{"id":"https://openalex.org/W4413101033","doi":"https://doi.org/10.1002/fsn3.70772","title":"Can Metagenomic Analyses Be Used Effectively in Safe Food Production?","display_name":"Can Metagenomic Analyses Be Used Effectively in Safe Food Production?","publication_year":2025,"publication_date":"2025-08-01","ids":{"openalex":"https://openalex.org/W4413101033","doi":"https://doi.org/10.1002/fsn3.70772","pmid":"https://pubmed.ncbi.nlm.nih.gov/40786823","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/12331879"},"language":"en","primary_location":{"id":"doi:10.1002/fsn3.70772","doi":"https://doi.org/10.1002/fsn3.70772","is_oa":true,"landing_page_url":"https://doi.org/10.1002/fsn3.70772","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/fsn3.70772","source":{"id":"https://openalex.org/S2764587058","display_name":"Food Science & Nutrition","issn_l":"2048-7177","issn":["2048-7177"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","ki-jl-1","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Food Science & Nutrition","raw_type":"journal-article"},"volume":null,"type":"review","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/fsn3.70772","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015103665","display_name":"Berrak Delikanl\u0131 K\u0131yak","orcid":"https://orcid.org/0000-0001-8093-3369","observed_orcids":["https://orcid.org/0000-0001-8093-3369"]},"institutions":[{"id":"https://openalex.org/I131835042","display_name":"Bursa Uluda\u011f \u00dcni\u0307versi\u0307tesi\u0307","ror":"https://ror.org/03tg3eb07","country_code":"TR","type":"education","lineage":["https://openalex.org/I131835042"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Berrak Delikanli\u2010Kiyak","raw_affiliation_strings":["Food Processing Program, Vocational School of Iznik Bursa Uludag University Ni\u0307l\u00fcfer/Bursa Turkey"],"raw_orcid":"https://orcid.org/0000-0001-8093-3369","affiliations":[{"raw_affiliation_string":"Food Processing Program, Vocational School of Iznik Bursa Uludag University Ni\u0307l\u00fcfer/Bursa Turkey","institution_ids":["https://openalex.org/I131835042"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080491963","display_name":"\u0130lkay Y\u0131lmaz","orcid":"https://orcid.org/0000-0001-5938-3112","observed_orcids":["https://orcid.org/0000-0001-5938-3112"]},"institutions":[{"id":"https://openalex.org/I188740104","display_name":"Ba\u015fkent University","ror":"https://ror.org/02v9bqx10","country_code":"TR","type":"education","lineage":["https://openalex.org/I188740104"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ilkay Yilmaz","raw_affiliation_strings":["Department of Gastronomy and Culinary Arts, Faculty of Fine Arts, Design and Architecture Baskent University Etimesgut/Ankara Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Gastronomy and Culinary Arts, Faculty of Fine Arts, Design and Architecture Baskent University Etimesgut/Ankara Turkey","institution_ids":["https://openalex.org/I188740104"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012950323","display_name":"Metin G\u00fclda\u015f","orcid":"https://orcid.org/0000-0002-5187-9380","observed_orcids":["https://orcid.org/0000-0002-5187-9380"]},"institutions":[{"id":"https://openalex.org/I131835042","display_name":"Bursa Uluda\u011f \u00dcni\u0307versi\u0307tesi\u0307","ror":"https://ror.org/03tg3eb07","country_code":"TR","type":"education","lineage":["https://openalex.org/I131835042"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Met\u0131n Guldas","raw_affiliation_strings":["Department of Nutrition and Dietetics, Faculty of Health Sciences Bursa Uludag University Bursa Turkey"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Nutrition and Dietetics, Faculty of Health Sciences Bursa Uludag University Bursa Turkey","institution_ids":["https://openalex.org/I131835042"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5015103665"],"corresponding_institution_ids":["https://openalex.org/I131835042"],"apc_list":{"value":3630,"currency":"USD","value_usd":3630},"apc_paid":{"value":3630,"currency":"USD","value_usd":3630},"fwci":0.791,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.64011799,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"13","issue":"8","first_page":"e70772","last_page":"e70772"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.29809999465942383,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.29809999465942383,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11957","display_name":"Food Safety and Hygiene","score":0.2337999939918518,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.07689999788999557,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.9879999756813049},{"id":"https://openalex.org/keywords/food-safety","display_name":"food safety","score":0.996999979019165},{"id":"https://openalex.org/keywords/food-microbiota","display_name":"food microbiome","score":0.7680000066757202},{"id":"https://openalex.org/keywords/microbial-community-analysis","display_name":"microbial community analysis","score":0.5730000138282776},{"id":"https://openalex.org/keywords/pathogen-detection","display_name":"pathogen detection","score":0.9330000281333923},{"id":"https://openalex.org/keywords/unculturable-microorganisms","display_name":"unculturable microorganisms","score":0.7820000052452087},{"id":"https://openalex.org/keywords/foodborne-pathogens","display_name":"foodborne pathogens","score":0.6010000109672546},{"id":"https://openalex.org/keywords/food-quality-control","display_name":"food quality control","score":0.3930000066757202}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9138288497924805},{"id":"https://openalex.org/C83867959","wikidata":"https://www.wikidata.org/wiki/Q371467","display_name":"Scopus","level":3,"score":0.6822732090950012},{"id":"https://openalex.org/C516717267","wikidata":"https://www.wikidata.org/wiki/Q909821","display_name":"Food safety","level":2,"score":0.6507471203804016},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6314573287963867},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.5009651184082031},{"id":"https://openalex.org/C3020774429","wikidata":"https://www.wikidata.org/wiki/Q1201886","display_name":"Web of science","level":3,"score":0.46989011764526367},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.44240570068359375},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.3610122799873352},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3386358618736267},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.32530009746551514},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.13710349798202515},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1002/fsn3.70772","doi":"https://doi.org/10.1002/fsn3.70772","is_oa":true,"landing_page_url":"https://doi.org/10.1002/fsn3.70772","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/fsn3.70772","source":{"id":"https://openalex.org/S2764587058","display_name":"Food Science & Nutrition","issn_l":"2048-7177","issn":["2048-7177"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","ki-jl-1","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Food Science & Nutrition","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12331879","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12331879","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Food Sci Nutr","raw_type":"Text"},{"id":"pmid:40786823","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40786823","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Food science & nutrition","raw_type":"Journal Article"},{"id":"pmh:88a1e2f6-0b69-4650-90d0-bf44044060fa","doi":null,"is_oa":false,"landing_page_url":"https://avesis.uludag.edu.tr/publication/details/88a1e2f6-0b69-4650-90d0-bf44044060fa/oai","pdf_url":null,"source":{"id":"https://openalex.org/S7407055210","display_name":"Bursa Uludag University - AVESIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1002/fsn3.70772","doi":"https://doi.org/10.1002/fsn3.70772","is_oa":true,"landing_page_url":"https://doi.org/10.1002/fsn3.70772","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1002/fsn3.70772","source":{"id":"https://openalex.org/S2764587058","display_name":"Food Science & Nutrition","issn_l":"2048-7177","issn":["2048-7177"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","ki-jl-1","norway-1","poland-100","russia-white-list-2"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Food Science & Nutrition","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.9208999872207642,"display_name":"Zero hunger"},{"id":"https://metadata.un.org/sdg/3","score":0.7246000170707703,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413101033.pdf","grobid_xml":"https://content.openalex.org/works/W4413101033.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W2075716829","https://openalex.org/W2151748773","https://openalex.org/W2165108567","https://openalex.org/W2216601860","https://openalex.org/W2556338575","https://openalex.org/W2626316678","https://openalex.org/W2758005814","https://openalex.org/W2806408903","https://openalex.org/W2899266853","https://openalex.org/W2901550377","https://openalex.org/W2953082023","https://openalex.org/W2993621518","https://openalex.org/W3007091919","https://openalex.org/W3011582520","https://openalex.org/W3013121846","https://openalex.org/W3013581251","https://openalex.org/W3014806259","https://openalex.org/W3024376490","https://openalex.org/W3035122709","https://openalex.org/W3040792441","https://openalex.org/W3048756544","https://openalex.org/W3048920336","https://openalex.org/W3081262894","https://openalex.org/W3090759441","https://openalex.org/W3120974398","https://openalex.org/W3128392697","https://openalex.org/W3135997498","https://openalex.org/W3141171859","https://openalex.org/W3153636427","https://openalex.org/W3155098572","https://openalex.org/W3176449052","https://openalex.org/W3204085888","https://openalex.org/W3209028110","https://openalex.org/W3209378281","https://openalex.org/W3215840012","https://openalex.org/W4200516736","https://openalex.org/W4200618192","https://openalex.org/W4220708309","https://openalex.org/W4220803108","https://openalex.org/W4220990048","https://openalex.org/W4223437724","https://openalex.org/W4224307032","https://openalex.org/W4250394591","https://openalex.org/W4291991898","https://openalex.org/W4298393843","https://openalex.org/W4307268214","https://openalex.org/W4310086037","https://openalex.org/W4311325566","https://openalex.org/W4311719870","https://openalex.org/W4313855864","https://openalex.org/W4315701506","https://openalex.org/W4319787283","https://openalex.org/W4321447650","https://openalex.org/W4377940838","https://openalex.org/W4378349563","https://openalex.org/W4378470445","https://openalex.org/W4382561876","https://openalex.org/W4384341779","https://openalex.org/W4385690119","https://openalex.org/W4388017559","https://openalex.org/W4388211496","https://openalex.org/W4388617915","https://openalex.org/W4388942246","https://openalex.org/W4390061490","https://openalex.org/W4390064099","https://openalex.org/W4390265580","https://openalex.org/W4390452586","https://openalex.org/W4390706116","https://openalex.org/W4391708409","https://openalex.org/W4392163362","https://openalex.org/W4392245545","https://openalex.org/W4392353117","https://openalex.org/W4392457329","https://openalex.org/W4392518334","https://openalex.org/W4393060179","https://openalex.org/W4393237546","https://openalex.org/W4393409984","https://openalex.org/W4394875763","https://openalex.org/W4395670745","https://openalex.org/W4396622387","https://openalex.org/W4396790940","https://openalex.org/W4396796658","https://openalex.org/W4399056415","https://openalex.org/W4399057129","https://openalex.org/W4399360311","https://openalex.org/W4400651174","https://openalex.org/W4406048824","https://openalex.org/W4406316107","https://openalex.org/W4406701418","https://openalex.org/W4407030513","https://openalex.org/W4408032381","https://openalex.org/W4408781393","https://openalex.org/W4410038080","https://openalex.org/W4410095749","https://openalex.org/W4410693739","https://openalex.org/W4410719088","https://openalex.org/W6892496984"],"related_works":["https://openalex.org/W3205445478","https://openalex.org/W3209028110","https://openalex.org/W7117970451","https://openalex.org/W4404474850","https://openalex.org/W4406474772","https://openalex.org/W3045804695","https://openalex.org/W4402025379","https://openalex.org/W4408032381","https://openalex.org/W2738166853","https://openalex.org/W1654854773"],"abstract_inverted_index":{"This":[0,142,254],"review":[1,255],"aims":[2],"to":[3,69,76,125,132,146,188,284],"bring":[4],"together":[5,257],"current":[6,258],"research":[7,259],"on":[8,206,242,260],"the":[9,29,32,37,60,78,87,147,198,204,216,234,237,251,261],"importance,":[10],"recent":[11,57],"applications,":[12,271],"and":[13,19,35,59,80,85,113,158,201,203,213,220,240,245,272],"possible":[14,273],"impacts":[15],"of":[16,28,31,48,82,116,150,164,218,263],"metagenomic":[17,22,151,173],"analysis":[18,27,265],"emphasize":[20],"that":[21,135],"analyses,":[23,152],"which":[24,153],"provide":[25,159],"direct":[26,155],"genomes":[30],"food":[33,49,72,83,106,168,190,267],"itself":[34],"all":[36],"microbiota":[38],"in":[39,56,167,209,215,266,288],"its":[40,269],"environment,":[41],"are":[42,136],"revolutionary":[43],"approach":[44],"for":[45,195,233,281],"effective":[46],"management":[47],"safety":[50,81,107],"requirements.":[51],"The":[52,225,275],"increasing":[53,148],"health":[54,88],"problems":[55],"years":[58,226],"related":[61],"developments":[62],"regarding":[63],"nutritional":[64],"awareness":[65],"have":[66],"led":[67,145],"people":[68],"seek":[70],"safe":[71],"consumption.":[73],"In":[74,109,170,192],"order":[75],"ensure":[77,189],"quality":[79],"products":[84],"protect":[86],"consumers":[89],"worldwide,":[90],"necessary":[91],"preventive":[92],"measure":[93],"should":[94],"be":[95,126,140,184,285],"taken":[96,229],"by":[97],"conducting":[98],"innovative":[99],"control":[100],"methods.":[101],"Numerous":[102],"microbial":[103,165],"hazards":[104],"threaten":[105],"worldwide.":[108],"this":[110,171,193,196,289],"respect,":[111],"rapid":[112],"accurate":[114],"detection":[115,157],"pathogens":[117],"is":[118,277],"critical.":[119],"Although":[120],"traditional":[121],"culture-based":[122],"methods":[123],"continue":[124],"widely":[127],"used,":[128],"they":[129],"often":[130],"fail":[131],"detect":[133],"organisms":[134],"viable":[137],"but":[138],"cannot":[139],"cultured.":[141],"limitation":[143],"has":[144,178],"adoption":[149],"allow":[154],"genome-level":[156],"a":[160,185,231,278],"more":[161],"comprehensive":[162],"view":[163],"communities":[166],"systems.":[169],"context,":[172],"analyses":[174],"within":[175],"new-generation":[176],"technology":[177],"been":[179],"inspired,":[180],"as":[181,230],"it":[182],"can":[183],"powerful":[186],"tool":[187],"safety.":[191],"study,":[194],"purpose,":[197],"keywords":[199,238],"'metagenomics":[200],"food'":[202],"studies":[205,235,241,283],"metagenomics":[207,264],"published":[208],"English,":[210],"peer-reviewed":[211],"journals,":[212],"available":[214],"Web":[217],"Science":[219],"Scopus":[221],"databases":[222],"were":[223,228,248],"investigated.":[224],"2020-2024":[227],"basis":[232],"with":[236],"identified":[239],"antibiotic":[243],"resistance":[244],"unrelated":[246],"foods":[247],"excluded":[249],"from":[250],"review's":[252],"scope.":[253],"brings":[256],"significance":[262],"safety,":[268],"latest":[270],"effects.":[274],"study":[276],"reference":[279],"source":[280],"potential":[282],"carried":[286],"out":[287],"context.":[290]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":2}],"updated_date":"2026-10-30T12:39:25.321706","created_date":"2025-10-10T00:00:00"}