of Plymouth, School of Biological and Marine Sciences"],"raw_orcid":"https://orcid.org/0009-0000-6259-3006","affiliations":[{"raw_affiliation_string":"University of Plymouth, School of Biological and Marine Sciences","institution_ids":["https://openalex.org/I897542642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148040243","display_name":"Browne Isabelle P. A.","orcid":"https://orcid.org/0009-0002-4396-3926","observed_orcids":["https://orcid.org/0009-0002-4396-3926"]},"institutions":[{"id":"https://openalex.org/I897542642","display_name":"University of Plymouth","ror":"https://ror.org/008n7pv89","country_code":"GB","type":"education","lineage":["https://openalex.org/I897542642"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Isabelle P. A., Browne","raw_affiliation_strings":["University of Plymouth, School of Biological and Marine Sciences"],"raw_orcid":"https://orcid.org/0009-0002-4396-3926","affiliations":[{"raw_affiliation_string":"University of Plymouth, School of Biological and Marine Sciences","institution_ids":["https://openalex.org/I897542642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148033055","display_name":"Coughlan Erin N.","orcid":"https://orcid.org/0009-0000-5718-0426","observed_orcids":["https://orcid.org/0009-0000-5718-0426"]},"institutions":[{"id":"https://openalex.org/I897542642","display_name":"University of Plymouth","ror":"https://ror.org/008n7pv89","country_code":"GB","type":"education","lineage":["https://openalex.org/I897542642"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Erin N., Coughlan","raw_affiliation_strings":["University of Plymouth, School of Biological and Marine Sciences"],"raw_orcid":"https://orcid.org/0009-0000-5718-0426","affiliations":[{"raw_affiliation_string":"University of Plymouth, School of Biological and Marine Sciences","institution_ids":["https://openalex.org/I897542642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5150026813","display_name":"Green Lotty","orcid":"https://orcid.org/0009-0009-0538-4115","observed_orcids":["https://orcid.org/0009-0009-0538-4115"]},"institutions":[{"id":"https://openalex.org/I897542642","display_name":"University of Plymouth","ror":"https://ror.org/008n7pv89","country_code":"GB","type":"education","lineage":["https://openalex.org/I897542642"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lotty, Green","raw_affiliation_strings":["University of Plymouth, School of Biological and Marine Sciences"],"raw_orcid":"https://orcid.org/0009-0009-0538-4115","affiliations":[{"raw_affiliation_string":"University of Plymouth, School of Biological and Marine Sciences","institution_ids":["https://openalex.org/I897542642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5140738047","display_name":"Anna Shenk-Evans","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I52218309","display_name":"Smithsonian Environmental Research Center","ror":"https://ror.org/032a13752","country_code":"US","type":"facility","lineage":["https://openalex.org/I103187081","https://openalex.org/I52218309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shenk-Evans, Anna","raw_affiliation_strings":["Smithsonian Environmental Research Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Smithsonian Environmental Research Center","institution_ids":["https://openalex.org/I52218309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5147974834","display_name":"Victoria E. Mann","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I897542642","display_name":"University of Plymouth","ror":"https://ror.org/008n7pv89","country_code":"GB","type":"education","lineage":["https://openalex.org/I897542642"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mann, Victoria E.","raw_affiliation_strings":["University of Plymouth, School of Biological and Marine Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Plymouth, School of Biological and Marine Sciences","institution_ids":["https://openalex.org/I897542642"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035730255","display_name":"Leah M. Harper","orcid":"https://orcid.org/0000-0002-0159-6059","observed_orcids":["https://orcid.org/0000-0002-0159-6059"]},"institutions":[{"id":"https://openalex.org/I52218309","display_name":"Smithsonian Environmental Research Center","ror":"https://ror.org/032a13752","country_code":"US","type":"facility","lineage":["https://openalex.org/I103187081","https://openalex.org/I52218309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harper, Leah M.","raw_affiliation_strings":["Smithsonian Environmental Research Center"],"raw_orcid":"https://orcid.org/0000-0002-0159-6059","affiliations":[{"raw_affiliation_string":"Smithsonian Environmental Research Center","institution_ids":["https://openalex.org/I52218309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039849985","display_name":"Nicola L. Foster","orcid":"https://orcid.org/0000-0001-9796-1753","observed_orcids":["https://orcid.org/0000-0001-9796-1753"]},"institutions":[{"id":"https://openalex.org/I897542642","display_name":"University of Plymouth","ror":"https://ror.org/008n7pv89","country_code":"GB","type":"education","lineage":["https://openalex.org/I897542642"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Foster, Nicola L.","raw_affiliation_strings":["University of Plymouth, School of Biological and Marine Sciences"],"raw_orcid":"https://orcid.org/0000-0001-9796-1753","affiliations":[{"raw_affiliation_string":"University of Plymouth, School of Biological and Marine Sciences","institution_ids":["https://openalex.org/I897542642"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10341","display_name":"Coral and Marine Ecosystems Studies","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10341","display_name":"Coral and Marine Ecosystems Studies","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.019300000742077827,"subfield":{"id":"https://openalex.org/subfields/2613","display_name":"Statistics and Probability"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10765","display_name":"Marine Biology and Ecology Research","score":0.004000000189989805,"subfield":{"id":"https://openalex.org/subfields/1910","display_name":"Oceanography"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coral-identification","display_name":"coral identification","score":0.996999979019165},{"id":"https://openalex.org/keywords/coral-reef-monitoring","display_name":"coral reef monitoring","score":0.4480000138282776},{"id":"https://openalex.org/keywords/flashcards","display_name":"flashcards","score":0.8130000233650208},{"id":"https://openalex.org/keywords/shiny-app","display_name":"Shiny app","score":0.6370000243186951},{"id":"https://openalex.org/keywords/caribbean-corals","display_name":"Caribbean corals","score":0.6830000281333923},{"id":"https://openalex.org/keywords/coral-taxonomy","display_name":"coral taxonomy","score":0.30799999833106995},{"id":"https://openalex.org/keywords/coral-reef-benthos","display_name":"coral reef benthos","score":0.44200000166893005}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5597000122070312},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5235999822616577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5084999799728394},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.445499986410141},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.39480000734329224},{"id":"https://openalex.org/C65377053","wikidata":"https://www.wikidata.org/wiki/Q1572121","display_name":"Image file formats","level":3,"score":0.39070001244544983},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.38589999079704285},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.3659999966621399},{"id":"https://openalex.org/C83849155","wikidata":"https://www.wikidata.org/wiki/Q1472399","display_name":"Internet access","level":3,"score":0.3596999943256378},{"id":"https://openalex.org/C118643609","wikidata":"https://www.wikidata.org/wiki/Q189210","display_name":"Web application","level":2,"score":0.3569999933242798},{"id":"https://openalex.org/C146778888","wikidata":"https://www.wikidata.org/wiki/Q836862","display_name":"Installation","level":2,"score":0.3427000045776367},{"id":"https://openalex.org/C143020374","wikidata":"https://www.wikidata.org/wiki/Q2411228","display_name":"Coral","level":2,"score":0.3334999978542328},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.3174000084400177},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.2935999929904938},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.275299996137619},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.2736999988555908},{"id":"https://openalex.org/C107394435","wikidata":"https://www.wikidata.org/wiki/Q1300585","display_name":"Quadrat","level":3,"score":0.273499995470047},{"id":"https://openalex.org/C119657128","wikidata":"https://www.wikidata.org/wiki/Q11633","display_name":"Photography","level":2,"score":0.25450000166893005},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.25380000472068787}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.17780287","doi":"https://doi.org/10.5281/zenodo.17780287","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17780287","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},{"id":"doi:10.5281/zenodo.17780288","doi":"https://doi.org/10.5281/zenodo.17780288","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17780288","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17780287","doi":"https://doi.org/10.5281/zenodo.17780287","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17780287","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2269001770","https://openalex.org/W4399569004","https://openalex.org/W2606818875","https://openalex.org/W3119561353","https://openalex.org/W7219105931","https://openalex.org/W3211172410","https://openalex.org/W2887789713","https://openalex.org/W2901989616","https://openalex.org/W6958392656","https://openalex.org/W7131664096"],"abstract_inverted_index":{"coralquiz":[0,60,251,336],"is":[1,23,179,245],"an":[2,304],"R":[3,61,172,248,284],"package":[4,62,131,173],"that":[5,170,308],"launches":[6],"a":[7,33,65,86,105,111,166,194,323],"Shiny":[8,342],"application":[9,244],"for":[10,58,69,126,138,366],"practising":[11],"and":[12,28,39,63,73,89,96,110,151,154,224,226,237,252,339],"testing":[13],"coral":[14,41,160],"identification":[15],"using":[16,44],"flashcard":[17],"style":[18],"image":[19,46,88,136,267,370],"prompts.":[20],"The":[21,75,130],"app":[22,76,343],"aimed":[24],"at":[25,231,376],"students,":[26],"researchers,":[27],"monitoring":[29],"programmes":[30],"who":[31],"need":[32],"simple,":[34],"reproducible":[35],"way":[36],"to":[37,121,123,134,181,279,310,363],"build":[38],"assess":[40],"ID":[42],"skills":[43],"curated":[45],"sets":[47,137,362],"or":[48,128,257,288,354],"their":[49,190],"own":[50,191,360],"photographs.":[51],"This":[52,318],"release":[53,319],"archives":[54],"the":[55,59,171,211,215,241,243,255,264,298,311,314,341],"source":[56,228],"code":[57],"provides":[64],"stable,":[66],"citable":[67],"version":[68],"use":[70,182,262],"in":[71,165,214,247,282,289,333,344,368],"teaching":[72],"research.":[74],"supports":[77],"two":[78],"main":[79],"modes:":[80],"Practice":[81],"mode":[82,100],"Ungraded":[83],"training":[84],"with":[85,104,263,295,303],"large":[87],"four":[90,233],"answer":[91],"options,":[92],"providing":[93],"instant":[94],"feedback":[95],"unlimited":[97],"questions.":[98],"Quiz":[99,115],"A":[101],"graded":[102],"quiz":[103],"fixed":[106],"number":[107],"of":[108],"questions":[109],"final":[112],"score":[113],"summary.":[114],"runs":[116],"can":[117,187,270],"optionally":[118],"be":[119,364],"written":[120],"CSV":[122],"track":[124],"performance":[125],"individuals":[127],"classes.":[129],"includes":[132],"access":[133],"online":[135,266],"Caribbean":[139],"reefs,":[140],"such":[141],"as":[142],"caribbean_benthos":[143],"(benthic":[144],"photo":[145,361],"quadrats":[146],"including":[147],"corals,":[148],"macroalgae,":[149],"sponges":[150],"other":[152],"substrata)":[153],"caribbean_corals":[155],"(closer":[156],"views":[157],"focused":[158],"on":[159,198],"taxa).":[161],"Images":[162],"are":[163,220,301],"hosted":[164],"separate":[167],"repository":[168],"so":[169],"remains":[174],"lightweight.":[175],"An":[176],"internet":[177],"connection":[178],"required":[180],"these":[183],"bundled":[184,265],"sources.":[185],"Users":[186],"also":[188,321],"supply":[189],"photographs":[192],"via":[193],"simple":[195],"folder":[196,208,316],"structure":[197],"disk":[199],"(photos_root":[200],"/":[201,203,205],"location":[202],"species":[204,352],"image_files).":[206],"Species":[207],"names":[209],"become":[210],"labels":[212],"shown":[213],"app.":[216],"Supported":[217],"file":[218],"types":[219],"jpg,":[221],"jpeg,":[222],"png,":[223],"webp,":[225],"each":[227],"should":[229],"contain":[230],"least":[232],"species.":[234],"App":[235],"launch":[236],"usage":[238],"After":[239],"installing":[240],"package,":[242],"launched":[246],"by":[249],"loading":[250],"calling":[253],"either":[254],"practice()":[256],"quiz()":[258],"functions.":[259],"For":[260,348],"standard":[261],"sets,":[268],"users":[269],"run:":[271],"coralquiz::practice(\"caribbean_benthos\")":[272],"coralquiz::quiz(\"caribbean_benthos\",":[273],"n":[274],"=":[275],"20)":[276],"Please":[277],"remember":[278],"press":[280],"stop":[281],"your":[283,359],"console":[285],"after":[286],"finishing,":[287],"between":[290],"different":[291],"sources/modes.":[292],"To":[293],"work":[294],"local":[296],"images,":[297],"same":[299],"functions":[300],"called":[302],"additional":[305],"photos_root":[306],"argument":[307],"points":[309],"directory":[312],"containing":[313],"location/species/image":[315],"structure.":[317],"may":[320],"include":[322],"small":[324],"helper":[325],"script":[326],"(for":[327],"example":[328],"launch_coralquiz.R)":[329],"which,":[330],"when":[331],"sourced":[332],"R,":[334],"installs":[335],"if":[337,355],"needed":[338],"opens":[340],"practice":[345],"mode.":[346],"Contact":[347],"any":[349],"queries":[350],"regarding":[351],"identifications,":[353],"you":[356],"would":[357],"like":[358],"considered":[365],"inclusion":[367],"future":[369],"sources,":[371],"please":[372],"contact":[373],"Matthew":[374],"Doherty":[375],"dohertym@protonmail.com.":[377]},"counts_by_year":[],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2025-12-03T00:00:00"}