{"id":"https://openalex.org/W68942307","doi":null,"title":"Computational Genome Analysis Using The G-language System","display_name":"Computational Genome Analysis Using The G-language System","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W68942307","mag":"68942307"},"language":"en","primary_location":{"id":"mag:68942307","doi":null,"is_oa":false,"landing_page_url":"http://www.g-language.org/data/gaou/doc/GGG-1-2008proof.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069148446","display_name":"Kazuharu Arakawa","orcid":"https://orcid.org/0000-0002-2893-4919","observed_orcids":["https://orcid.org/0000-0002-2893-4919"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kazuharu Arakawa","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-2893-4919","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013235276","display_name":"Haruo Suzuki","orcid":"https://orcid.org/0000-0003-1447-6109","observed_orcids":["https://orcid.org/0000-0003-1447-6109"]},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Haruo Suzuki","raw_affiliation_strings":["Keio Univ"],"raw_orcid":"https://orcid.org/0000-0003-1447-6109","affiliations":[{"raw_affiliation_string":"Keio Univ","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015575713","display_name":"Masaru Tomita","orcid":"https://orcid.org/0000-0003-3423-377X","observed_orcids":["https://orcid.org/0000-0003-3423-377X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Masaru Tomita","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.672,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.62743779,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":97},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9312000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9312000274658203,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.03889999911189079,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.012600000016391277,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-genomics","display_name":"computational genomics","score":0.8029999732971191},{"id":"https://openalex.org/keywords/analysis-workflows","display_name":"analysis workflows","score":0.7799999713897705},{"id":"https://openalex.org/keywords/nucleotide-composition","display_name":"nucleotide composition","score":0.8790000081062317},{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"codon usage bias","score":0.9940000176429749},{"id":"https://openalex.org/keywords/gene-expression-prediction","display_name":"gene expression prediction","score":0.9860000014305115},{"id":"https://openalex.org/keywords/microsatellite-markers","display_name":"microsatellite markers","score":0.9829999804496765},{"id":"https://openalex.org/keywords/palindromes","display_name":"palindromes","score":0.9670000076293945},{"id":"https://openalex.org/keywords/open-source-software","display_name":"open source software","score":0.5830000042915344}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6965240240097046},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6796633005142212},{"id":"https://openalex.org/C39238701","wikidata":"https://www.wikidata.org/wiki/Q2091816","display_name":"Computational genomics","level":5,"score":0.5740622878074646},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5440501570701599},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.49325841665267944},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.47287696599960327},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.46241995692253113},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.44190043210983276},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3476178050041199},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34575605392456055},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33767667412757874},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13030877709388733},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.12542879581451416},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10796526074409485},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"mag:68942307","doi":null,"is_oa":false,"landing_page_url":"http://www.g-language.org/data/gaou/doc/GGG-1-2008proof.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":132,"referenced_works":["https://openalex.org/W1543459401","https://openalex.org/W1544273189","https://openalex.org/W1559735676","https://openalex.org/W1561410733","https://openalex.org/W1594280858","https://openalex.org/W1695430372","https://openalex.org/W1786753252","https://openalex.org/W1789174141","https://openalex.org/W1807210160","https://openalex.org/W1966514114","https://openalex.org/W1967656821","https://openalex.org/W1969044272","https://openalex.org/W1971901785","https://openalex.org/W1972204126","https://openalex.org/W1973195181","https://openalex.org/W1973365755","https://openalex.org/W1974217521","https://openalex.org/W1974557906","https://openalex.org/W1978486653","https://openalex.org/W1980602152","https://openalex.org/W1981053737","https://openalex.org/W1982680035","https://openalex.org/W1983096870","https://openalex.org/W1983993556","https://openalex.org/W1987853052","https://openalex.org/W1991480269","https://openalex.org/W1995875735","https://openalex.org/W1996423252","https://openalex.org/W1998269721","https://openalex.org/W1998735890","https://openalex.org/W2004146038","https://openalex.org/W2004685742","https://openalex.org/W2005652623","https://openalex.org/W2010671788","https://openalex.org/W2010955969","https://openalex.org/W2015669937","https://openalex.org/W2016060560","https://openalex.org/W2018590530","https://openalex.org/W2019094970","https://openalex.org/W2019604065","https://openalex.org/W2030205072","https://openalex.org/W2030564603","https://openalex.org/W2033029487","https://openalex.org/W2034628577","https://openalex.org/W2039593299","https://openalex.org/W2040745248","https://openalex.org/W2041877620","https://openalex.org/W2045348184","https://openalex.org/W2046856892","https://openalex.org/W2047858066","https://openalex.org/W2051043527","https://openalex.org/W2051385743","https://openalex.org/W2053401664","https://openalex.org/W2054251921","https://openalex.org/W2057000344","https://openalex.org/W2064632458","https://openalex.org/W2065120930","https://openalex.org/W2066266675","https://openalex.org/W2068571674","https://openalex.org/W2072284352","https://openalex.org/W2073913491","https://openalex.org/W2074741614","https://openalex.org/W2077831958","https://openalex.org/W2080058732","https://openalex.org/W2081730254","https://openalex.org/W2084710376","https://openalex.org/W2086084754","https://openalex.org/W2091607609","https://openalex.org/W2095768984","https://openalex.org/W2097894329","https://openalex.org/W2100310722","https://openalex.org/W2102204963","https://openalex.org/W2105559365","https://openalex.org/W2106876051","https://openalex.org/W2106882534","https://openalex.org/W2108385415","https://openalex.org/W2110400517","https://openalex.org/W2113824405","https://openalex.org/W2117776410","https://openalex.org/W2119490692","https://openalex.org/W2121207530","https://openalex.org/W2122343942","https://openalex.org/W2124527296","https://openalex.org/W2124983445","https://openalex.org/W2125449562","https://openalex.org/W2130743074","https://openalex.org/W2131254312","https://openalex.org/W2138721124","https://openalex.org/W2140211206","https://openalex.org/W2140786447","https://openalex.org/W2141524685","https://openalex.org/W2142967793","https://openalex.org/W2143221412","https://openalex.org/W2143412370","https://openalex.org/W2143784594","https://openalex.org/W2144870003","https://openalex.org/W2148004368","https://openalex.org/W2148300596","https://openalex.org/W2149568322","https://openalex.org/W2149633455","https://openalex.org/W2150934173","https://openalex.org/W2151831732","https://openalex.org/W2153550523","https://openalex.org/W2154278477","https://openalex.org/W2155734003","https://openalex.org/W2156536014","https://openalex.org/W2157358322","https://openalex.org/W2158708753","https://openalex.org/W2158714788","https://openalex.org/W2160317546","https://openalex.org/W2160546317","https://openalex.org/W2160697532","https://openalex.org/W2161850605","https://openalex.org/W2162732321","https://openalex.org/W2163191830","https://openalex.org/W2164439005","https://openalex.org/W2164618276","https://openalex.org/W2165206297","https://openalex.org/W2165428180","https://openalex.org/W2165810896","https://openalex.org/W2166064969","https://openalex.org/W2166856833","https://openalex.org/W2167126318","https://openalex.org/W2167475892","https://openalex.org/W2168103533","https://openalex.org/W2169303410","https://openalex.org/W2169929748","https://openalex.org/W2363900707","https://openalex.org/W2399147819","https://openalex.org/W2765633603","https://openalex.org/W4235119856","https://openalex.org/W4253597045"],"related_works":["https://openalex.org/W7100539422","https://openalex.org/W7097806285","https://openalex.org/W2110400517","https://openalex.org/W7096840431","https://openalex.org/W7099978012","https://openalex.org/W7098361180","https://openalex.org/W1984300444","https://openalex.org/W2181176238","https://openalex.org/W7098289761","https://openalex.org/W1947754249"],"abstract_inverted_index":{"Computational":[0],"genome":[1,87,118,183],"analysis":[2,55,77,84,156],"requires":[3],"sophisticated":[4],"workflows,":[5],"seamlessly":[6],"uniting":[7],"multiple":[8],"tools":[9],"and":[10,56,64,68,70,89,99,109,139,148,154,165,176],"algorithms.":[11],"In":[12],"order":[13],"to":[14,71,178],"maximize":[15],"the":[16,48,74,107,124],"productivity":[17],"of":[18,30,76,126,136,144,150,157,196],"genomics":[19],"research":[20,185],"with":[21,47,92,128,172],"bioinformatics,":[22,60],"a":[23,40,100,180],"computational":[24],"framework":[25],"that":[26],"allows":[27],"rapid":[28],"integration":[29],"available":[31],"resources":[32],"is":[33,39],"desirable.":[34],"G-language":[35],"Genome":[36],"Analysis":[37],"Environment":[38],"generic":[41],"open-source":[42],"workbench":[43],"for":[44,59,86,123,186],"this":[45,113],"purpose,":[46],"aim":[49],"to:":[50],"1)":[51],"construct":[52],"an":[53,95],"integrated":[54],"development":[57],"environment":[58],"2)":[61],"systematically":[62],"accumulate":[63],"implement":[65],"existing":[66],"algorithms":[67,110,177,200],"data,":[69],"3)":[72],"aid":[73],"construction":[75],"workflows.":[78],"This":[79],"system":[80,114],"provides":[81],"over":[82],"200":[83],"methods":[85,108,122,169],"informatics":[88,119,184],"systems":[90],"biology,":[91],"programmable":[93],"interfaces,":[94],"interactive":[96],"command-line":[97],"shell,":[98],"graphical":[101],"user":[102],"interface.":[103],"Here":[104],"we":[105,191],"review":[106],"implemented":[111],"in":[112,182,202],"especially":[115],"focusing":[116],"on":[117],"analysis,":[120],"including":[121],"identification":[125],"sequences":[127],"significant":[129],"information":[130,133],"content":[131],"using":[132],"theory,":[134],"observation":[135],"nucleotide":[137],"composition":[138],"genomic":[140,204],"compositional":[141],"asymmetry,":[142],"calculation":[143],"codon":[145],"bias":[146],"measures":[147],"prediction":[149],"gene":[151],"expression":[152],"levels,":[153],"statistical":[155],"short":[158,162],"oligomers":[159],"such":[160],"as":[161],"tandem":[163],"repeats":[164],"palindromes.":[166],"Since":[167],"these":[168,199],"are":[170],"combined":[171],"several":[173,203],"other":[174],"applications":[175],"produce":[179],"workflow":[181],"studying":[187],"specific":[188],"biological":[189],"questions,":[190],"also":[192],"present":[193],"brief":[194],"overviews":[195],"workflows":[197],"utilizing":[198],"used":[201],"studies.":[205]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2016-06-24T00:00:00"}