{"id":"https://openalex.org/W6986564529","doi":null,"title":"POSTER PRESENTATION: Identifying Candidate Genes for Tomato Anthracnose Resistance through QTL and PACE Analyses: Implications for Sustainable Food Systems","display_name":"POSTER PRESENTATION: Identifying Candidate Genes for Tomato Anthracnose Resistance through QTL and PACE Analyses: Implications for Sustainable Food Systems","publication_year":2024,"publication_date":"2024-09-16","ids":{"openalex":"https://openalex.org/W6986564529"},"language":"en","primary_location":{"id":"pmh:oai:scholarworks.uvm.edu:fss2024-1035","doi":null,"is_oa":false,"landing_page_url":"https://scholarworks.uvm.edu/context/fss2024/article/1035/viewcontent/title.pdf","pdf_url":"https://scholarworks.uvm.edu/context/fss2024/article/1035/viewcontent/title.pdf","source":{"id":"https://openalex.org/S4377196529","display_name":"ScholarWorks -A service of University of Vermont Libraries (University of Vermont)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I111236770","host_organization_name":"University of Vermont","host_organization_lineage":["https://openalex.org/I111236770"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Food Systems Summit 2024","raw_type":"text"},"volume":null,"type":"article","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Lupez-Ortiz, Carlos","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Lupez-Ortiz, Carlos","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.3919196,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.8682000041007996,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.8682000041007996,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.07339999824762344,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12771","display_name":"Plant pathogens and resistance mechanisms","score":0.048500001430511475,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/colletotrichum-coccodes","display_name":"Colletotrichum coccodes","score":0.972000002861023},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.8190000057220459},{"id":"https://openalex.org/keywords/candidate-genes","display_name":"candidate genes","score":0.8859999775886536},{"id":"https://openalex.org/keywords/quantitative-trait-loci","display_name":"quantitative trait loci","score":0.9179999828338623},{"id":"https://openalex.org/keywords/recombinant-inbred-lines","display_name":"recombinant inbred lines","score":0.8610000014305115},{"id":"https://openalex.org/keywords/ap2-erf-transcription-factors","display_name":"AP2/ERF transcription factors","score":0.9399999976158142},{"id":"https://openalex.org/keywords/n-acetyltransferase","display_name":"N-acetyltransferase","score":0.7099999785423279},{"id":"https://openalex.org/keywords/cytochrome-p450","display_name":"cytochrome P450","score":0.9860000014305115},{"id":"https://openalex.org/keywords/bhlh-transcription-factors","display_name":"bHLH transcription factors","score":0.9950000047683716},{"id":"https://openalex.org/keywords/disease-resistance-proteins","display_name":"disease resistance proteins","score":0.7480000257492065},{"id":"https://openalex.org/keywords/crispr-cas9-knockout","display_name":"CRISPR/Cas9 knockout","score":0.8999999761581421},{"id":"https://openalex.org/keywords/disease-resistance-breeding","display_name":"disease resistance breeding","score":0.5339999794960022},{"id":"https://openalex.org/keywords/sustainable-food-systems","display_name":"sustainable food systems","score":0.7089999914169312},{"id":"https://openalex.org/keywords/fungicide-reduction","display_name":"fungicide reduction","score":0.8600000143051147}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.863099992275238},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.7774999737739563},{"id":"https://openalex.org/C69991583","wikidata":"https://www.wikidata.org/wiki/Q1423575","display_name":"Candidate gene","level":3,"score":0.6492000222206116},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5842999815940857},{"id":"https://openalex.org/C197321923","wikidata":"https://www.wikidata.org/wiki/Q4886","display_name":"Cultivar","level":2,"score":0.5442000031471252},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.5047000050544739},{"id":"https://openalex.org/C93678976","wikidata":"https://www.wikidata.org/wiki/Q4215946","display_name":"Plant disease resistance","level":3,"score":0.4578999876976013},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43290001153945923},{"id":"https://openalex.org/C76725341","wikidata":"https://www.wikidata.org/wiki/Q1893126","display_name":"Inbred strain","level":3,"score":0.41429999470710754},{"id":"https://openalex.org/C137580998","wikidata":"https://www.wikidata.org/wiki/Q235352","display_name":"Crop","level":2,"score":0.3977000117301941},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36340001225471497},{"id":"https://openalex.org/C79877727","wikidata":"https://www.wikidata.org/wiki/Q24786020","display_name":"WRKY protein domain","level":5,"score":0.336899995803833},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.3100999891757965},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.29829999804496765},{"id":"https://openalex.org/C2779227213","wikidata":"https://www.wikidata.org/wiki/Q3954823","display_name":"Marker-assisted selection","level":4,"score":0.295199990272522},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.29179999232292175},{"id":"https://openalex.org/C169282265","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Molecular breeding","level":3,"score":0.2775000035762787},{"id":"https://openalex.org/C142870003","wikidata":"https://www.wikidata.org/wiki/Q843863","display_name":"Genetic linkage","level":3,"score":0.2662000060081482},{"id":"https://openalex.org/C155015343","wikidata":"https://www.wikidata.org/wiki/Q788558","display_name":"Plant breeding","level":2,"score":0.26510000228881836},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.2646999955177307},{"id":"https://openalex.org/C2777160741","wikidata":"https://www.wikidata.org/wiki/Q2311855","display_name":"Molecular marker","level":3,"score":0.2646999955177307}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:scholarworks.uvm.edu:fss2024-1035","doi":null,"is_oa":false,"landing_page_url":"https://scholarworks.uvm.edu/context/fss2024/article/1035/viewcontent/title.pdf","pdf_url":"https://scholarworks.uvm.edu/context/fss2024/article/1035/viewcontent/title.pdf","source":{"id":"https://openalex.org/S4377196529","display_name":"ScholarWorks -A service of University of Vermont Libraries (University of Vermont)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I111236770","host_organization_name":"University of Vermont","host_organization_lineage":["https://openalex.org/I111236770"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Food Systems Summit 2024","raw_type":"text"},{"id":"pmh:oai:scholarworks.uvm.edu:20.500.14849/2918","doi":null,"is_oa":false,"landing_page_url":"https://hdl.handle.net/20.500.14849/2918","pdf_url":null,"source":{"id":"https://openalex.org/S4377196529","display_name":"ScholarWorks -A service of University of Vermont Libraries (University of Vermont)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I111236770","host_organization_name":"University of Vermont","host_organization_lineage":["https://openalex.org/I111236770"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":1.0}],"sustainable_development_goals_aurora":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.559348464012146}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Anthracnose,":[0],"caused":[1],"by":[2,48,106],"the":[3,11,77,82,209,218],"fungal":[4],"pathogen":[5],"Colletotrichum":[6,113],"spp.,":[7],"is":[8,40],"one":[9],"of":[10,127,130,151,211],"most":[12],"significant":[13],"tomato":[14,110,239],"diseases":[15],"worldwide.":[16],"No":[17],"commercial":[18],"cultivars":[19,36],"with":[20,37,96,112,124],"anthracnose":[21,97,230],"resistance":[22,39,105,185,231],"are":[23],"available,":[24],"leading":[25],"to":[26,89,132],"substantial":[27],"crop":[28,54],"losses":[29],"and":[30,52,81,86,139,162,183,208,233,237],"increased":[31],"reliance":[32],"on":[33],"fungicides.":[34],"Developing":[35],"genetic":[38],"crucial":[41],"for":[42,104,115,202,229],"enhancing":[43],"sustainability":[44],"in":[45,222],"food":[46,243],"systems":[47],"reducing":[49],"chemical":[50],"inputs":[51],"preserving":[53],"yields.":[55],"To":[56],"address":[57],"this":[58,212,223],"challenge,":[59],"a":[60,74,125,135,143],"recombinant":[61],"inbred":[62],"line":[63],"(RIL)":[64],"mapping":[65,161],"population":[66,101],"(N":[67],"=":[68],"243)":[69],"has":[70,205],"been":[71,206],"made":[72],"from":[73],"cross":[75],"between":[76],"susceptible":[78],"US28":[79],"cultivar":[80],"resistant":[83],"but":[84],"semiwild":[85],"small-fruited":[87],"95L368":[88],"identify":[90],"quantitative":[91],"trait":[92],"loci":[93],"(QTLs)":[94],"associated":[95],"resistance.":[98],"The":[99],"RIL":[100],"was":[102,146],"phenotyped":[103],"inoculating":[107],"ripe":[108],"field-harvested":[109],"fruits":[111],"coccodes":[114],"two":[116],"seasons.":[117],"We":[118,169],"identified":[119,158],"twenty":[120],"QTLs":[121],"underlying":[122,166],"resistance,":[123],"range":[126],"phenotypic":[128],"variance":[129],"4.5":[131],"17.2%,":[133],"using":[134,148,159,188],"skeletal":[136],"linkage":[137],"map":[138],"GWAS.":[140],"In":[141],"addition,":[142],"QTLseq":[144],"analysis":[145],"performed":[147],"deep":[149],"sequencing":[150],"extreme":[152],"bulks":[153],"that":[154],"validated":[155,171],"QTL":[156],"positions":[157],"traditional":[160],"resolved":[163],"candidate":[164],"genes":[165],"various":[167],"QTLs.":[168],"further":[170],"AP2-like":[172],"ethylene-responsive":[173],"transcription":[174,181],"factor":[175],"(AP2/ERF),":[176],"N-alpha-acetyltransferase,":[177],"cytochrome":[178],"P450,":[179],"bHLH":[180],"factor,":[182],"disease":[184],"protein":[186],"RGA2-like":[187],"PCR":[189],"allelic":[190],"competitive":[191],"extension":[192],"(PACE)":[193],"genotyping.":[194],"Currently,":[195],"functional":[196],"research":[197],"utilizing":[198],"CRISPR/Cas9":[199],"gene":[200],"knockout":[201],"AP2/ERF":[203],"TF":[204],"conducted,":[207],"role":[210],"QTN":[213],"will":[214,225],"be":[215],"presented.":[216],"Additionally,":[217],"PACE":[219],"assays":[220],"developed":[221],"study":[224],"enable":[226],"high-throughput":[227],"screening":[228],"breeding":[232],"promote":[234],"more":[235],"resilient":[236],"sustainable":[238],"cultivation":[240],"practices":[241],"within":[242],"systems.":[244]},"counts_by_year":[],"updated_date":"2026-09-11T09:22:31.653822","created_date":"2025-10-10T00:00:00"}