{"id":"https://openalex.org/W7075680744","doi":"https://doi.org/10.1101/gr.811003","title":"Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon inCandidaspp.","display_name":"Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon inCandidaspp.","publication_year":2003,"publication_date":"2003-04-01","ids":{"openalex":"https://openalex.org/W7075680744","doi":"https://doi.org/10.1101/gr.811003","pmid":"https://pubmed.ncbi.nlm.nih.gov/12670996","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/430169"},"language":"en","primary_location":{"id":"doi:10.1101/gr.811003","doi":"https://doi.org/10.1101/gr.811003","is_oa":false,"landing_page_url":"https://doi.org/10.1101/gr.811003","pdf_url":null,"source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/430169","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035571342","display_name":"Steven E. Massey","orcid":"https://orcid.org/0000-0001-8170-551X","observed_orcids":["https://orcid.org/0000-0001-8170-551X"]},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven E. Massey","raw_affiliation_strings":["Department of Biology, University of South Florida, Tampa, Florida 33620, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Florida, Tampa, Florida 33620, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Gabriela Moura","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["GB","PT","US"],"is_corresponding":false,"raw_author_name":"Gabriela Moura","raw_affiliation_strings":["Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK","institution_ids":["https://openalex.org/I20581793","https://openalex.org/I2613432","https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Pedro Beltr\u00e3o","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["GB","PT","US"],"is_corresponding":false,"raw_author_name":"Pedro Beltr\u00e3o","raw_affiliation_strings":["Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK","institution_ids":["https://openalex.org/I20581793","https://openalex.org/I2613432","https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Ricardo Almeida","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["GB","PT","US"],"is_corresponding":false,"raw_author_name":"Ricardo Almeida","raw_affiliation_strings":["Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK","institution_ids":["https://openalex.org/I20581793","https://openalex.org/I2613432","https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":null,"display_name":"James R. Garey","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["GB","PT","US"],"is_corresponding":false,"raw_author_name":"James R. Garey","raw_affiliation_strings":["Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK","institution_ids":["https://openalex.org/I20581793","https://openalex.org/I2613432","https://openalex.org/I60858718"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mick F. Tuite","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["GB","PT","US"],"is_corresponding":false,"raw_author_name":"Mick F. Tuite","raw_affiliation_strings":["Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK","institution_ids":["https://openalex.org/I20581793","https://openalex.org/I2613432","https://openalex.org/I60858718"]}]},{"author_position":"last","author":{"id":null,"display_name":"Manuel A.S. Santos","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20581793","display_name":"University of Kent","ror":"https://ror.org/00xkeyj56","country_code":"GB","type":"education","lineage":["https://openalex.org/I20581793"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]},{"id":"https://openalex.org/I60858718","display_name":"University of Aveiro","ror":"https://ror.org/00nt41z93","country_code":"PT","type":"education","lineage":["https://openalex.org/I60858718"]}],"countries":["GB","PT","US"],"is_corresponding":false,"raw_author_name":"Manuel A.S. Santos","raw_affiliation_strings":["Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of South Florida, Tampa, Florida 33620, USA; \n                           2Centre for Cell Biology, Department of Biology, University of Aveiro, 3810-193 Aveiro, Portugal;\n                           3Research School of Biosciences, University of Kent at Canterbury, Canterbury CT2 7NJ, UK","institution_ids":["https://openalex.org/I20581793","https://openalex.org/I2613432","https://openalex.org/I60858718"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":126,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":"4","first_page":"544","last_page":"557"},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/codon-reassignment","display_name":"codon reassignment","score":0.878000020980835},{"id":"https://openalex.org/keywords/trna-evolution","display_name":"tRNA evolution","score":0.6520000100135803},{"id":"https://openalex.org/keywords/genetic-code-evolution","display_name":"genetic code evolution","score":0.8169999718666077},{"id":"https://openalex.org/keywords/candida-albicans","display_name":"Candida albicans","score":0.9390000104904175},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.9589999914169312},{"id":"https://openalex.org/keywords/schizosaccharomyces-pombe","display_name":"Schizosaccharomyces pombe","score":0.9950000047683716},{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"codon usage bias","score":0.550000011920929},{"id":"https://openalex.org/keywords/yeast-genome","display_name":"yeast genome","score":0.48399999737739563}],"concepts":[{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.7953000068664551},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7764999866485596},{"id":"https://openalex.org/C87253356","wikidata":"https://www.wikidata.org/wiki/Q1106472","display_name":"Codon usage bias","level":4,"score":0.7084000110626221},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6044999957084656},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5468999743461609},{"id":"https://openalex.org/C10853874","wikidata":"https://www.wikidata.org/wiki/Q180618","display_name":"Genetic code","level":3,"score":0.5436999797821045},{"id":"https://openalex.org/C2779429346","wikidata":"https://www.wikidata.org/wiki/Q2236682","display_name":"Schizosaccharomyces pombe","level":4,"score":0.5357999801635742},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5130000114440918},{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.5001000165939331},{"id":"https://openalex.org/C20580545","wikidata":"https://www.wikidata.org/wiki/Q28354","display_name":"Stop codon","level":3,"score":0.4203999936580658},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.41830000281333923},{"id":"https://openalex.org/C166393388","wikidata":"https://www.wikidata.org/wiki/Q856529","display_name":"Molecular evolution","level":4,"score":0.3944999873638153},{"id":"https://openalex.org/C2776519988","wikidata":"https://www.wikidata.org/wiki/Q1317935","display_name":"Schizosaccharomyces","level":5,"score":0.3921000063419342},{"id":"https://openalex.org/C2776414213","wikidata":"https://www.wikidata.org/wiki/Q183290","display_name":"Serine","level":3,"score":0.35899999737739563},{"id":"https://openalex.org/C2780917455","wikidata":"https://www.wikidata.org/wiki/Q310443","display_name":"Candida albicans","level":2,"score":0.35589998960494995},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3418000042438507},{"id":"https://openalex.org/C176990463","wikidata":"https://www.wikidata.org/wiki/Q1854186","display_name":"Start codon","level":4,"score":0.303600013256073},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2906000018119812},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.28619998693466187},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.2660999894142151},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.26179999113082886},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.26030001044273376},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.25450000166893005}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002175","descriptor_name":"Candida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002176","descriptor_name":"Candida albicans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003062","descriptor_name":"Codon","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005800","descriptor_name":"Genes, Fungal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D007930","descriptor_name":"Leucine","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012346","descriptor_name":"RNA, Transfer, Amino Acyl","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013045","descriptor_name":"Species Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016366","descriptor_name":"Open Reading Frames","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020862","descriptor_name":"GC Rich Sequence","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D041221","descriptor_name":"Candida glabrata","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1101/gr.811003","doi":"https://doi.org/10.1101/gr.811003","is_oa":false,"landing_page_url":"https://doi.org/10.1101/gr.811003","pdf_url":null,"source":{"id":"https://openalex.org/S43092948","display_name":"Genome Research","issn_l":"1088-9051","issn":["1088-9051","1549-5469"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","doyens","jufo-3","ki-jl-2","medline","norway-2","poland-200","russia-white-list-1"],"host_organization":"https://openalex.org/P4310315909","host_organization_name":"Cold Spring Harbor Laboratory Press","host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Research","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:430169","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/430169","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Res","raw_type":"Text"},{"id":"pmid:12670996","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12670996","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome research","raw_type":"Comparative Study"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.715.4886","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.715.4886","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ua.pt/ii/rnomics/ReadObject.aspx?obj%3D4395","raw_type":"text"},{"id":"pmh:oai:kar.kent.ac.uk:11310","doi":null,"is_oa":false,"landing_page_url":"https://kar.kent.ac.uk/11310/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196264","display_name":"Kent Academic Repository (University of Kent)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I20581793","host_organization_name":"University of Kent","host_organization_lineage":["https://openalex.org/I20581793"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:ria.ua.pt:10773/27694","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/10773/27694","pdf_url":null,"source":{"id":"https://openalex.org/S4306402433","display_name":"Portuguese National Funding Agency for Science, Research and Technology (RCAAP Project by FCT)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:430169","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/430169","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genome Res","raw_type":"Text"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W328651688","https://openalex.org/W1487781539","https://openalex.org/W1502060396","https://openalex.org/W1512267178","https://openalex.org/W1541909027","https://openalex.org/W1664318060","https://openalex.org/W1676201694","https://openalex.org/W1871766838","https://openalex.org/W1919707350","https://openalex.org/W1967131476","https://openalex.org/W1968106162","https://openalex.org/W1971559304","https://openalex.org/W1976391553","https://openalex.org/W1986171929","https://openalex.org/W1993419746","https://openalex.org/W1996135412","https://openalex.org/W1999249940","https://openalex.org/W2002677631","https://openalex.org/W2004674004","https://openalex.org/W2004963253","https://openalex.org/W2009960889","https://openalex.org/W2012289106","https://openalex.org/W2013310162","https://openalex.org/W2021631942","https://openalex.org/W2021769293","https://openalex.org/W2025121505","https://openalex.org/W2026615833","https://openalex.org/W2029551024","https://openalex.org/W2034234434","https://openalex.org/W2039159054","https://openalex.org/W2041730140","https://openalex.org/W2042161296","https://openalex.org/W2047305198","https://openalex.org/W2048454561","https://openalex.org/W2049951186","https://openalex.org/W2052638172","https://openalex.org/W2056570096","https://openalex.org/W2059123697","https://openalex.org/W2061136251","https://openalex.org/W2063413799","https://openalex.org/W2065461553","https://openalex.org/W2084207316","https://openalex.org/W2084360037","https://openalex.org/W2086008885","https://openalex.org/W2091095027","https://openalex.org/W2129898029","https://openalex.org/W2144362290","https://openalex.org/W2149429041","https://openalex.org/W2156434383","https://openalex.org/W2157226738","https://openalex.org/W2158714788","https://openalex.org/W2163648372","https://openalex.org/W2167673850","https://openalex.org/W2409885542","https://openalex.org/W2422504117","https://openalex.org/W4211170746","https://openalex.org/W4234879553","https://openalex.org/W4236218512","https://openalex.org/W4388364508"],"related_works":["https://openalex.org/W7010284876","https://openalex.org/W2883863588","https://openalex.org/W2024464838","https://openalex.org/W2170087779","https://openalex.org/W251767105","https://openalex.org/W7098466909","https://openalex.org/W1664318060","https://openalex.org/W1986211431","https://openalex.org/W2005206815","https://openalex.org/W1978675712"],"abstract_inverted_index":{"Using":[0],"the":[1,7,18,30,56,59,71,74,78,95,101,114,130,133,140,145,151,154,160,168,183,193,255,258,262],"(near)":[2],"complete":[3],"genome":[4,98],"sequences":[5],"of":[6,20,29,58,73,80,90,132,153,170,182,192,223,257,261],"yeasts":[8],"Candida":[9,37,61,263],"albicans,":[10,82],"Saccharomyces":[11],"cerevisiae,":[12,84],"and":[13,69,85,108,118,175,206,214,226],"Schizosaccharomyces":[14],"pombe,":[15],"we":[16,46],"address":[17],"evolution":[19,72,169,181,256],"a":[21,106,110,220,251],"unique":[22],"genetic":[23],"code":[24],"change,":[25],"which":[26,64],"involves":[27],"decoding":[28,158],"standard":[31],"leucine-CTG":[32],"codon":[33,76,121,147,185],"as":[34],"serine":[35,107,205,224],"in":[36,77,113,187,197,210],"spp.":[38,62,264],"By":[39],"using":[40],"two":[41],"complementary":[42],"comparative":[43],"genomics":[44],"approaches,":[45],"have":[47,176],"been":[48,177],"able":[49],"to":[50],"shed":[51],"new":[52],"light":[53],"on":[54,70,254],"both":[55],"origin":[57,131],"novel":[60],"Ser-tRNA(CAG),":[63],"has":[65],"mediated":[66],"CTG":[67,75,146,157,171,194,231,248],"reassignment,":[68],"genomes":[79],"C.":[81,96,188,199],"S.":[83,86,212,215],"pombe.":[87],"Sequence":[88],"analyses":[89],"newly":[91],"identified":[92],"tRNAs":[93],"from":[94,105],"albicans":[97,200],"demonstrate":[99],"that":[100,119,139,143,219],"Ser-tRNA(CAG)":[102,134,161],"is":[103,135],"derived":[104],"not":[109,207],"leucine":[111,208],"tRNA":[112],"ancestor":[115],"yeast":[116],"species":[117],"this":[120],"reassignment":[122,249],"occurred":[123],"approximately":[124],"170":[125],"million":[126],"years":[127],"ago,":[128],"but":[129],"more":[136],"ancient,":[137],"implying":[138],"ancestral":[141],"Leu-tRNA":[142],"decoded":[144],"was":[148],"lost":[149],"after":[150],"appearance":[152],"Ser-tRNA(CAG).":[155],"Ambiguous":[156],"by":[159,204,235],"combined":[162],"with":[163],"biased":[164],"AT":[165],"pressure":[166],"forced":[167],"into":[172,230],"TTR":[173],"codons":[174,195,209,228,232],"major":[178,252],"forces":[179],"driving":[180],"CTN":[184],"family":[186],"albicans.":[189],"Remarkably,":[190],"most":[191],"present":[196],"extant":[198],"genes":[201],"are":[202],"encoded":[203],"homologous":[211],"cerevisiae":[213],"pombe":[216],"genes,":[217],"indicating":[218],"significant":[221],"number":[222],"TCN":[225],"AGY":[227],"evolved":[229],"either":[233,246],"directly":[234],"simultaneous":[236],"double":[237],"mutations":[238],"or":[239],"indirectly":[240],"through":[241],"an":[242],"intermediary":[243],"codon.":[244],"In":[245],"case,":[247],"had":[250],"impact":[253],"coding":[259],"component":[260],"genome.":[265]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":8},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":8},{"year":2012,"cited_by_count":5}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2025-10-27T00:00:00"}
