{"id":"https://openalex.org/W4409508763","doi":"https://doi.org/10.1038/s42003-025-08029-4","title":"Chromosome-level genome assembly reveals adaptive evolution of the invasive Amazon sailfin catfish (Pterygoplichthys pardalis)","display_name":"Chromosome-level genome assembly reveals adaptive evolution of the invasive Amazon sailfin catfish (Pterygoplichthys pardalis)","publication_year":2025,"publication_date":"2025-04-16","ids":{"openalex":"https://openalex.org/W4409508763","doi":"https://doi.org/10.1038/s42003-025-08029-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/40240788","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/12003874"},"language":"en","primary_location":{"id":"doi:10.1038/s42003-025-08029-4","doi":"https://doi.org/10.1038/s42003-025-08029-4","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42003-025-08029-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210225776","display_name":"Communications Biology","issn_l":"2399-3642","issn":["2399-3642"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","jufo-1","ki-jl-2","medline","norway-1","oarl","poland-20","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications Biology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1038/s42003-025-08029-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004446560","display_name":"Yunyun Lv","orcid":"https://orcid.org/0009-0003-4941-268X","observed_orcids":["https://orcid.org/0009-0003-4941-268X"]},"institutions":[{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yunyun Lv","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China. lvyunyun_sci@foxmail.com"],"raw_orcid":"https://orcid.org/0009-0003-4941-268X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China. lvyunyun_sci@foxmail.com","institution_ids":["https://openalex.org/I4210117337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100385642","display_name":"Yanping Li","orcid":"https://orcid.org/0000-0002-5771-0252","observed_orcids":["https://orcid.org/0000-0002-5771-0252","https://orcid.org/0000-0002-9857-9019"]},"institutions":[{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanping Li","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China","institution_ids":["https://openalex.org/I4210117337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100660280","display_name":"Miao Fang","orcid":"https://orcid.org/0000-0002-0924-8323","observed_orcids":["https://orcid.org/0000-0002-0924-8323"]},"institutions":[{"id":"https://openalex.org/I4405260819","display_name":"Pearl River Fisheries Research Institute","ror":"https://ror.org/04and7w57","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I4405260819","https://openalex.org/I46529539"]},{"id":"https://openalex.org/I46529539","display_name":"Chinese Academy of Fishery Sciences","ror":"https://ror.org/02bwk9n38","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I46529539"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Miao Fang","raw_affiliation_strings":["Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China","institution_ids":["https://openalex.org/I4405260819","https://openalex.org/I46529539"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yi Liu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405260819","display_name":"Pearl River Fisheries Research Institute","ror":"https://ror.org/04and7w57","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I4405260819","https://openalex.org/I46529539"]},{"id":"https://openalex.org/I46529539","display_name":"Chinese Academy of Fishery Sciences","ror":"https://ror.org/02bwk9n38","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I46529539"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Liu","raw_affiliation_strings":["Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China","institution_ids":["https://openalex.org/I4405260819","https://openalex.org/I46529539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100423135","display_name":"Yuanyuan Wang","orcid":"https://orcid.org/0000-0001-9472-8606","observed_orcids":["https://orcid.org/0000-0001-9472-8606"]},"institutions":[{"id":"https://openalex.org/I4405260819","display_name":"Pearl River Fisheries Research Institute","ror":"https://ror.org/04and7w57","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I4405260819","https://openalex.org/I46529539"]},{"id":"https://openalex.org/I46529539","display_name":"Chinese Academy of Fishery Sciences","ror":"https://ror.org/02bwk9n38","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I46529539"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanyuan Wang","raw_affiliation_strings":["Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China","institution_ids":["https://openalex.org/I4405260819","https://openalex.org/I46529539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101650603","display_name":"Yexin Yang","orcid":"https://orcid.org/0000-0001-7651-2940","observed_orcids":["https://orcid.org/0000-0001-7651-2940"]},"institutions":[{"id":"https://openalex.org/I4405260819","display_name":"Pearl River Fisheries Research Institute","ror":"https://ror.org/04and7w57","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I4405260819","https://openalex.org/I46529539"]},{"id":"https://openalex.org/I46529539","display_name":"Chinese Academy of Fishery Sciences","ror":"https://ror.org/02bwk9n38","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I46529539"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yexin Yang","raw_affiliation_strings":["Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China","institution_ids":["https://openalex.org/I4405260819","https://openalex.org/I46529539"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104592983","display_name":"Yuanchao Zou","orcid":"https://orcid.org/0000-0003-3738-2711","observed_orcids":["https://orcid.org/0000-0003-3738-2711"]},"institutions":[{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanchao Zou","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China","institution_ids":["https://openalex.org/I4210117337"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025396939","display_name":"Qiong Shi","orcid":"https://orcid.org/0000-0002-6358-976X","observed_orcids":["https://orcid.org/0000-0002-6358-976X"]},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I4210117337","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210117337"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiong Shi","raw_affiliation_strings":["Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China. shiqiong@szu.edu.cn","Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518067, China. shiqiong@szu.edu.cn"],"raw_orcid":"https://orcid.org/0000-0002-6358-976X","affiliations":[{"raw_affiliation_string":"Key Laboratory of Sichuan Province for Fishes Conservation and Utilization in the Upper Reaches of the Yangtze River, College of Life Science, Neijiang Normal University, Neijiang, 641100, China. shiqiong@szu.edu.cn","institution_ids":["https://openalex.org/I4210117337"]},{"raw_affiliation_string":"Laboratory of Aquatic Genomics, College of Life Sciences and Oceanography, Shenzhen University, Shenzhen, 518067, China. shiqiong@szu.edu.cn","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028472206","display_name":"Xidong Mu","orcid":"https://orcid.org/0000-0003-4091-7430","observed_orcids":["https://orcid.org/0000-0003-4091-7430"]},"institutions":[{"id":"https://openalex.org/I4405260819","display_name":"Pearl River Fisheries Research Institute","ror":"https://ror.org/04and7w57","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I4405260819","https://openalex.org/I46529539"]},{"id":"https://openalex.org/I46529539","display_name":"Chinese Academy of Fishery Sciences","ror":"https://ror.org/02bwk9n38","country_code":"CN","type":"nonprofit","lineage":["https://openalex.org/I4210127390","https://openalex.org/I4210151987","https://openalex.org/I46529539"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xidong Mu","raw_affiliation_strings":["Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China. muxd@prfri.ac.cn"],"raw_orcid":"https://orcid.org/0000-0003-4091-7430","affiliations":[{"raw_affiliation_string":"Key Laboratory of Prevention and Control for Aquatic Invasive Alien Species, Ministry of Agriculture and Rural Affairs, Guangdong Modern Recreational Fisheries Engineering Technology Center, Pearl River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Guangzhou, China. muxd@prfri.ac.cn","institution_ids":["https://openalex.org/I4405260819","https://openalex.org/I46529539"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5004446560","https://openalex.org/A5025396939","https://openalex.org/A5028472206"],"corresponding_institution_ids":["https://openalex.org/I180726961","https://openalex.org/I4210117337","https://openalex.org/I4405260819","https://openalex.org/I46529539"],"apc_list":{"value":4190,"currency":"USD","value_usd":4190},"apc_paid":{"value":4190,"currency":"USD","value_usd":4190},"fwci":2.7328,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.89897564,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"8","issue":"1","first_page":"616","last_page":"616"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9556000232696533,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9556000232696533,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.038100000470876694,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.0013000000035390258,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pterygoplichthys-pardalis","display_name":"Pterygoplichthys pardalis","score":0.9909999966621399},{"id":"https://openalex.org/keywords/invasive-species","display_name":"invasive species","score":0.6779999732971191},{"id":"https://openalex.org/keywords/chromosome-level-genome-assembly","display_name":"chromosome-level genome assembly","score":0.7300000190734863},{"id":"https://openalex.org/keywords/loricariidae","display_name":"Loricariidae","score":0.8330000042915344},{"id":"https://openalex.org/keywords/microchromosomes","display_name":"microchromosomes","score":0.9010000228881836},{"id":"https://openalex.org/keywords/genome-expansion","display_name":"genome expansion","score":0.550000011920929},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"gene duplication","score":0.9440000057220459},{"id":"https://openalex.org/keywords/immune-related-genes","display_name":"immune-related genes","score":0.6940000057220459},{"id":"https://openalex.org/keywords/conserved-non-coding-sequences","display_name":"conserved non-coding elements","score":0.9959999918937683},{"id":"https://openalex.org/keywords/positive-selection","display_name":"positive selection","score":0.9679999947547913},{"id":"https://openalex.org/keywords/collagen-genes","display_name":"collagen genes","score":0.7739999890327454},{"id":"https://openalex.org/keywords/hoxb9","display_name":"HOXB9","score":0.9879999756813049},{"id":"https://openalex.org/keywords/adaptive-evolution","display_name":"adaptive evolution","score":0.7239999771118164}],"concepts":[{"id":"https://openalex.org/C2778189562","wikidata":"https://www.wikidata.org/wiki/Q59576","display_name":"Catfish","level":3,"score":0.939500629901886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7028189897537231},{"id":"https://openalex.org/C535291247","wikidata":"https://www.wikidata.org/wiki/Q177567","display_name":"Amazon rainforest","level":2,"score":0.5584692358970642},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.5026028156280518},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.41984260082244873},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.3684867024421692},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.3306877613067627},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.33039674162864685},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.328144371509552},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2229733169078827},{"id":"https://openalex.org/C2909208804","wikidata":"https://www.wikidata.org/wiki/Q127282","display_name":"Fish <Actinopterygii>","level":2,"score":0.20403537154197693},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.11036744713783264}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002397","descriptor_name":"Catfishes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058865","descriptor_name":"Introduced Species","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1038/s42003-025-08029-4","doi":"https://doi.org/10.1038/s42003-025-08029-4","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42003-025-08029-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210225776","display_name":"Communications Biology","issn_l":"2399-3642","issn":["2399-3642"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","jufo-1","ki-jl-2","medline","norway-1","oarl","poland-20","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications Biology","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12003874","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12003874/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12003874/pdf/","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Commun Biol","raw_type":"Text"},{"id":"pmid:40240788","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40240788","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications biology","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:3315f7c281db413996543c691851b5f5","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/3315f7c281db413996543c691851b5f5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Communications Biology, Vol 8, Iss 1, Pp 1-15 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s42003-025-08029-4","doi":"https://doi.org/10.1038/s42003-025-08029-4","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s42003-025-08029-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210225776","display_name":"Communications Biology","issn_l":"2399-3642","issn":["2399-3642"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","jufo-1","ki-jl-2","medline","norway-1","oarl","poland-20","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2911281550","display_name":null,"funder_award_id":"510380","funder_id":"https://openalex.org/F4320335070","funder_display_name":"Chinese Academy of Fishery Sciences"},{"id":"https://openalex.org/G5792199236","display_name":null,"funder_award_id":"20230303","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7178880222","display_name":null,"funder_award_id":"X23B0002","funder_id":"https://openalex.org/F4320327787","funder_display_name":"Neijiang Normal University"},{"id":"https://openalex.org/G755024558","display_name":null,"funder_award_id":"32200347","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322736","display_name":"Ministry of Agriculture of the People's Republic of China","ror":"https://ror.org/05ckt8b96"},{"id":"https://openalex.org/F4320327287","display_name":"Ministry of Agriculture and Rural Affairs of the People's Republic of China","ror":null},{"id":"https://openalex.org/F4320327787","display_name":"Neijiang Normal University","ror":"https://ror.org/02bc8tz70"},{"id":"https://openalex.org/F4320335070","display_name":"Chinese Academy of Fishery Sciences","ror":"https://ror.org/02bwk9n38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4409508763.pdf","grobid_xml":"https://content.openalex.org/works/W4409508763.grobid-xml"},"referenced_works_count":110,"referenced_works":["https://openalex.org/W1484347389","https://openalex.org/W1704167850","https://openalex.org/W1767772592","https://openalex.org/W1974313653","https://openalex.org/W1982372752","https://openalex.org/W1982855075","https://openalex.org/W1986731702","https://openalex.org/W1993807753","https://openalex.org/W1996700726","https://openalex.org/W2008856488","https://openalex.org/W2020134788","https://openalex.org/W2027300473","https://openalex.org/W2036850921","https://openalex.org/W2044071197","https://openalex.org/W2046183549","https://openalex.org/W2052233237","https://openalex.org/W2061041720","https://openalex.org/W2071501400","https://openalex.org/W2081946704","https://openalex.org/W2087368694","https://openalex.org/W2102619694","https://openalex.org/W2106678197","https://openalex.org/W2108108770","https://openalex.org/W2110335151","https://openalex.org/W2115011276","https://openalex.org/W2116744776","https://openalex.org/W2126419817","https://openalex.org/W2131148812","https://openalex.org/W2131918846","https://openalex.org/W2136145671","https://openalex.org/W2136578623","https://openalex.org/W2141052558","https://openalex.org/W2141165178","https://openalex.org/W2141477609","https://openalex.org/W2146127418","https://openalex.org/W2148698435","https://openalex.org/W2151928790","https://openalex.org/W2155813163","https://openalex.org/W2159038577","https://openalex.org/W2159082357","https://openalex.org/W2160378127","https://openalex.org/W2166825456","https://openalex.org/W2181647667","https://openalex.org/W2183013629","https://openalex.org/W2192708678","https://openalex.org/W2232237847","https://openalex.org/W2290526242","https://openalex.org/W2293840722","https://openalex.org/W2296550515","https://openalex.org/W2303521084","https://openalex.org/W2369729543","https://openalex.org/W2415222449","https://openalex.org/W2493763501","https://openalex.org/W2562059942","https://openalex.org/W2584829257","https://openalex.org/W2604308930","https://openalex.org/W2737892318","https://openalex.org/W2786089085","https://openalex.org/W2804523376","https://openalex.org/W2807993805","https://openalex.org/W2889990268","https://openalex.org/W2891701522","https://openalex.org/W2892435532","https://openalex.org/W2894335751","https://openalex.org/W2899754375","https://openalex.org/W2902181701","https://openalex.org/W2903125175","https://openalex.org/W2908509737","https://openalex.org/W2924104347","https://openalex.org/W2941085932","https://openalex.org/W2957754845","https://openalex.org/W2998216212","https://openalex.org/W3005422629","https://openalex.org/W3011688780","https://openalex.org/W3017049640","https://openalex.org/W3024597931","https://openalex.org/W3047598142","https://openalex.org/W3048751908","https://openalex.org/W3085758516","https://openalex.org/W3100651612","https://openalex.org/W3107701527","https://openalex.org/W3124073898","https://openalex.org/W3175616293","https://openalex.org/W3175752499","https://openalex.org/W3185785751","https://openalex.org/W3198242174","https://openalex.org/W3203343200","https://openalex.org/W3206010035","https://openalex.org/W3210280275","https://openalex.org/W3213630715","https://openalex.org/W4214628799","https://openalex.org/W4286498619","https://openalex.org/W4294151650","https://openalex.org/W4303579431","https://openalex.org/W4310779057","https://openalex.org/W4311663808","https://openalex.org/W4320483686","https://openalex.org/W4321497297","https://openalex.org/W4360820529","https://openalex.org/W4372286473","https://openalex.org/W4376630052","https://openalex.org/W4378782198","https://openalex.org/W4381334464","https://openalex.org/W4386648673","https://openalex.org/W4388142100","https://openalex.org/W4389334242","https://openalex.org/W4390585216","https://openalex.org/W4394840209","https://openalex.org/W4400916876","https://openalex.org/W6902443019"],"related_works":["https://openalex.org/W4310537490","https://openalex.org/W4411885513","https://openalex.org/W7168037611","https://openalex.org/W4321365854","https://openalex.org/W2007792897","https://openalex.org/W7161803792","https://openalex.org/W3111893002","https://openalex.org/W4376630052","https://openalex.org/W2042148487","https://openalex.org/W4200386274"],"abstract_inverted_index":{"Catfish":[0],"represents":[1],"a":[2,48,59,68],"diverse":[3],"lineage":[4],"with":[5,13,67,119,144,201],"variable":[6],"number":[7],"of":[8,52,61,88,159],"chromosomes":[9,87],"and":[10,94,100,135,155,180,186],"complex":[11],"relationships":[12],"humans.":[14],"Although":[15],"certain":[16],"species":[17],"pose":[18],"significant":[19],"invasive":[20,228],"threats":[21],"to":[22,35,130,198,216],"native":[23],"fish":[24],"populations,":[25],"comprehensive":[26,69],"genomic":[27,71,76],"investigations":[28],"into":[29,223],"the":[30,53,62,84,109,152,156,160,191],"evolutionary":[31],"adaptations":[32,225],"that":[33,96,108,230],"contribute":[34],"their":[36],"invasion":[37,235],"success":[38],"are":[39,142],"lacking.":[40],"To":[41],"address":[42],"this":[43],"gap,":[44],"our":[45],"study":[46],"presents":[47],"high-quality":[49],"genome":[50,113,126,195],"assembly":[51],"Amazon":[54,110,192],"sailfin":[55,111,193],"catfish":[56,64,80,112,194,229],"(Pterygoplichthys":[57],"pardalis),":[58],"member":[60],"armored":[63],"family,":[65],"along":[66],"comparative":[70],"analysis.":[72],"By":[73],"utilizing":[74],"conserved":[75],"regions":[77],"across":[78,103],"different":[79,98],"species,":[81],"we":[82,205],"reconstructed":[83],"29":[85],"ancestral":[86],"catfish,":[89],"including":[90,147],"two":[91],"microchromosomes":[92],"(28":[93],"29)":[95],"show":[97],"fusion":[99],"breakage":[101],"patterns":[102],"species.":[104],"Our":[105],"analysis":[106],"shows":[107],"is":[114],"notably":[115],"larger":[116],"(1.58":[117],"Gb)":[118],"more":[120],"than":[121],"40,000":[122],"coding":[123],"genes.":[124],"The":[125],"expansion":[127,158],"was":[128],"linked":[129],"early":[131],"repetitive":[132],"sequence":[133],"expansions":[134],"recent":[136],"gene":[137,162],"duplications.":[138],"Several":[139],"expanded":[140],"genes":[141,175,189],"associated":[143,200],"immune":[145],"functions,":[146],"antigen":[148],"recognition":[149],"domains":[150],"like":[151],"Ig-v-set":[153],"domain":[154],"tandem":[157],"CD300":[161],"family.":[163],"We":[164],"also":[165],"identified":[166,206],"specific":[167],"insertions":[168],"in":[169,177,190,211,226],"CNEs":[170],"(conserved":[171],"non-coding":[172],"elements)":[173],"near":[174],"involved":[176],"cellular":[178],"processes":[179],"neural":[181],"development.":[182],"Additionally,":[183],"rapidly":[184],"evolving":[185],"positively":[187,208],"selected":[188,209],"were":[196],"found":[197],"be":[199],"collagen":[202],"formation.":[203],"Moreover,":[204],"multiple":[207],"codons":[210],"hoxb9,":[212],"which":[213],"may":[214,231],"lead":[215],"functional":[217],"alterations.":[218],"These":[219],"findings":[220],"provide":[221],"insights":[222],"molecular":[224],"an":[227],"underlie":[232],"its":[233],"widespread":[234],"success.":[236]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":1}],"updated_date":"2026-11-12T12:28:57.059296","created_date":"2025-04-17T00:00:00"}
