{"id":"https://openalex.org/W47044026","doi":"https://doi.org/10.1016/s0076-6879(07)24009-1","title":"Evolution of RNA Editing Sites in the Mitochondrial Small Subunit rRNA of the Myxomycota","display_name":"Evolution of RNA Editing Sites in the Mitochondrial Small Subunit rRNA of the Myxomycota","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W47044026","doi":"https://doi.org/10.1016/s0076-6879(07)24009-1","mag":"47044026","pmid":"https://pubmed.ncbi.nlm.nih.gov/17662842"},"language":"en","primary_location":{"id":"doi:10.1016/s0076-6879(07)24009-1","doi":"https://doi.org/10.1016/s0076-6879(07)24009-1","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0076-6879(07)24009-1","pdf_url":null,"source":{"id":"https://openalex.org/S182211142","display_name":"Methods in enzymology on CD-ROM/Methods in enzymology","issn_l":"0076-6879","issn":["0076-6879","1079-2376","1557-7988"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-3"],"host_organization":"https://openalex.org/P4310319955","host_organization_name":"Academic Press","host_organization_lineage":["https://openalex.org/P4310319955","https://openalex.org/P4310320990"],"host_organization_lineage_names":["Academic Press","Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Enzymology","raw_type":"book-chapter"},"volume":{"id":"https://openalex.org/W4248000736","display_name":"RNA Editing"},"type":"book-chapter","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113432847","display_name":"Uma Krishnan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Uma Krishnan","raw_affiliation_strings":["Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas, USA","Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas, USA","institution_ids":["https://openalex.org/I162577319"]},{"raw_affiliation_string":"Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003422807","display_name":"Arpi Barsamian","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arpi Barsamian","raw_affiliation_strings":["Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas","institution_ids":["https://openalex.org/I162577319"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007587285","display_name":"Dennis L. Miller","orcid":"https://orcid.org/0000-0002-7572-3356","observed_orcids":["https://orcid.org/0000-0002-7572-3356"]},"institutions":[{"id":"https://openalex.org/I162577319","display_name":"The University of Texas at Dallas","ror":"https://ror.org/049emcs32","country_code":"US","type":"education","lineage":["https://openalex.org/I162577319"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis L. Miller","raw_affiliation_strings":["Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular and Cell Biology, The University of Texas at Dallas, Richardson, Texas","institution_ids":["https://openalex.org/I162577319"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I162577319"],"apc_list":null,"apc_paid":null,"fwci":2.5894,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.89101983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":87,"max":97},"biblio":{"volume":"424","issue":null,"first_page":"197","last_page":"220"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.7583000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.7583000063896179,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.14480000734329224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11879","display_name":"Protist diversity and phylogeny","score":0.0471000000834465,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-editing","display_name":"RNA editing","score":0.9369999766349792},{"id":"https://openalex.org/keywords/myxomycota","display_name":"Myxomycota","score":0.9679999947547913},{"id":"https://openalex.org/keywords/physarum-polycephalum","display_name":"Physarum polycephalum","score":0.9980000257492065},{"id":"https://openalex.org/keywords/mitochondrial-dna","display_name":"mitochondrial DNA","score":0.7710000276565552},{"id":"https://openalex.org/keywords/phylogenetic-analysis","display_name":"phylogenetic analysis","score":0.6269999742507935},{"id":"https://openalex.org/keywords/covariation-analysis","display_name":"covariation analysis","score":0.7450000047683716},{"id":"https://openalex.org/keywords/rrna-secondary-structure","display_name":"rRNA secondary structure","score":0.621999979019165}],"concepts":[{"id":"https://openalex.org/C21786251","wikidata":"https://www.wikidata.org/wiki/Q14886350","display_name":"RNA editing","level":4,"score":0.9045950770378113},{"id":"https://openalex.org/C2780855919","wikidata":"https://www.wikidata.org/wiki/Q134950","display_name":"Physarum polycephalum","level":2,"score":0.8559648990631104},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.752921462059021},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.640705406665802},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6389591693878174},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5716404914855957},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.49511638283729553},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.46781373023986816},{"id":"https://openalex.org/C2778153493","wikidata":"https://www.wikidata.org/wiki/Q289636","display_name":"Physarum","level":3,"score":0.45791569352149963},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3925999402999878},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33732420206069946},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3344533443450928},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.102620929479599}],"mesh":[{"descriptor_ui":"D000077278","descriptor_name":"RNA, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001671","descriptor_name":"Biochemistry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D003001","descriptor_name":"Cloning, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005821","descriptor_name":"Genetic Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009235","descriptor_name":"Myxomycetes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012689","descriptor_name":"Sequence Homology, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017931","descriptor_name":"DNA Primers","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/s0076-6879(07)24009-1","doi":"https://doi.org/10.1016/s0076-6879(07)24009-1","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0076-6879(07)24009-1","pdf_url":null,"source":{"id":"https://openalex.org/S182211142","display_name":"Methods in enzymology on CD-ROM/Methods in enzymology","issn_l":"0076-6879","issn":["0076-6879","1079-2376","1557-7988"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-3"],"host_organization":"https://openalex.org/P4310319955","host_organization_name":"Academic Press","host_organization_lineage":["https://openalex.org/P4310319955","https://openalex.org/P4310320990"],"host_organization_lineage_names":["Academic Press","Elsevier BV"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in Enzymology","raw_type":"book-chapter"},{"id":"pmid:17662842","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17662842","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Methods in enzymology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W223675563","https://openalex.org/W244252285","https://openalex.org/W625710142","https://openalex.org/W820957531","https://openalex.org/W1001396404","https://openalex.org/W1496571197","https://openalex.org/W1657483521","https://openalex.org/W1969118849","https://openalex.org/W1973423766","https://openalex.org/W1981592019","https://openalex.org/W2009458681","https://openalex.org/W2010555259","https://openalex.org/W2032118018","https://openalex.org/W2032433136","https://openalex.org/W2040438092","https://openalex.org/W2044502249","https://openalex.org/W2050322700","https://openalex.org/W2054590158","https://openalex.org/W2059206728","https://openalex.org/W2060232244","https://openalex.org/W2063370687","https://openalex.org/W2074346310","https://openalex.org/W2076735576","https://openalex.org/W2098749993","https://openalex.org/W2122503964","https://openalex.org/W2135007228","https://openalex.org/W2135386854","https://openalex.org/W2138270253","https://openalex.org/W2148603391","https://openalex.org/W2154328095","https://openalex.org/W2156021317","https://openalex.org/W2321320208","https://openalex.org/W2570393699","https://openalex.org/W3087262305","https://openalex.org/W3113680728","https://openalex.org/W3199943451","https://openalex.org/W4388227583","https://openalex.org/W4388244308","https://openalex.org/W6626174773"],"related_works":["https://openalex.org/W223675563","https://openalex.org/W2148603391","https://openalex.org/W2002585346","https://openalex.org/W2044502249","https://openalex.org/W61141312","https://openalex.org/W2164590265","https://openalex.org/W2808157878","https://openalex.org/W2063370687","https://openalex.org/W2346125690","https://openalex.org/W2750161755"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2016-06-24T00:00:00"}