{"id":"https://openalex.org/W4404568232","doi":"https://doi.org/10.1038/s41598-024-79768-3","title":"Chromosome scale genome assembly and annotation of coconut cultivar Chowghat Green Dwarf","display_name":"Chromosome scale genome assembly and annotation of coconut cultivar Chowghat Green Dwarf","publication_year":2024,"publication_date":"2024-11-20","ids":{"openalex":"https://openalex.org/W4404568232","doi":"https://doi.org/10.1038/s41598-024-79768-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/39567709","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/11579352"},"language":"en","primary_location":{"id":"doi:10.1038/s41598-024-79768-3","doi":"https://doi.org/10.1038/s41598-024-79768-3","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1038/s41598-024-79768-3","pdf_url":"https://www.nature.com/articles/s41598-024-79768-3.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41598-024-79768-3.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074823715","display_name":"M. K. Rajesh","orcid":"https://orcid.org/0000-0003-3815-0365","observed_orcids":["https://orcid.org/0000-0003-3815-0365"]},"institutions":[{"id":"https://openalex.org/I179420787","display_name":"Indian Council of Agricultural Research","ror":"https://ror.org/04fw54a43","country_code":"IN","type":"government","lineage":["https://openalex.org/I179420787"]},{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"M. K. Rajesh","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India. rajesh.mk@icar.gov.in","ICAR-Central Plantation Crops Research Institute, Regional Station, Vittal, Karnataka, 574243, India. rajesh.mk@icar.gov.in","ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India. rajesh.mk@icar.gov.in","institution_ids":["https://openalex.org/I4210142041"]},{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Regional Station, Vittal, Karnataka, 574243, India. rajesh.mk@icar.gov.in","institution_ids":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]},{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India","institution_ids":["https://openalex.org/I4210142041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055749313","display_name":"Roli Budhwar","orcid":"https://orcid.org/0000-0001-8494-1606","observed_orcids":["https://orcid.org/0000-0001-8494-1606"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roli Budhwar","raw_affiliation_strings":["Bionivid Technology [P] Limited, Bengaluru, Karnataka, 560064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bionivid Technology [P] Limited, Bengaluru, Karnataka, 560064, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051211211","display_name":"Rohit Nandan Shukla","orcid":"https://orcid.org/0000-0001-8279-5377","observed_orcids":["https://orcid.org/0000-0001-8279-5377"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rohit Shukla","raw_affiliation_strings":["Bionivid Technology [P] Limited, Bengaluru, Karnataka, 560064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bionivid Technology [P] Limited, Bengaluru, Karnataka, 560064, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029984375","display_name":"Praveen Kumar Oraon","orcid":"https://orcid.org/0000-0001-6712-1112","observed_orcids":["https://orcid.org/0000-0001-6712-1112"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Praveen Kumar Oraon","raw_affiliation_strings":["Bionivid Technology [P] Limited, Bengaluru, Karnataka, 560064, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bionivid Technology [P] Limited, Bengaluru, Karnataka, 560064, India","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068152228","display_name":"Shailendra Goel","orcid":"https://orcid.org/0000-0002-8731-8892","observed_orcids":["https://orcid.org/0000-0002-8731-8892"]},"institutions":[{"id":"https://openalex.org/I110166357","display_name":"University of Delhi","ror":"https://ror.org/04gzb2213","country_code":"IN","type":"education","lineage":["https://openalex.org/I110166357"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shailendra Goel","raw_affiliation_strings":["Department of Botany, University of Delhi, Delhi, 110007, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany, University of Delhi, Delhi, 110007, India","institution_ids":["https://openalex.org/I110166357"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075398502","display_name":"Bobby Paul","orcid":"https://orcid.org/0000-0002-7212-1886","observed_orcids":["https://orcid.org/0000-0002-7212-1886"]},"institutions":[{"id":"https://openalex.org/I164861460","display_name":"Manipal Academy of Higher Education","ror":"https://ror.org/02xzytt36","country_code":"IN","type":"education","lineage":["https://openalex.org/I164861460"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Bobby Paul","raw_affiliation_strings":["Department of Bioinformatics, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, Manipal School of Life Sciences, Manipal Academy of Higher Education, Manipal, Karnataka, 576104, India","institution_ids":["https://openalex.org/I164861460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103836622","display_name":"Regi J. Thomas","orcid":"https://orcid.org/0000-0001-6406-9945","observed_orcids":["https://orcid.org/0000-0001-6406-9945"]},"institutions":[{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Regi Jacob Thomas","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Regional Station, Kayamkulam, Kerala, 690533, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Regional Station, Kayamkulam, Kerala, 690533, India","institution_ids":["https://openalex.org/I4210142041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111328106","display_name":"Akshay Dinesh","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Akshay Dinesh","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India","institution_ids":["https://openalex.org/I4210142041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075694344","display_name":"S. Jayasekhar","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"S. Jayasekhar","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India","institution_ids":["https://openalex.org/I4210142041"]}]},{"author_position":"middle","author":{"id":null,"display_name":"K. P. Chandran","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"K. P. Chandran","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India","institution_ids":["https://openalex.org/I4210142041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108760739","display_name":"Kilingar Subrahmanya Muralikrishna","orcid":"https://orcid.org/0000-0001-7931-5379","observed_orcids":["https://orcid.org/0000-0001-7931-5379"]},"institutions":[{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"K. S. Muralikrishna","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India","institution_ids":["https://openalex.org/I4210142041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013683040","display_name":"B. J. Nirmal Kumar","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"B. J. Nirmal Kumar","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Kasaragod, Kerala, 671124, India","institution_ids":["https://openalex.org/I4210142041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102393748","display_name":"Alpana Das","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210142041","display_name":"Central Plantation Crops Research Institute","ror":"https://ror.org/052afrt88","country_code":"IN","type":"facility","lineage":["https://openalex.org/I179420787","https://openalex.org/I4210142041"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Alpana Das","raw_affiliation_strings":["ICAR-Central Plantation Crops Research Institute, Research Centre, Kahikuchi, Assam, 781017, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ICAR-Central Plantation Crops Research Institute, Research Centre, Kahikuchi, Assam, 781017, India","institution_ids":["https://openalex.org/I4210142041"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5074823715"],"corresponding_institution_ids":["https://openalex.org/I179420787","https://openalex.org/I4210142041"],"apc_list":{"value":2590,"currency":"USD","value_usd":2590},"apc_paid":{"value":2590,"currency":"USD","value_usd":2590},"fwci":0.8289,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.66597296,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"14","issue":"1","first_page":"28778","last_page":"28778"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13361","display_name":"Coconut Research and Applications","score":0.6791999936103821,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13361","display_name":"Coconut Research and Applications","score":0.6791999936103821,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.21549999713897705,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.09200000017881393,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coconut","display_name":"coconut","score":0.8809999823570251},{"id":"https://openalex.org/keywords/coconut-palm","display_name":"Cocos nucifera","score":1.0},{"id":"https://openalex.org/keywords/chromosome-level-genome-assembly","display_name":"chromosome-level genome assembly","score":0.8930000066757202},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.8330000042915344},{"id":"https://openalex.org/keywords/long-terminal-repeat","display_name":"long terminal repeat","score":0.800000011920929},{"id":"https://openalex.org/keywords/ltr-retrotransposons","display_name":"LTR retrotransposons","score":0.906000018119812},{"id":"https://openalex.org/keywords/whole-genome-doubling","display_name":"whole-genome duplication","score":0.878000020980835},{"id":"https://openalex.org/keywords/repetitive-dna","display_name":"repetitive DNA","score":0.6439999938011169},{"id":"https://openalex.org/keywords/genome-browser","display_name":"genome browser","score":0.41999998688697815}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8612096309661865},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7529470920562744},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.5674825310707092},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5580856800079346},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.542582094669342},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.5351945161819458},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.5218485593795776},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4945985972881317},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.48502296209335327},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4830354154109955},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.48212337493896484},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.44272613525390625},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.39700043201446533},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.36092251539230347},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35669416189193726},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003059","descriptor_name":"Cocos","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020079","descriptor_name":"Terminal Repeat Sequences","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D032461","descriptor_name":"Chromosomes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1038/s41598-024-79768-3","doi":"https://doi.org/10.1038/s41598-024-79768-3","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1038/s41598-024-79768-3","pdf_url":"https://www.nature.com/articles/s41598-024-79768-3.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11579352","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11579352","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11579352/pdf/41598_2024_Article_79768.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sci Rep","raw_type":"Text"},{"id":"pmid:39567709","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39567709","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific reports","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:c5e8a6c197dc41618edd0ceeb3a36b68","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/c5e8a6c197dc41618edd0ceeb3a36b68","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scientific Reports, Vol 14, Iss 1, Pp 1-18 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41598-024-79768-3","doi":"https://doi.org/10.1038/s41598-024-79768-3","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1038/s41598-024-79768-3","pdf_url":"https://www.nature.com/articles/s41598-024-79768-3.pdf","source":{"id":"https://openalex.org/S196734849","display_name":"Scientific Reports","issn_l":"2045-2322","issn":["2045-2322"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Scientific Reports","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.6875}],"study_designs":[],"awards":[{"id":"https://openalex.org/G6974801104","display_name":null,"funder_award_id":"1000761030","funder_id":"https://openalex.org/F4320320769","funder_display_name":"Indian Council of Agricultural Research"}],"funders":[{"id":"https://openalex.org/F4320320769","display_name":"Indian Council of Agricultural Research","ror":"https://ror.org/04fw54a43"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404568232.pdf","grobid_xml":"https://content.openalex.org/works/W4404568232.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1482190741","https://openalex.org/W1835676614","https://openalex.org/W1936164116","https://openalex.org/W1983650084","https://openalex.org/W1996700726","https://openalex.org/W2020134788","https://openalex.org/W2043573189","https://openalex.org/W2099753867","https://openalex.org/W2101291993","https://openalex.org/W2104005232","https://openalex.org/W2116744776","https://openalex.org/W2130530163","https://openalex.org/W2134907628","https://openalex.org/W2138160528","https://openalex.org/W2138471074","https://openalex.org/W2141152740","https://openalex.org/W2155628349","https://openalex.org/W2170551349","https://openalex.org/W2173732482","https://openalex.org/W2429669380","https://openalex.org/W2509571864","https://openalex.org/W2518893409","https://openalex.org/W2751583588","https://openalex.org/W2762790199","https://openalex.org/W2766587276","https://openalex.org/W2770838780","https://openalex.org/W2772231999","https://openalex.org/W2788194819","https://openalex.org/W2799828084","https://openalex.org/W2903125175","https://openalex.org/W2951912016","https://openalex.org/W2956596417","https://openalex.org/W2964849163","https://openalex.org/W2994632914","https://openalex.org/W3005235420","https://openalex.org/W3011284854","https://openalex.org/W3017049640","https://openalex.org/W3025319533","https://openalex.org/W3043465911","https://openalex.org/W3080997834","https://openalex.org/W3085758516","https://openalex.org/W3102154835","https://openalex.org/W3123167646","https://openalex.org/W3195010157","https://openalex.org/W3199868626","https://openalex.org/W3201005411","https://openalex.org/W3208477652","https://openalex.org/W3210844414","https://openalex.org/W3215532808","https://openalex.org/W4226488170","https://openalex.org/W4252315570","https://openalex.org/W4280570035","https://openalex.org/W4283123496","https://openalex.org/W4286656625","https://openalex.org/W4311663808","https://openalex.org/W4311928790","https://openalex.org/W4319266028","https://openalex.org/W4380854650","https://openalex.org/W4394785938","https://openalex.org/W4394920224","https://openalex.org/W4401925246"],"related_works":["https://openalex.org/W2956596417","https://openalex.org/W3102154835","https://openalex.org/W7036852561","https://openalex.org/W3201652712","https://openalex.org/W6976968253","https://openalex.org/W1992840604","https://openalex.org/W3208477652","https://openalex.org/W7206666224","https://openalex.org/W2059026427","https://openalex.org/W6884988328"],"abstract_inverted_index":{"The":[0,95,195,215,230],"high-quality":[1],"genome":[2,18,50,66,97,181,201,239],"of":[3,51,59,64,102,134,143,177],"coconut":[4],"(Cocos":[5],"nucifera":[6,129],"L.)":[7],"is":[8,32],"a":[9,48,56,161,174],"crucial":[10],"resource":[11],"for":[12,249],"enhancing":[13],"agronomic":[14],"traits":[15],"and":[16,43,141,145,172,186,192,205,212,233,241,246],"studying":[17],"evolution":[19],"within":[20],"the":[21,26,35,65,82,89,111,127,155,207,234],"Arecaceae":[22],"family.":[23],"We":[24,158],"sequenced":[25],"Chowghat":[27],"Green":[28],"Dwarf":[29],"cultivar,":[30],"which":[31],"resistant":[33],"to":[34,46,70,170,203],"root":[36],"(wilt)":[37],"disease,":[38],"utilizing":[39],"Illumina,":[40],"PacBio,":[41],"ONT,":[42],"Hi-C":[44],"technologies":[45],"produce":[47],"chromosome-level":[49],"~":[52,93],"2.68":[53],"Gb":[54,100],"with":[55,105],"scaffold":[57],"N50":[58],"174":[60],"Mb;":[61],"approximately":[62],"97%":[63],"could":[67],"be":[68],"anchored":[69],"16":[71],"pseudo-molecules":[72],"(2.62":[73],"Gb).":[74],"In":[75,148],"total,":[76],"34,483":[77],"protein-coding":[78],"genes":[79],"were":[80,152],"annotated;":[81],"BUSCO":[83],"completeness":[84,91],"score":[85],"was":[86,92],"96.80%,":[87],"while":[88],"k-mer":[90],"87%.":[94],"assembled":[96],"includes":[98],"2.19":[99],"(81.64%)":[101],"repetitive":[103],"sequences,":[104,182],"long":[106],"terminal":[107],"repeats":[108],"(LTRs)":[109],"constituting":[110],"most":[112],"abundant":[113],"class":[114],"at":[115],"53.76%.":[116],"Additionally,":[117],"our":[118],"analysis":[119,133,240],"confirms":[120],"two":[121],"whole-genome":[122],"duplication":[123],"(WGD)":[124],"events":[125],"in":[126,154,253],"C.":[128],"lineage.":[130],"A":[131],"genome-wide":[132],"LTR":[135],"insertion":[136],"time":[137],"revealed":[138],"ancient":[139],"divergence":[140],"proliferation":[142],"copia":[144],"gypsy":[146],"elements.":[147],"addition,":[149],"1368":[150],"RGAs":[151],"discovered":[153],"CGD":[156],"genome.":[157],"also":[159],"developed":[160],"web":[162,196],"server":[163,197,218],"'Kalpa":[164],"Genome":[165],"Resource'":[166],"(":[167],"http://210.89.54.198:3000/":[168],"),":[169],"manage":[171],"store":[173],"comprehensive":[175],"array":[176],"genomic":[178,231],"data,":[179],"including":[180],"genetic":[183,251],"markers,":[184],"structural":[185],"functional":[187],"annotations":[188],"like":[189],"metabolic":[190],"pathways,":[191],"transcriptomic":[193],"profiles.":[194],"has":[198],"an":[199],"embedded":[200],"browser":[202],"analyze":[204],"visualize":[206],"genome,":[208,224],"its":[209],"genomics":[210],"elements,":[211],"transcriptome":[213,226],"data.":[214],"in-built":[216],"BLAST":[217],"allows":[219],"sequence":[220],"homology":[221],"searches":[222],"against":[223],"annotated":[225],"&":[227],"proteome":[228],"sequences.":[229],"dataset":[232],"database":[235],"will":[236],"support":[237],"comparative":[238],"can":[242],"expedite":[243],"genome-driven":[244],"breeding":[245],"enhancement":[247],"efforts":[248],"tapping":[250],"gains":[252],"coconut.":[254]},"counts_by_year":[{"year":2026,"cited_by_count":5}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2024-11-21T00:00:00"}
