{"id":"https://openalex.org/W6931704396","doi":"https://doi.org/10.5281/zenodo.7544547","title":"SARS-CoV-2 IgG seroprevalence surveys in blood donors before the vaccination campaign, France 2020-2021","display_name":"SARS-CoV-2 IgG seroprevalence surveys in blood donors before the vaccination campaign, France 2020-2021","publication_year":2023,"publication_date":"2023-01-17","ids":{"openalex":"https://openalex.org/W6931704396","doi":"https://doi.org/10.5281/zenodo.7544547"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.7544547","doi":"https://doi.org/10.5281/zenodo.7544547","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7544547","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"volume":null,"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.7544547","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005198529","display_name":"Pierre Gallian","orcid":"https://orcid.org/0000-0002-3310-5808","observed_orcids":["https://orcid.org/0000-0002-3310-5808"]},"institutions":[{"id":"https://openalex.org/I4210128919","display_name":"\u00c9tablissement Fran\u00e7ais du Sang","ror":"https://ror.org/037hby126","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210128919"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gallian, Pierre","raw_affiliation_strings":["\u00c9tablissement Fran\u00e7ais du Sang"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00c9tablissement Fran\u00e7ais du Sang","institution_ids":["https://openalex.org/I4210128919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005620957","display_name":"Nathana\u00ebl Hoz\u00e9","orcid":"https://orcid.org/0000-0002-3977-8966","observed_orcids":["https://orcid.org/0000-0002-3977-8966"]},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nathana\u00ebl Hoz\u00e9","raw_affiliation_strings":["Institut Pasteur"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Pasteur","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079110429","display_name":"Nad\u00e9ge Brisbarre","orcid":"https://orcid.org/0000-0002-2848-8218","observed_orcids":["https://orcid.org/0000-0002-2848-8218"]},"institutions":[{"id":"https://openalex.org/I4405274755","display_name":"Unit\u00e9 des Virus Emergents","ror":"https://ror.org/029fc9d45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I21491767","https://openalex.org/I4405274755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Brisbarre, Nad\u00e8ge","raw_affiliation_strings":["Unit\u00e9 des Virus \u00c9mergents"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 des Virus \u00c9mergents","institution_ids":["https://openalex.org/I4405274755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044810536","display_name":"Paola Mariela Saba Villarroel","orcid":"https://orcid.org/0000-0002-8695-5283","observed_orcids":["https://orcid.org/0000-0002-8695-5283"]},"institutions":[{"id":"https://openalex.org/I4405274755","display_name":"Unit\u00e9 des Virus Emergents","ror":"https://ror.org/029fc9d45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I21491767","https://openalex.org/I4405274755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Villarroel, Paola Mariela Saba","raw_affiliation_strings":["Unit\u00e9 des Virus \u00c9mergents"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 des Virus \u00c9mergents","institution_ids":["https://openalex.org/I4405274755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049165270","display_name":"Elif Nurtop","orcid":"https://orcid.org/0000-0002-9715-8394","observed_orcids":["https://orcid.org/0000-0002-9715-8394"]},"institutions":[{"id":"https://openalex.org/I4405274755","display_name":"Unit\u00e9 des Virus Emergents","ror":"https://ror.org/029fc9d45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I21491767","https://openalex.org/I4405274755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nurtop, Elif","raw_affiliation_strings":["Unit\u00e9 des Virus \u00c9mergents"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 des Virus \u00c9mergents","institution_ids":["https://openalex.org/I4405274755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065789014","display_name":"Christine Isnard","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405274755","display_name":"Unit\u00e9 des Virus Emergents","ror":"https://ror.org/029fc9d45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I21491767","https://openalex.org/I4405274755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Isnard, Christine","raw_affiliation_strings":["Unit\u00e9 des Virus \u00c9mergents"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 des Virus \u00c9mergents","institution_ids":["https://openalex.org/I4405274755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053644134","display_name":"Boris A. M. Pastorino","orcid":"https://orcid.org/0000-0001-5233-5193","observed_orcids":["https://orcid.org/0000-0001-5233-5193"]},"institutions":[{"id":"https://openalex.org/I4405274755","display_name":"Unit\u00e9 des Virus Emergents","ror":"https://ror.org/029fc9d45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I21491767","https://openalex.org/I4405274755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pastorino, Boris","raw_affiliation_strings":["Unit\u00e9 des Virus \u00c9mergents"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 des Virus \u00c9mergents","institution_ids":["https://openalex.org/I4405274755"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101935769","display_name":"Pascale Richard","orcid":"https://orcid.org/0000-0003-1864-3824","observed_orcids":["https://orcid.org/0000-0003-1864-3824"]},"institutions":[{"id":"https://openalex.org/I4210128919","display_name":"\u00c9tablissement Fran\u00e7ais du Sang","ror":"https://ror.org/037hby126","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210128919"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Richard, Pascale","raw_affiliation_strings":["\u00c9tablissement Fran\u00e7ais du Sang"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00c9tablissement Fran\u00e7ais du Sang","institution_ids":["https://openalex.org/I4210128919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083271501","display_name":"Pascal Morel","orcid":"https://orcid.org/0000-0002-8916-7717","observed_orcids":["https://orcid.org/0000-0002-8916-7717"]},"institutions":[{"id":"https://openalex.org/I4210128919","display_name":"\u00c9tablissement Fran\u00e7ais du Sang","ror":"https://ror.org/037hby126","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210128919"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Morel, Pascal","raw_affiliation_strings":["\u00c9tablissement Fran\u00e7ais du Sang"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00c9tablissement Fran\u00e7ais du Sang","institution_ids":["https://openalex.org/I4210128919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008514010","display_name":"Simon Cauchemez","orcid":"https://orcid.org/0000-0001-9186-4549","observed_orcids":["https://orcid.org/0000-0001-9186-4549"]},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cauchemez, Simon","raw_affiliation_strings":["Institut Pasteur"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut Pasteur","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067395185","display_name":"Xavier Nicolas de Lamballerie","orcid":"https://orcid.org/0000-0001-7895-2720","observed_orcids":["https://orcid.org/0000-0001-7895-2720"]},"institutions":[{"id":"https://openalex.org/I4405274755","display_name":"Unit\u00e9 des Virus Emergents","ror":"https://ror.org/029fc9d45","country_code":"FR","type":"facility","lineage":["https://openalex.org/I21491767","https://openalex.org/I4405274755"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"De Lamballerie, Xavier","raw_affiliation_strings":["Unit\u00e9 des Virus \u00c9mergents"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit\u00e9 des Virus \u00c9mergents","institution_ids":["https://openalex.org/I4405274755"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28058802,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":true,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.49950000643730164,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.49950000643730164,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.48170000314712524,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11754","display_name":"SARS-CoV-2 detection and testing","score":0.002300000051036477,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sars-cov-2","display_name":"SARS-CoV-2","score":0.996999979019165},{"id":"https://openalex.org/keywords/covid-19","display_name":"COVID-19 pandemic","score":0.9390000104904175},{"id":"https://openalex.org/keywords/seroprevalence","display_name":"seroprevalence","score":0.9200000166893005},{"id":"https://openalex.org/keywords/blood-donors","display_name":"blood donors","score":0.8880000114440918},{"id":"https://openalex.org/keywords/igg","display_name":"IgG","score":0.8529999852180481},{"id":"https://openalex.org/keywords/anti-n-antibodies","display_name":"anti-N antibodies","score":0.9430000185966492},{"id":"https://openalex.org/keywords/force-of-infection","display_name":"force of infection","score":0.9950000047683716},{"id":"https://openalex.org/keywords/antibody-waning","display_name":"antibody waning","score":0.9700000286102295},{"id":"https://openalex.org/keywords/serological-surveillance","display_name":"serological surveillance","score":0.6620000004768372}],"concepts":[{"id":"https://openalex.org/C2778494684","wikidata":"https://www.wikidata.org/wiki/Q3511357","display_name":"Seroprevalence","level":4,"score":0.6326000094413757},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.588100016117096},{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.4943000078201294},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.4702000021934509},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4684999883174896},{"id":"https://openalex.org/C171730128","wikidata":"https://www.wikidata.org/wiki/Q5227290","display_name":"Data file","level":2,"score":0.39309999346733093},{"id":"https://openalex.org/C3013748606","wikidata":"https://www.wikidata.org/wiki/Q15787","display_name":"Human immunodeficiency virus (HIV)","level":2,"score":0.39149999618530273},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3458999991416931},{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.31949999928474426},{"id":"https://openalex.org/C45189115","wikidata":"https://www.wikidata.org/wiki/Q502159","display_name":"Serology","level":3,"score":0.3124000132083893},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.2946999967098236},{"id":"https://openalex.org/C2776361769","wikidata":"https://www.wikidata.org/wiki/Q821775","display_name":"Public health surveillance","level":3,"score":0.2752000093460083},{"id":"https://openalex.org/C199163554","wikidata":"https://www.wikidata.org/wiki/Q1681619","display_name":"Univariate","level":3,"score":0.2667999863624573},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.25519999861717224}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.7544547","doi":"https://doi.org/10.5281/zenodo.7544547","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7544547","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.5281/zenodo.7544548","doi":"https://doi.org/10.5281/zenodo.7544548","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7544548","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.5281/zenodo.7544547","doi":"https://doi.org/10.5281/zenodo.7544547","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7544547","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.9763000011444092}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4391610877","https://openalex.org/W4387577680","https://openalex.org/W3037177566","https://openalex.org/W3042363376","https://openalex.org/W4213326544","https://openalex.org/W3197430550","https://openalex.org/W4390410719","https://openalex.org/W3046074458","https://openalex.org/W4399901165","https://openalex.org/W4294842710"],"abstract_inverted_index":{"Covidonneur":[0],"Codes":[1],"and":[2,27,40,43,50,59,108,146,162,191,254,285],"Data":[3,82,85,116],"for":[4,90,217],"the":[5,15,29,61,64,79,87,126,133,150,157,164,176,184,188,195,210,215,226,230,245,250,255,258,265,271,276,291,294,299,304,308],"paper":[6],"\u201cSARS-CoV-2":[7],"IgG":[8,106,111],"seroprevalence":[9,301],"surveys":[10],"in":[11,54,97,99,119,187,194],"blood":[12,95],"donors":[13,96],"before":[14],"vaccination":[16],"campaign,":[17],"France":[18,101],"2020-2021\u201d.":[19],"Overview":[20],"This":[21,288],"repository":[22],"contains":[23,86],"scripts":[24,34,181,189,289],"to":[25,35,69,104,182],"Read":[26],"format":[28,121],"serological":[30],"data.":[31],"Launch":[32,208,225],"MCMC":[33,65,227,277],"fit":[36],"models":[37,234],"of":[38,46,52,63,125,149,200,244,257,264,297,307],"infection":[39,53],"antibody":[41,309],"decay":[42,256,306],"estimate":[44],"parameters":[45],"infection-hospitalisation":[47],"ratio":[48],"(IHR)":[49],"force":[51],"each":[55,129,201],"region.":[56],"Infer":[57],"prevalence":[58],"plot":[60],"output":[62],"The":[66,74,83,198],"first":[67],"script":[68,80,239],"be":[70,173],"launched":[71],"is":[72,76,204],"Setup_data.R;":[73],"model":[75],"launch":[77],"with":[78],"launch_analysis.":[81],"folder":[84],"seroneutralisation":[88],"result":[89],"32605":[91],"samples":[92,107,112],"acquired":[93],"from":[94,175],"2020-2021":[98],"metropolitan":[100],"(Covdon_v3.csv)":[102],"corresponding":[103],"anti-S1":[105],"additional":[109],"anti-N":[110],"(Etude":[113],"antiN":[114],"T3T4T6.csv).":[115],"were":[117],"aggregated":[118],"a":[120,262,280],"that":[122],"maintains":[123],"anonymity":[124],"participants:":[127],"For":[128],"individual,":[130],"we":[131],"provide":[132],"age":[134,161,253],"group":[135],"(in":[136],"groups":[137],"18-30,":[138],"31-40,":[139],"41-50,":[140],"51-60,":[141],"61-70),":[142],"department,":[143],"survey":[144],"period":[145],"median":[147],"date":[148],"survey.":[151],"Additional":[152],"necessary":[153,211],"data":[154,216],"are":[155,235],"provided:":[156],"population":[158],"size":[159],"by":[160,252,275,303],"region,":[163],"public":[165],"daily":[166],"hospital":[167],"admissions.":[168],"Scripts":[169],"All":[170],"analyses":[171],"can":[172],"run":[174,183],"main.R":[177,207],"file,":[178],"which":[179],"calls":[180],"analysis":[185,219,243],"(contained":[186,193],"folder)":[190],"functions":[192,223],"R":[196,202],"folder).":[197],"purpose":[199],"file":[203],"described":[205],"below.":[206],"all":[209],"codes":[212],"Setup_data.R":[213],"Setup":[214],"further":[218],"functions.R":[220],"Some":[221],"usefuls":[222],"launch_MCMC.R":[224],"scripts.":[228],"In":[229],"directory":[231],"StanModels":[232],"three":[233],"provided.":[236],"posthoc_analysis.R":[237],"A":[238],"containing":[240],"some":[241],"posthoc":[242],"MCMC;":[246],"It":[247],"allows":[248],"plotting":[249],"IHR":[251,272],"assay":[259],"capacity":[260],"as":[261,273],"function":[263],"time":[266],"since":[267],"seroconversion.":[268],"IHR_Covidonneur.R":[269],"Plot":[270],"estimated":[274],"script.":[278],"Here,":[279],"chain":[281],"was":[282],"uploaded":[283],"(Model3b.rds":[284],"Model3f.rds).":[286],"Seroprevalence_age.R":[287],"plots":[290],"observed":[292],"seroprevalence,":[293],"reconstructed":[295],"number":[296],"infection,":[298],"inferred":[300],"given":[302],"exponential":[305],"response":[310],"following":[311],"infection.":[312]},"counts_by_year":[],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2025-10-10T00:00:00"}
