{"id":"https://openalex.org/W4416680971","doi":"https://doi.org/10.1158/0008-5472.30701044","title":"Table S2 from Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation at Transposable Element Loci","display_name":"Table S2 from Oncogenic Transformation Drives DNA Methylation Loss and Transcriptional Activation at Transposable Element Loci","publication_year":2025,"publication_date":"2025-11-24","ids":{"openalex":"https://openalex.org/W4416680971","doi":"https://doi.org/10.1158/0008-5472.30701044"},"language":null,"primary_location":{"id":"doi:10.1158/0008-5472.30701044","doi":"https://doi.org/10.1158/0008-5472.30701044","is_oa":true,"landing_page_url":"https://doi.org/10.1158/0008-5472.30701044","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"volume":null,"type":"other","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1158/0008-5472.30701044","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072097050","display_name":"Tomas Kanholm","orcid":"https://orcid.org/0000-0001-6894-8875","observed_orcids":["https://orcid.org/0000-0001-6894-8875"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tomas Kanholm","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6894-8875","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055264037","display_name":"Uzma Rentia","orcid":"https://orcid.org/0000-0002-1538-935X","observed_orcids":["https://orcid.org/0000-0002-1538-935X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Uzma Rentia","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1538-935X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035058057","display_name":"Melissa M. Hadley","orcid":"https://orcid.org/0009-0000-0410-9917","observed_orcids":["https://orcid.org/0009-0000-0410-9917"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Melissa Hadley","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0009-0000-0410-9917","affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Jennifer A. Karlow","orcid":"https://orcid.org/0000-0001-5041-2669","observed_orcids":["https://orcid.org/0000-0001-5041-2669"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jennifer A. Karlow","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-5041-2669","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075256407","display_name":"Olivia L. Cox","orcid":"https://orcid.org/0000-0002-0515-1073","observed_orcids":["https://orcid.org/0000-0002-0515-1073"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Olivia L. Cox","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-0515-1073","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002769854","display_name":"Noor Diab","orcid":"https://orcid.org/0000-0003-1665-8125","observed_orcids":["https://orcid.org/0000-0003-1665-8125"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Noor Diab","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1665-8125","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059793206","display_name":"Matthew L. Bendall","orcid":"https://orcid.org/0000-0001-9816-5425","observed_orcids":["https://orcid.org/0000-0001-9816-5425"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Matthew L. Bendall","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9816-5425","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062643703","display_name":"Tyson Dawson","orcid":"https://orcid.org/0000-0003-4888-9673","observed_orcids":["https://orcid.org/0000-0003-4888-9673"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Tyson Dawson","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-4888-9673","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037708298","display_name":"James I. McDonald","orcid":"https://orcid.org/0000-0002-5497-0083","observed_orcids":["https://orcid.org/0000-0002-5497-0083"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"James I. McDonald","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-5497-0083","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042651052","display_name":"Wenbing Xie","orcid":"https://orcid.org/0000-0003-2546-2415","observed_orcids":["https://orcid.org/0000-0003-2546-2415"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wenbing Xie","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-2546-2415","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046615539","display_name":"Keith A. Crandall","orcid":"https://orcid.org/0000-0002-0836-3389","observed_orcids":["https://orcid.org/0000-0002-0836-3389"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Keith A. Crandall","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-0836-3389","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075199037","display_name":"Kathleen H. Burns","orcid":"https://orcid.org/0000-0003-1620-3761","observed_orcids":["https://orcid.org/0000-0003-1620-3761"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kathleen H. Burns","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1620-3761","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058612163","display_name":"Stephen B. Baylin","orcid":"https://orcid.org/0000-0003-3697-3798","observed_orcids":["https://orcid.org/0000-0003-3697-3798"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stephen B. Baylin","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-3697-3798","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034057788","display_name":"Hariharan Easwaran","orcid":"https://orcid.org/0000-0002-5517-2972","observed_orcids":["https://orcid.org/0000-0002-5517-2972"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hari Easwaran","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-5517-2972","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5041123333","display_name":"Katherine Bakshian Chiappinelli","orcid":"https://orcid.org/0000-0001-9241-9105","observed_orcids":["https://orcid.org/0000-0001-9241-9105"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Katherine B. Chiappinelli","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9241-9105","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9872999787330627,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.006800000090152025,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oncogenic-transformation","display_name":"oncogenic transformation","score":0.9990000128746033},{"id":"https://openalex.org/keywords/dna-methylation-loss","display_name":"DNA methylation loss","score":0.9909999966621399},{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":0.8209999799728394},{"id":"https://openalex.org/keywords/transcriptional-activation","display_name":"transcriptional activation","score":0.9819999933242798},{"id":"https://openalex.org/keywords/epigenetic-reprogramming","display_name":"epigenetic reprogramming","score":0.7450000047683716}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.8497999906539917},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6773999929428101},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6550999879837036},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5971999764442444},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.5878000259399414},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.5724999904632568},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5493000149726868},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.47999998927116394},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41819998621940613},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.399399995803833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.36820000410079956},{"id":"https://openalex.org/C140173407","wikidata":"https://www.wikidata.org/wiki/Q1138358","display_name":"CpG site","level":5,"score":0.35429999232292175},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.3028999865055084},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.29100000858306885},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.29019999504089355},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.28690001368522644},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.2818000018596649},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.27630001306533813},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.27320000529289246},{"id":"https://openalex.org/C2780902518","wikidata":"https://www.wikidata.org/wiki/Q6033780","display_name":"Inheritance (genetic algorithm)","level":3,"score":0.26980000734329224},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.2529999911785126}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1158/0008-5472.30701044","doi":"https://doi.org/10.1158/0008-5472.30701044","is_oa":true,"landing_page_url":"https://doi.org/10.1158/0008-5472.30701044","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},{"id":"pmh:oai:figshare.com:article/30701044","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Table_S2_from_Oncogenic_Transformation_Drives_DNA_Methylation_Loss_and_Transcriptional_Activation_at_Transposable_Element_Loci/30701044","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.1158/0008-5472.30701044","doi":"https://doi.org/10.1158/0008-5472.30701044","is_oa":true,"landing_page_url":"https://doi.org/10.1158/0008-5472.30701044","pdf_url":null,"source":null,"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"American Association for Cancer Research","raw_type":"posted-content"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Table":[0],"S2":[1]},"counts_by_year":[],"updated_date":"2026-09-22T06:50:58.402377","created_date":"2025-11-25T00:00:00"}