{"id":"https://openalex.org/W7081663407","doi":"https://doi.org/10.5281/zenodo.17117558","title":"LAMMPS: A Case Study For Applying Modern Software Engineering to an Established Research Software Package","display_name":"LAMMPS: A Case Study For Applying Modern Software Engineering to an Established Research Software Package","publication_year":2025,"publication_date":"2025-05-14","ids":{"openalex":"https://openalex.org/W7081663407","doi":"https://doi.org/10.5281/zenodo.17117558"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.17117558","doi":"https://doi.org/10.5281/zenodo.17117558","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17117558","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"ConferencePaper"},"volume":null,"type":"conference-paper","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.17117558","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026494099","display_name":"Axel Kohlmeyer","orcid":"https://orcid.org/0000-0001-6204-6475","observed_orcids":["https://orcid.org/0000-0001-6204-6475"]},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kohlmeyer, Axel","raw_affiliation_strings":["Temple University"],"raw_orcid":"https://orcid.org/0000-0001-6204-6475","affiliations":[{"raw_affiliation_string":"Temple University","institution_ids":["https://openalex.org/I84392919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000977599","display_name":"Richard A. Berger","orcid":"https://orcid.org/0000-0002-3044-8266","observed_orcids":["https://orcid.org/0000-0002-3044-8266"]},"institutions":[{"id":"https://openalex.org/I1343871089","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1343871089","https://openalex.org/I198811213","https://openalex.org/I4210120050"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Berger, Richard","raw_affiliation_strings":["Los Alamos National Laboratory"],"raw_orcid":"https://orcid.org/0000-0002-3044-8266","affiliations":[{"raw_affiliation_string":"Los Alamos National Laboratory","institution_ids":["https://openalex.org/I1343871089"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.44086451,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T10430","display_name":"Software Engineering Techniques and Practices","score":0.5863999724388123,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10430","display_name":"Software Engineering Techniques and Practices","score":0.5863999724388123,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.23469999432563782,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10260","display_name":"Software Engineering Research","score":0.14550000429153442,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/lammps","display_name":"LAMMPS","score":1.0},{"id":"https://openalex.org/keywords/molecular-dynamics-simulation-software","display_name":"molecular dynamics simulation software","score":0.7350000143051147},{"id":"https://openalex.org/keywords/research-software-engineering","display_name":"research software engineering","score":0.7409999966621399},{"id":"https://openalex.org/keywords/software-development-process","display_name":"software development process","score":0.7570000290870667},{"id":"https://openalex.org/keywords/software-maintenance","display_name":"software maintenance","score":0.6880000233650208},{"id":"https://openalex.org/keywords/open-source-software","display_name":"open source software","score":0.593999981880188},{"id":"https://openalex.org/keywords/code-quality","display_name":"code quality","score":0.9480000138282776},{"id":"https://openalex.org/keywords/software-extensibility","display_name":"software extensibility","score":0.6930000185966492},{"id":"https://openalex.org/keywords/user-base","display_name":"user base","score":0.34200000762939453},{"id":"https://openalex.org/keywords/software-popularity","display_name":"software popularity","score":0.34200000762939453}],"concepts":[{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.6877999901771545},{"id":"https://openalex.org/C123551368","wikidata":"https://www.wikidata.org/wiki/Q7122888","display_name":"Package development process","level":5,"score":0.666700005531311},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.6256999969482422},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.6190000176429749},{"id":"https://openalex.org/C39890963","wikidata":"https://www.wikidata.org/wiki/Q1702721","display_name":"Personal software process","level":5,"score":0.6074000000953674},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5911999940872192},{"id":"https://openalex.org/C182500959","wikidata":"https://www.wikidata.org/wiki/Q7551380","display_name":"Social software engineering","level":5,"score":0.5400000214576721},{"id":"https://openalex.org/C74579156","wikidata":"https://www.wikidata.org/wiki/Q7554342","display_name":"Software peer review","level":5,"score":0.42969998717308044},{"id":"https://openalex.org/C180152950","wikidata":"https://www.wikidata.org/wiki/Q2904257","display_name":"Software development process","level":4,"score":0.4036000072956085},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4011000096797943},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.3880999982357025},{"id":"https://openalex.org/C149091818","wikidata":"https://www.wikidata.org/wiki/Q2429814","display_name":"Software system","level":3,"score":0.38749998807907104},{"id":"https://openalex.org/C21491501","wikidata":"https://www.wikidata.org/wiki/Q430253","display_name":"Backporting","level":5,"score":0.36079999804496765},{"id":"https://openalex.org/C48002344","wikidata":"https://www.wikidata.org/wiki/Q2919644","display_name":"Verification and validation","level":2,"score":0.35850000381469727},{"id":"https://openalex.org/C171981572","wikidata":"https://www.wikidata.org/wiki/Q7554239","display_name":"Software analytics","level":5,"score":0.3555999994277954},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.3447999954223633},{"id":"https://openalex.org/C44416564","wikidata":"https://www.wikidata.org/wiki/Q7554199","display_name":"Software Engineering Process Group","level":5,"score":0.3377000093460083},{"id":"https://openalex.org/C117447612","wikidata":"https://www.wikidata.org/wiki/Q1412670","display_name":"Software quality","level":4,"score":0.33730000257492065},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.32350000739097595},{"id":"https://openalex.org/C46110900","wikidata":"https://www.wikidata.org/wiki/Q11702993","display_name":"Software walkthrough","level":5,"score":0.304500013589859},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.2915000021457672},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.2840999960899353},{"id":"https://openalex.org/C201515116","wikidata":"https://www.wikidata.org/wiki/Q7554363","display_name":"Software sizing","level":5,"score":0.2728999853134155},{"id":"https://openalex.org/C3020440742","wikidata":"https://www.wikidata.org/wiki/Q1176855","display_name":"Software package","level":3,"score":0.2711000144481659},{"id":"https://openalex.org/C198140048","wikidata":"https://www.wikidata.org/wiki/Q10859422","display_name":"Software versioning","level":3,"score":0.26409998536109924},{"id":"https://openalex.org/C89567784","wikidata":"https://www.wikidata.org/wiki/Q7554325","display_name":"Software measurement","level":5,"score":0.2567000091075897}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.5281/zenodo.17117558","doi":"https://doi.org/10.5281/zenodo.17117558","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17117558","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"ConferencePaper"},{"id":"doi:10.5281/zenodo.17117559","doi":"https://doi.org/10.5281/zenodo.17117559","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17117559","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"ConferencePaper"},{"id":"doi:10.5281/zenodo.17410115","doi":"https://doi.org/10.5281/zenodo.17410115","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17410115","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"ConferencePaper"}],"best_oa_location":{"id":"doi:10.5281/zenodo.17117558","doi":"https://doi.org/10.5281/zenodo.17117558","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.17117558","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"ConferencePaper"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1121466418","display_name":null,"funder_award_id":"2149742","funder_id":"https://openalex.org/F4320338291","funder_display_name":"Sandia National Laboratories"},{"id":"https://openalex.org/G1279347439","display_name":null,"funder_award_id":"89233218CNA 000001","funder_id":"https://openalex.org/F4320338304","funder_display_name":"Los Alamos National Laboratory"},{"id":"https://openalex.org/G8308585509","display_name":null,"funder_award_id":"2407526","funder_id":"https://openalex.org/F4320338291","funder_display_name":"Sandia National Laboratories"}],"funders":[{"id":"https://openalex.org/F4320338291","display_name":"Sandia National Laboratories","ror":"https://ror.org/01apwpt12"},{"id":"https://openalex.org/F4320338304","display_name":"Los Alamos National Laboratory","ror":"https://ror.org/01e41cf67"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"We":[0,23,66,116,130],"review":[1],"various":[2],"changes":[3,27,72],"made":[4],"in":[5,45,125,127],"recent":[6],"years":[7,51],"to":[8,35,105,121],"the":[9,14,20,30,58,75,84,88],"software":[10,17,21,40,85,102,113],"development":[11,103,114],"process":[12],"of":[13,57,80],"LAMMPS":[15],"simulation":[16],"package":[18,41],"and":[19,32,37,52,78,82],"itself.":[22],"discuss":[24],"how":[25,70,118],"those":[26,71],"have":[28,73],"impacted":[29],"effort":[31],"workflow":[33],"required":[34],"develop":[36],"maintain":[38],"a":[39,54,96,99,106],"that":[42,128],"has":[43,93],"been":[44],"existence":[46],"for":[47],"more":[48],"than":[49],"30":[50],"where":[53],"significant":[55,123],"part":[56],"code":[59,76],"base":[60],"is":[61],"contributed":[62],"by":[63],"external":[64],"developers.":[65],"also":[67],"look":[68],"into":[69],"affected":[74],"quality":[77],"ease":[79],"modifying":[81],"extending":[83],"while":[86],"at":[87],"same":[89],"time":[90],"its":[91],"audience":[92],"changed":[94],"from":[95],"cohort":[97],"with":[98,111,132],"generally":[100],"strong":[101],"background":[104],"group":[107],"containing":[108],"many":[109],"researchers":[110],"limited":[112],"skills.":[115],"explore":[117],"this":[119],"contributes":[120],"LAMMPS\u2019":[122],"growth":[124],"popularity":[126],"time.":[129],"close":[131],"an":[133],"outlook":[134],"on":[135],"future":[136],"steps.":[137]},"counts_by_year":[],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2025-10-10T00:00:00"}
