{"id":"https://openalex.org/W610016757","doi":null,"title":"DNA Logic Circuits with a DNA Polymerase and a Nicking Enzyme","display_name":"DNA Logic Circuits with a DNA Polymerase and a Nicking Enzyme","publication_year":2011,"publication_date":"2011-07-11","ids":{"openalex":"https://openalex.org/W610016757","mag":"610016757"},"language":"ja","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.217.7838","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.217.7838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://world-comp.org/p2011/PDP5090.pdf","raw_type":"text"},"volume":null,"type":"article","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112705637","display_name":"Hirose Ryo","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hirose Ryo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101644567","display_name":"Satoshi Kobayashi","orcid":"https://orcid.org/0000-0002-4137-9091","observed_orcids":["https://orcid.org/0000-0002-4137-9091"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Satoshi Kobayashi","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-4137-9091","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5090436899","display_name":"Ken Komiya","orcid":"https://orcid.org/0000-0001-7385-9738","observed_orcids":["https://orcid.org/0000-0001-7385-9738"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ken Komiya","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-7385-9738","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.03494624,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":93},"biblio":{"volume":"2011","issue":"3","first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/2614","display_name":"Theoretical Computer Science"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.009999999776482582,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13182","display_name":"Quantum-Dot Cellular Automata","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-logic-circuits","display_name":"DNA logic circuits","score":0.9300000071525574},{"id":"https://openalex.org/keywords/dna-logic-gates","display_name":"DNA logic gates","score":0.9449999928474426},{"id":"https://openalex.org/keywords/dna-polymerase","display_name":"DNA polymerase","score":0.9139999747276306},{"id":"https://openalex.org/keywords/nicking-enzyme","display_name":"nicking enzyme","score":0.9610000252723694},{"id":"https://openalex.org/keywords/strand-displacement","display_name":"strand displacement","score":0.8489999771118164},{"id":"https://openalex.org/keywords/toehold-mediated-strand-displacement","display_name":"toehold-mediated strand displacement","score":0.9419999718666077},{"id":"https://openalex.org/keywords/reaction-kinetics","display_name":"reaction kinetics","score":0.46299999952316284}],"concepts":[{"id":"https://openalex.org/C131017901","wikidata":"https://www.wikidata.org/wiki/Q170451","display_name":"Logic gate","level":2,"score":0.6888687610626221},{"id":"https://openalex.org/C58140894","wikidata":"https://www.wikidata.org/wiki/Q560398","display_name":"OR gate","level":4,"score":0.49659186601638794},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.48456135392189026},{"id":"https://openalex.org/C10418432","wikidata":"https://www.wikidata.org/wiki/Q560370","display_name":"AND gate","level":3,"score":0.4786069095134735},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47051969170570374},{"id":"https://openalex.org/C2756471","wikidata":"https://www.wikidata.org/wiki/Q206286","display_name":"DNA polymerase","level":3,"score":0.4619244933128357},{"id":"https://openalex.org/C134146338","wikidata":"https://www.wikidata.org/wiki/Q1815901","display_name":"Electronic circuit","level":2,"score":0.41802045702934265},{"id":"https://openalex.org/C82047324","wikidata":"https://www.wikidata.org/wiki/Q177126","display_name":"DNA computing","level":3,"score":0.4171420931816101},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2656554877758026},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2562568485736847},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22618988156318665},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17436978220939636},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.09857875108718872}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.217.7838","doi":null,"is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.217.7838","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://world-comp.org/p2011/PDP5090.pdf","raw_type":"text"},{"id":"pmh:oai:t2r2.star.titech.ac.jp:50262243","doi":null,"is_oa":false,"landing_page_url":"http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100681401","pdf_url":null,"source":{"id":"https://openalex.org/S4377196385","display_name":"Tokyo Tech Research Repository (Tokyo Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I114531698","host_organization_name":"Tokyo Institute of Technology","host_organization_lineage":["https://openalex.org/I114531698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"mag:610016757","doi":null,"is_oa":false,"landing_page_url":"http://worldcomp-proceedings.com/proc/p2011/PDP5090.pdf","pdf_url":null,"source":{"id":"https://openalex.org/S4306555765","display_name":"\u7814\u7a76\u5831\u544a\u6570\u7406\u30e2\u30c7\u30eb\u5316\u3068\u554f\u984c\u89e3\u6c7a\uff08MPS\uff09","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":"\u7814\u7a76\u5831\u544a\u6570\u7406\u30e2\u30c7\u30eb\u5316\u3068\u554f\u984c\u89e3\u6c7a\uff08MPS\uff09","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W154463842","https://openalex.org/W1567090568","https://openalex.org/W1617520624","https://openalex.org/W1831457109","https://openalex.org/W1842664382","https://openalex.org/W1964928696","https://openalex.org/W1977312644","https://openalex.org/W1980301976","https://openalex.org/W1993933078","https://openalex.org/W2000804241","https://openalex.org/W2003091620","https://openalex.org/W2027603534","https://openalex.org/W2050630660","https://openalex.org/W2084798466","https://openalex.org/W2102699655","https://openalex.org/W2108903561","https://openalex.org/W2126961173","https://openalex.org/W2142539585"],"related_works":["https://openalex.org/W2976321815","https://openalex.org/W2895019331","https://openalex.org/W2973649352","https://openalex.org/W3156318799","https://openalex.org/W1829978875","https://openalex.org/W2789809270","https://openalex.org/W2768734115","https://openalex.org/W1779343208","https://openalex.org/W1976086519","https://openalex.org/W1964928696"],"abstract_inverted_index":{"Abstract":[0],"\u2014":[1],"The":[2],"current":[3],"most":[4],"popular":[5],"and":[6,26,86,116,141],"established":[7],"approach":[8,37],"to":[9,50,100,107],"DNA":[10,17,32,110,129,139],"logic":[11,33,53,111,132],"circuits":[12],"is":[13,77,94,105],"the":[14,28,57,72,79,92,119,122],"implementation":[15,130],"by":[16],"strands":[18],"reaction":[19],"networks":[20],"where":[21],"toehold-mediated":[22],"strand":[23],"displacement":[24,36],"invokes":[25],"performs":[27],"evaluation":[29],"of":[30,43,59,71,84,95,121,131],"each":[31],"gate.":[34],"Strand":[35],"requires,":[38],"however,":[39],"a":[40,52,65,109,128],"large":[41,82,96],"amount":[42],"time,":[44],"for":[45],"instance,":[46],"approximately":[47],"30":[48],"minutes,":[49],"execute":[51],"operation":[54],"([18]).":[55],"Furthermore,":[56],"concentration":[58],"an":[60],"output":[61,123],"molecule":[62],"released":[63],"from":[64],"gate":[66,73,87,93,112],"can":[67,117],"not":[68],"exceed":[69],"that":[70,81],"molecule.":[74,124],"Therefore,":[75],"it":[76,104],"often":[78],"case":[80],"quantities":[83],"input":[85],"molecules":[88],"are":[89],"required":[90],"when":[91],"out-degree.":[97],"In":[98],"order":[99],"overcome":[101],"these":[102],"problems,":[103],"indispensable":[106],"devise":[108],"which":[113],"runs":[114],"quickly":[115],"amplify":[118],"quantity":[120],"We":[125],"will":[126],"propose":[127],"gates":[133],"with":[134],"such":[135],"good":[136],"properties":[137],"using":[138],"polymerase":[140],"nicking":[142],"enzyme.":[143]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2016-06-24T00:00:00"}
