{"id":"https://openalex.org/W4414799016","doi":"https://doi.org/10.1007/978-3-032-06066-2_21","title":"Alternate Geometric and Semantic Denoising Diffusion for Protein Inverse Folding","display_name":"Alternate Geometric and Semantic Denoising Diffusion for Protein Inverse Folding","publication_year":2025,"publication_date":"2025-10-03","ids":{"openalex":"https://openalex.org/W4414799016","doi":"https://doi.org/10.1007/978-3-032-06066-2_21"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-032-06066-2_21","doi":"https://doi.org/10.1007/978-3-032-06066-2_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-06066-2_21","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"volume":{"id":"https://openalex.org/W4414788466","display_name":"Machine Learning and Knowledge Discovery in Databases. Research Track"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103196575","display_name":"Chenglin Wang","orcid":"https://orcid.org/0000-0003-1310-2420","observed_orcids":["https://orcid.org/0000-0003-1310-2420"]},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenglin Wang","raw_affiliation_strings":["East China Normal University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101484769","display_name":"Yucheng Zhou","orcid":"https://orcid.org/0000-0001-5797-6221","observed_orcids":["https://orcid.org/0000-0001-5797-6221"]},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Yucheng Zhou","raw_affiliation_strings":["SKL-IOTSC, CIS, University of Macau, Zhuhai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SKL-IOTSC, CIS, University of Macau, Zhuhai, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100621319","display_name":"Zhe Wang","orcid":"https://orcid.org/0000-0002-3759-2041","observed_orcids":["https://orcid.org/0000-0002-3759-2041"]},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhe Wang","raw_affiliation_strings":["East China Normal University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038323599","display_name":"Zijie Zhai","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zijie Zhai","raw_affiliation_strings":["East China Normal University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023184215","display_name":"Jianbing Shen","orcid":"https://orcid.org/0000-0003-2656-3082","observed_orcids":["https://orcid.org/0000-0003-2656-3082","https://orcid.org/0000-0003-1883-2086","https://orcid.org/0000-0002-4109-8353","https://orcid.org/0000-0003-0193-0384","https://orcid.org/0000-0002-4343-623X"]},"institutions":[{"id":"https://openalex.org/I204512498","display_name":"University of Macau","ror":"https://ror.org/01r4q9n85","country_code":"MO","type":"education","lineage":["https://openalex.org/I204512498"]}],"countries":["MO"],"is_corresponding":false,"raw_author_name":"Jianbing Shen","raw_affiliation_strings":["SKL-IOTSC, CIS, University of Macau, Zhuhai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SKL-IOTSC, CIS, University of Macau, Zhuhai, China","institution_ids":["https://openalex.org/I204512498"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100323875","display_name":"Kai Zhang","orcid":"https://orcid.org/0000-0001-5335-2470","observed_orcids":["https://orcid.org/0000-0001-5335-2470","https://orcid.org/0009-0000-6795-1837"]},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kai Zhang","raw_affiliation_strings":["East China Normal University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5100323875"],"corresponding_institution_ids":["https://openalex.org/I66867065"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.9484,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.92576095,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"350","last_page":"366"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9365000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9365000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.048500001430511475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.003599999938160181,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/denoising-diffusion","display_name":"denoising diffusion","score":0.6779999732971191},{"id":"https://openalex.org/keywords/graph-neural-networks","display_name":"graph neural networks","score":0.7580000162124634},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"protein structure prediction","score":0.33500000834465027}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7512999773025513},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.6237000226974487},{"id":"https://openalex.org/C163294075","wikidata":"https://www.wikidata.org/wiki/Q581861","display_name":"Noise reduction","level":2,"score":0.5231000185012817},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5059000253677368},{"id":"https://openalex.org/C207467116","wikidata":"https://www.wikidata.org/wiki/Q4385666","display_name":"Inverse","level":2,"score":0.45399999618530273},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4106999933719635},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.40459999442100525},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.39899998903274536},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39570000767707825},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.35600000619888306},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3434000015258789},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.34150001406669617},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.3402000069618225},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.32199999690055847},{"id":"https://openalex.org/C4668613","wikidata":"https://www.wikidata.org/wiki/Q4116110","display_name":"Structural alignment","level":5,"score":0.31470000743865967},{"id":"https://openalex.org/C135252773","wikidata":"https://www.wikidata.org/wiki/Q1567213","display_name":"Inverse problem","level":2,"score":0.2879999876022339},{"id":"https://openalex.org/C2983327147","wikidata":"https://www.wikidata.org/wiki/Q581861","display_name":"Image denoising","level":3,"score":0.26159998774528503},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.25589999556541443},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.2549000084400177},{"id":"https://openalex.org/C171018156","wikidata":"https://www.wikidata.org/wiki/Q7370306","display_name":"Rotation formalisms in three dimensions","level":2,"score":0.25049999356269836}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-032-06066-2_21","doi":"https://doi.org/10.1007/978-3-032-06066-2_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-032-06066-2_21","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","jufo-1","ki-jl-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1954297438","https://openalex.org/W1973460506","https://openalex.org/W1980471666","https://openalex.org/W2108067237","https://openalex.org/W2126412842","https://openalex.org/W2135987669","https://openalex.org/W2268516362","https://openalex.org/W2790952361","https://openalex.org/W3177828909","https://openalex.org/W3185671814","https://openalex.org/W4223581484","https://openalex.org/W4281790889","https://openalex.org/W4296032638","https://openalex.org/W4312933868","https://openalex.org/W4319071809","https://openalex.org/W4327550249","https://openalex.org/W4372348062","https://openalex.org/W4376117821","https://openalex.org/W4383957026","https://openalex.org/W4386065399","https://openalex.org/W4390872297","https://openalex.org/W4390873054","https://openalex.org/W4402029500","https://openalex.org/W4402774722","https://openalex.org/W4406238135"],"related_works":["https://openalex.org/W4405355205","https://openalex.org/W7133221268","https://openalex.org/W4416932223","https://openalex.org/W7128026408","https://openalex.org/W4411328632","https://openalex.org/W4406238010","https://openalex.org/W4412024386","https://openalex.org/W4389463193","https://openalex.org/W7196979358","https://openalex.org/W7204010024"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2025-10-10T00:00:00"}
