{"id":"https://openalex.org/W55827295","doi":null,"title":"Phylogenetic analysis of the capripoxvirus RPO30 gene and its use in a PCR test for differentiating sheep poxvirus from goat poxvirus","display_name":"Phylogenetic analysis of the capripoxvirus RPO30 gene and its use in a PCR test for differentiating sheep poxvirus from goat poxvirus","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W55827295","mag":"55827295"},"language":"en","primary_location":{"id":"pmh:oai:agritrop.cirad.fr:559644","doi":null,"is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/559644/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sustainable improvement of animal production and health","raw_type":"info:eu-repo/semantics/conferenceObject"},"volume":null,"type":"conference-paper","indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031134512","display_name":"Charles Euloge Lamien","orcid":"https://orcid.org/0000-0003-1899-7614","observed_orcids":["https://orcid.org/0000-0003-1899-7614"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lamien, Charles Euloge","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084621279","display_name":"Mamadou Lelenta","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lelenta, Mamadou","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006678005","display_name":"Roland Silber","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210165597","display_name":"Austrian Agency for Health and Food Safety","ror":"https://ror.org/055xb4311","country_code":"AT","type":"other","lineage":["https://openalex.org/I4210090596","https://openalex.org/I4210124173","https://openalex.org/I4210165597"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Silber, Roland","raw_affiliation_strings":["Institute for Veterinary Disease Control, Austrian Agency for Health and Food Security, Moedling (Austria)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Veterinary Disease Control, Austrian Agency for Health and Food Security, Moedling (Austria)","institution_ids":["https://openalex.org/I4210165597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109233739","display_name":"Christian Le Goff","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1281029379","display_name":"International Atomic Energy Agency","ror":"https://ror.org/02zt1gg83","country_code":"AT","type":"nonprofit","lineage":["https://openalex.org/I1281029379"]},{"id":"https://openalex.org/I4210126154","display_name":"FAO/IAEA Agriculture and Biotechnology Laboratories","ror":"https://ror.org/02zty9d43","country_code":"AT","type":"facility","lineage":["https://openalex.org/I1281029379","https://openalex.org/I1286959531","https://openalex.org/I1320745970","https://openalex.org/I4210126154"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Le Goff, Christian","raw_affiliation_strings":["Animal Production and Health Laboratory, FAO/IAEA Agriculture and Biotechnology Laboratory, IAEA, Vienna (Austria)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Animal Production and Health Laboratory, FAO/IAEA Agriculture and Biotechnology Laboratory, IAEA, Vienna (Austria)","institution_ids":["https://openalex.org/I1281029379","https://openalex.org/I4210126154"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043548201","display_name":"David Brian Wallace","orcid":"https://orcid.org/0000-0002-3477-1597","observed_orcids":["https://orcid.org/0000-0002-3477-1597"]},"institutions":[{"id":"https://openalex.org/I4210146252","display_name":"Onderstepoort Veterinary Institute","ror":"https://ror.org/05dqm7k77","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I4210146252","https://openalex.org/I4210151505"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Wallace, David B.","raw_affiliation_strings":["Biotechnology Division, ARC-Onderstepoort Veterinary Institute, Onderstepoort (South Africa)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Division, ARC-Onderstepoort Veterinary Institute, Onderstepoort (South Africa)","institution_ids":["https://openalex.org/I4210146252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056220673","display_name":"Vel\u00fd Gulyaz","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210146513","display_name":"\u0130stanbul Pendik Veteriner Kontrol Enstit\u00fcs\u00fc","ror":"https://ror.org/046h96256","country_code":"TR","type":"government","lineage":["https://openalex.org/I4210146513","https://openalex.org/I4405262973"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Gulyaz, Vely","raw_affiliation_strings":["Pendik Veterinary Control and Research Institute, Pendik, Istanbul (Turkey)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pendik Veterinary Control and Research Institute, Pendik, Istanbul (Turkey)","institution_ids":["https://openalex.org/I4210146513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010936465","display_name":"Eeva S. M. Tuppurainen","orcid":"https://orcid.org/0000-0002-7998-0173","observed_orcids":["https://orcid.org/0000-0002-7998-0173"]},"institutions":[{"id":"https://openalex.org/I1287548271","display_name":"The Pirbright Institute","ror":"https://ror.org/04xv01a59","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1287548271","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tuppurainen, Eeva","raw_affiliation_strings":["Institute for Animal Health, Pirbright Laboratory, Woking, Surrey (United Kingdom)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Animal Health, Pirbright Laboratory, Woking, Surrey (United Kingdom)","institution_ids":["https://openalex.org/I1287548271"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111787565","display_name":"Antony George Luckins","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210146252","display_name":"Onderstepoort Veterinary Institute","ror":"https://ror.org/05dqm7k77","country_code":"ZA","type":"facility","lineage":["https://openalex.org/I4210146252","https://openalex.org/I4210151505"]}],"countries":["ZA"],"is_corresponding":false,"raw_author_name":"Luckins, Antony George","raw_affiliation_strings":["Biotechnology Division, ARC-Onderstepoort Veterinary Institute, Onderstepoort (South Africa)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biotechnology Division, ARC-Onderstepoort Veterinary Institute, Onderstepoort (South Africa)","institution_ids":["https://openalex.org/I4210146252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064758387","display_name":"Emmanuel Albina","orcid":"https://orcid.org/0000-0002-6613-3047","observed_orcids":["https://orcid.org/0000-0002-6613-3047"]},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Albina, Emmanuel","raw_affiliation_strings":["CIRAD, UMR Controle des Maladies, Montpellier (France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD, UMR Controle des Maladies, Montpellier (France)","institution_ids":["https://openalex.org/I131077856"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039119966","display_name":"Adama Diallo","orcid":"https://orcid.org/0000-0002-2797-7976","observed_orcids":["https://orcid.org/0000-0002-2797-7976","https://orcid.org/0000-0002-9421-0054"]},"institutions":[{"id":"https://openalex.org/I1281029379","display_name":"International Atomic Energy Agency","ror":"https://ror.org/02zt1gg83","country_code":"AT","type":"nonprofit","lineage":["https://openalex.org/I1281029379"]},{"id":"https://openalex.org/I4210126154","display_name":"FAO/IAEA Agriculture and Biotechnology Laboratories","ror":"https://ror.org/02zty9d43","country_code":"AT","type":"facility","lineage":["https://openalex.org/I1281029379","https://openalex.org/I1286959531","https://openalex.org/I1320745970","https://openalex.org/I4210126154"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Diallo, Adama","raw_affiliation_strings":["Animal Production and Health Laboratory, FAO/IAEA Agriculture and Biotechnology Laboratory, IAEA, Vienna (Austria)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Animal Production and Health Laboratory, FAO/IAEA Agriculture and Biotechnology Laboratory, IAEA, Vienna (Austria)","institution_ids":["https://openalex.org/I1281029379","https://openalex.org/I4210126154"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.04109589,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11767","display_name":"Poxvirus research and outbreaks","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11767","display_name":"Poxvirus research and outbreaks","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11560","display_name":"Animal Disease Management and Epidemiology","score":0.017400000244379044,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/capripoxvirus","display_name":"Capripoxvirus","score":0.9599999785423279},{"id":"https://openalex.org/keywords/sheep-pox-virus","display_name":"sheep pox virus","score":0.9890000224113464},{"id":"https://openalex.org/keywords/lumpy-skin-disease-virus","display_name":"lumpy skin disease virus","score":0.9990000128746033},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.9449999928474426},{"id":"https://openalex.org/keywords/differential-diagnosis","display_name":"differential diagnosis","score":0.625},{"id":"https://openalex.org/keywords/pcr-assay","display_name":"PCR testing","score":0.5569999814033508},{"id":"https://openalex.org/keywords/strain-genotyping","display_name":"strain genotyping","score":0.6190000176429749},{"id":"https://openalex.org/keywords/host-specificity","display_name":"host specificity","score":0.7269999980926514},{"id":"https://openalex.org/keywords/poxvirus","display_name":"poxvirus","score":0.8939999938011169}],"concepts":[{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.7035796642303467},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6771607398986816},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.4844972789287567},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.44539737701416016},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3727680742740631},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.2786408066749573},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25148195028305054}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:agritrop.cirad.fr:559644","doi":null,"is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/559644/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sustainable improvement of animal production and health","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2089283249","https://openalex.org/W2085177877","https://openalex.org/W2055519244","https://openalex.org/W3217657636","https://openalex.org/W3009371227","https://openalex.org/W2076427028","https://openalex.org/W1987781910","https://openalex.org/W2090117411","https://openalex.org/W7100293644","https://openalex.org/W3017259565"],"abstract_inverted_index":{"The":[0,48,128],"Genus":[1],"Capripoxvirus":[2],"(CaPV)":[3],"of":[4,50,112,125,190],"the":[5,55,66,73,110,122,134,148,150,153,167,186],"Poxviridae":[6],"family":[7],"comprises":[8],"sheep":[9],"poxvirus":[10,13],"(SPPV),":[11],"goat":[12],"(GTPV)":[14],"and":[15,31,95,105,152],"lumpy":[16],"skin":[17],"disease":[18],"virus":[19],"(LSDV)":[20],"which":[21,43,69],"are":[22,89],"responsible":[23],"for":[24,62,116],"economically":[25],"important":[26],"diseases":[27,191],"affecting":[28],"sheep,":[29],"goats":[30],"cattle":[32],"respectively.":[33],"To":[34],"date,":[35],"there":[36],"have":[37,120,131],"been":[38],"no":[39],"molecular":[40],"criteria":[41],"upon":[42],"to":[44,57,109,144,172,178],"base":[45],"strain":[46],"designation.":[47],"complexity":[49],"CaPVs":[51,63],"host":[52,74,146],"specificity":[53],"shows":[54],"need":[56],"develop":[58],"more":[59,113],"reliable":[60],"tools":[61],"identification":[64],"than":[65],"current":[67],"method":[68,177],"is":[70],"based":[71,78],"on":[72,79],"origin.":[75],"Previous":[76],"reports,":[77],"partial":[80],"or":[81,196],"full":[82],"genome":[83],"sequencing":[84],"indicated":[85],"that":[86,133],"CaP":[87],"viruses":[88,135],"genetically":[90],"distinct":[91],"from":[92,181],"each":[93],"other":[94],"can":[96,136],"be":[97,137],"grouped":[98],"as":[99],"three":[100,140],"different":[101,141],"species:":[102],"SPPV,":[103,149],"GTPV":[104,151,197],"LSDV.":[106],"In":[107,156],"contributing":[108],"creation":[111],"stringent":[114],"data":[115],"genotyping":[117],"CaPVs,":[118],"we":[119],"analysed":[121],"RPO30":[123],"gene":[124],"several":[126],"isolates.":[127],"phylogenetic":[129],"reconstructions":[130],"shown":[132],"segregated":[138],"into":[139],"lineages":[142],"according":[143],"their":[145],"origins:":[147],"LSDV":[154],"lineages.":[155],"addition,":[157],"a":[158,174],"21-nucleotides":[159],"deletion":[160],"found":[161],"in":[162],"all":[163],"individuals":[164],"within":[165],"only":[166],"SPPV":[168,180,195],"group":[169],"was":[170],"exploited":[171],"design":[173],"classical":[175],"PCR":[176],"differentiate":[179],"GTPV.":[182],"This":[183],"test":[184],"allows":[185],"rapid":[187],"differential":[188],"diagnosis":[189],"caused":[192],"by":[193],"either":[194],"strains.":[198]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-10-13T10:08:12.033832","created_date":"2016-06-24T00:00:00"}
