{"id":"https://openalex.org/W4415564908","doi":"https://doi.org/10.3390/biology14111486","title":"Chromosome-Scale Genome Assembly and Genome-Wide Identification of Antimicrobial Peptide-Containing Genes in the Endangered Long-Finned Gudgeon Fish (Rhinogobio ventralis)","display_name":"Chromosome-Scale Genome Assembly and Genome-Wide Identification of Antimicrobial Peptide-Containing Genes in the Endangered Long-Finned Gudgeon Fish (Rhinogobio ventralis)","publication_year":2025,"publication_date":"2025-10-24","ids":{"openalex":"https://openalex.org/W4415564908","doi":"https://doi.org/10.3390/biology14111486","pmid":"https://pubmed.ncbi.nlm.nih.gov/41300277","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/12649986"},"language":"en","primary_location":{"id":"doi:10.3390/biology14111486","doi":"https://doi.org/10.3390/biology14111486","is_oa":true,"landing_page_url":"https://doi.org/10.3390/biology14111486","pdf_url":"https://www.mdpi.com/2079-7737/14/11/1486/pdf?version=1761301526","source":{"id":"https://openalex.org/S153489431","display_name":"Biology","issn_l":"2079-7737","issn":["2079-7737"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.mdpi.com/2079-7737/14/11/1486/pdf?version=1761301526","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013159155","display_name":"Jieming Chen","orcid":"https://orcid.org/0009-0001-4114-5295","observed_orcids":["https://orcid.org/0009-0001-4114-5295"]},"institutions":[{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jieming Chen","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China"],"raw_orcid":"https://orcid.org/0009-0001-4114-5295","affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100756075","display_name":"Xinhui Zhang","orcid":"https://orcid.org/0000-0002-4462-761X","observed_orcids":["https://orcid.org/0000-0002-4462-761X"]},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinhui Zhang","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518057, China","Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China"],"raw_orcid":"https://orcid.org/0000-0002-4462-761X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518057, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385642","display_name":"Yanping Li","orcid":"https://orcid.org/0000-0002-5771-0252","observed_orcids":["https://orcid.org/0000-0002-5771-0252","https://orcid.org/0000-0002-9857-9019"]},"institutions":[{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanping Li","raw_affiliation_strings":["College of Fisheries, Neijiang Normal University, Neijiang 641100, China","Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Fisheries, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004446560","display_name":"Yunyun Lv","orcid":"https://orcid.org/0009-0003-4941-268X","observed_orcids":["https://orcid.org/0009-0003-4941-268X"]},"institutions":[{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yunyun Lv","raw_affiliation_strings":["College of Life Sciences, Neijiang Normal University, Neijiang 641100, China","Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China"],"raw_orcid":"https://orcid.org/0009-0003-4941-268X","affiliations":[{"raw_affiliation_string":"College of Life Sciences, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004099788","display_name":"Xinxin You","orcid":"https://orcid.org/0000-0002-0136-7387","observed_orcids":["https://orcid.org/0000-0002-0136-7387"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xinxin You","raw_affiliation_strings":["Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025396939","display_name":"Qiong Shi","orcid":"https://orcid.org/0000-0002-6358-976X","observed_orcids":["https://orcid.org/0000-0002-6358-976X"]},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiong Shi","raw_affiliation_strings":["College of Fisheries, Neijiang Normal University, Neijiang 641100, China","College of Life Sciences, Neijiang Normal University, Neijiang 641100, China","Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518057, China","Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China"],"raw_orcid":"https://orcid.org/0000-0002-6358-976X","affiliations":[{"raw_affiliation_string":"College of Fisheries, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"College of Life Sciences, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518057, China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079227261","display_name":"Zhengyong Wen","orcid":"https://orcid.org/0000-0002-6198-5793","observed_orcids":["https://orcid.org/0000-0002-6198-5793"]},"institutions":[{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhengyong Wen","raw_affiliation_strings":["College of Fisheries, Neijiang Normal University, Neijiang 641100, China","Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China"],"raw_orcid":"https://orcid.org/0000-0002-6198-5793","affiliations":[{"raw_affiliation_string":"College of Fisheries, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, Neijiang Normal University, Neijiang 641100, China","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Shenzhen Key Lab of Marine Genomics, BGI Academy of Marine Sciences, Shenzhen 518081, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5025396939","https://openalex.org/A5079227261"],"corresponding_institution_ids":["https://openalex.org/I180726961","https://openalex.org/I4210117337"],"apc_list":{"value":2700,"currency":"CHF","value_usd":3258},"apc_paid":{"value":2700,"currency":"CHF","value_usd":3258},"fwci":0.2208,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.34208554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"14","issue":"11","first_page":"1486","last_page":"1486"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4887999892234802,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.2838999927043915,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11103","display_name":"Antimicrobial Peptides and Activities","score":0.09910000115633011,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromosome-level-genome-assembly","display_name":"chromosome-level genome assembly","score":0.8769999742507935},{"id":"https://openalex.org/keywords/antimicrobial-peptides","display_name":"antimicrobial peptides","score":0.9509999752044678},{"id":"https://openalex.org/keywords/genomic-prediction","display_name":"genomic prediction","score":0.40700000524520874},{"id":"https://openalex.org/keywords/repetitive-elements","display_name":"repetitive elements","score":0.6370000243186951},{"id":"https://openalex.org/keywords/protein-coding-genes","display_name":"protein-coding genes","score":0.7129999995231628},{"id":"https://openalex.org/keywords/endangered-fish-conservation","display_name":"endangered fish conservation","score":0.5400000214576721},{"id":"https://openalex.org/keywords/defensins","display_name":"defensins","score":0.5720000267028809},{"id":"https://openalex.org/keywords/heparin-binding-protein","display_name":"heparin-binding protein","score":0.7929999828338623},{"id":"https://openalex.org/keywords/claudin-1","display_name":"claudin-1","score":0.6499999761581421},{"id":"https://openalex.org/keywords/ubiquitin","display_name":"ubiquitin","score":0.4189999997615814}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9466999769210815},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7943999767303467},{"id":"https://openalex.org/C179345059","wikidata":"https://www.wikidata.org/wiki/Q11394","display_name":"Endangered species","level":3,"score":0.6664000153541565},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6010000109672546},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5648999810218811},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5393999814987183},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5088000297546387},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.40860000252723694},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.3864000141620636},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.3799000084400177},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36570000648498535},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.3495999872684479},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.3443000018596649},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3052999973297119},{"id":"https://openalex.org/C2778961482","wikidata":"https://www.wikidata.org/wiki/Q25241","display_name":"Vertebrate","level":3,"score":0.28029999136924744},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.2777999937534332},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.26570001244544983},{"id":"https://openalex.org/C155461473","wikidata":"https://www.wikidata.org/wiki/Q219127","display_name":"Critically endangered","level":4,"score":0.26350000500679016},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.26249998807907104},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.25209999084472656}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3390/biology14111486","doi":"https://doi.org/10.3390/biology14111486","is_oa":true,"landing_page_url":"https://doi.org/10.3390/biology14111486","pdf_url":"https://www.mdpi.com/2079-7737/14/11/1486/pdf?version=1761301526","source":{"id":"https://openalex.org/S153489431","display_name":"Biology","issn_l":"2079-7737","issn":["2079-7737"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biology","raw_type":"journal-article"},{"id":"pmid:41300277","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41300277","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12649986","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12649986/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biology (Basel)","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:2b48fa37f3954ce8b055dc5df43ccdc7","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/2b48fa37f3954ce8b055dc5df43ccdc7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biology, Vol 14, Iss 11, p 1486 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3390/biology14111486","doi":"https://doi.org/10.3390/biology14111486","is_oa":true,"landing_page_url":"https://doi.org/10.3390/biology14111486","pdf_url":"https://www.mdpi.com/2079-7737/14/11/1486/pdf?version=1761301526","source":{"id":"https://openalex.org/S153489431","display_name":"Biology","issn_l":"2079-7737","issn":["2079-7737"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4415564908.pdf","grobid_xml":"https://content.openalex.org/works/W4415564908.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W1584683177","https://openalex.org/W1964602476","https://openalex.org/W1969311366","https://openalex.org/W1974946101","https://openalex.org/W1981616847","https://openalex.org/W1994858966","https://openalex.org/W1996700726","https://openalex.org/W2000495088","https://openalex.org/W2011657487","https://openalex.org/W2020134788","https://openalex.org/W2027418294","https://openalex.org/W2057964816","https://openalex.org/W2082330286","https://openalex.org/W2085904736","https://openalex.org/W2093877404","https://openalex.org/W2108108770","https://openalex.org/W2110241016","https://openalex.org/W2159038577","https://openalex.org/W2170551349","https://openalex.org/W2185693210","https://openalex.org/W2493763501","https://openalex.org/W2770470977","https://openalex.org/W2799524357","https://openalex.org/W2921582777","https://openalex.org/W2941885741","https://openalex.org/W2947068970","https://openalex.org/W2949086752","https://openalex.org/W2970964661","https://openalex.org/W2996799109","https://openalex.org/W3017049640","https://openalex.org/W3047598142","https://openalex.org/W3083775487","https://openalex.org/W3085758516","https://openalex.org/W3095816599","https://openalex.org/W3207747453","https://openalex.org/W4221033898","https://openalex.org/W4311663808","https://openalex.org/W4385412222","https://openalex.org/W4386416338","https://openalex.org/W4386968677","https://openalex.org/W4387057050","https://openalex.org/W4387079708","https://openalex.org/W4387707674","https://openalex.org/W4392890526","https://openalex.org/W4398139966","https://openalex.org/W4401268545","https://openalex.org/W4401699332","https://openalex.org/W4401844320","https://openalex.org/W4405577560","https://openalex.org/W4408663548","https://openalex.org/W4408784735"],"related_works":["https://openalex.org/W7134063895","https://openalex.org/W4405483444","https://openalex.org/W4415881397","https://openalex.org/W4412185994","https://openalex.org/W4406395667","https://openalex.org/W7125485138","https://openalex.org/W7220913461","https://openalex.org/W7153165929","https://openalex.org/W4404792117","https://openalex.org/W4401844320"],"abstract_inverted_index":{"As":[0],"an":[1],"economically":[2],"important":[3],"species":[4],"endemic":[5],"to":[6,26],"the":[7,73,88,101,116,135,154],"upper":[8],"tributaries":[9],"of":[10,41,46,72,87,94,104,122,158,200],"Yangtze":[11],"River":[12],"in":[13,60,134],"China,":[14],"long-finned":[15],"gudgeon":[16],"fish":[17,203],"(Rhinogobio":[18],"ventralis)":[19],"has":[20],"been":[21],"classified":[22,143],"as":[23],"endangered":[24,202],"due":[25],"habitat":[27],"destruction":[28],"and":[29,49,70,128,180,196],"population":[30,198],"decline.":[31],"In":[32],"this":[33,201],"study,":[34],"we":[35,126],"constructed":[36],"a":[37,188],"chromosome-level":[38],"genome":[39,55,75,90,117],"assembly":[40,56],"R.":[42,136],"ventralis":[43,137],"by":[44],"integration":[45],"MGI,":[47],"PacBio":[48],"Hi-C":[50],"sequencing":[51],"technologies.":[52],"The":[53],"final":[54],"was":[57],"1015.9":[58],"Mb":[59],"length":[61],"(contig":[62],"N50:":[63,67],"25.91":[64],"Mb;":[65],"scaffold":[66],"39.99":[68],"Mb),":[69],"97.19%":[71],"haplotypic":[74],"sequences":[76],"were":[77,98,107,141],"anchored":[78],"onto":[79],"25":[80],"chromosomes.":[81],"Repetitive":[82],"elements":[83],"accounted":[84],"for":[85,100,115,192],"51.00%":[86],"entire":[89],"assembly.":[91,118],"A":[92],"total":[93],"23,220":[95],"protein-coding":[96],"genes":[97,133,140],"predicted":[99],"assembled":[102],"genome,":[103],"which":[105],"99.79%":[106],"functionally":[108],"annotated.":[109],"Genome":[110],"evaluation":[111],"revealed":[112],"99.72%":[113],"completeness":[114],"Through":[119],"genome-wide":[120],"prediction":[121],"antimicrobial":[123],"peptides":[124],"(AMPs),":[125],"identified":[127],"localized":[129],"561":[130],"putative":[131],"AMP-containing":[132],"genome.":[138],"These":[139],"further":[142],"into":[144],"185":[145],"distinct":[146],"functional":[147],"categories":[148],"based":[149],"on":[150],"public":[151],"databases,":[152],"with":[153],"top":[155],"ten":[156],"components":[157],"Penetratin":[159],"(21.74%),":[160],"Histone":[161],"(5.70%),":[162],"E6AP":[163],"(4.09%),":[164],"Scolopendin":[165],"1":[166,175],"(2.67%),":[167],"D38":[168],"(2.31%),":[169],"WBp-1":[170],"(2.13%),":[171,173],"Defensin":[172],"Claudin":[174],"(1.96%),":[176],"Azurocidin":[177],"(AZU1,":[178],"1.78%),":[179],"Ubiquitin":[181],"(1.60%).":[182],"Our":[183],"data":[184],"presented":[185],"here":[186],"provide":[187],"potential":[189],"genetic":[190],"resource":[191],"promoting":[193],"fundamental":[194],"research":[195],"wild":[197],"conservation":[199],"species.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-11-12T12:28:57.059296","created_date":"2025-10-28T00:00:00"}
