{"id":"https://openalex.org/W4404469901","doi":"https://doi.org/10.1038/s41467-024-54427-3","title":"Genome evolution and diversity of wild and cultivated rice species","display_name":"Genome evolution and diversity of wild and cultivated rice species","publication_year":2024,"publication_date":"2024-11-18","ids":{"openalex":"https://openalex.org/W4404469901","doi":"https://doi.org/10.1038/s41467-024-54427-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/39557856","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/11574199"},"language":"en","primary_location":{"id":"doi:10.1038/s41467-024-54427-3","doi":"https://doi.org/10.1038/s41467-024-54427-3","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-024-54427-3","pdf_url":"https://www.nature.com/articles/s41467-024-54427-3.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41467-024-54427-3.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048043919","display_name":"Weixiong Long","orcid":"https://orcid.org/0000-0002-5822-6454","observed_orcids":["https://orcid.org/0000-0002-5822-6454"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Weixiong Long","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China. longweixiong1219@163.com","Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":"https://orcid.org/0000-0002-5822-6454","affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China. longweixiong1219@163.com","institution_ids":["https://openalex.org/I4210165555"]},{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101653378","display_name":"Qiang He","orcid":"https://orcid.org/0000-0002-6466-8339","observed_orcids":["https://orcid.org/0000-0002-6466-8339"]},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiang He","raw_affiliation_strings":["School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China"],"raw_orcid":"https://orcid.org/0000-0002-6466-8339","affiliations":[{"raw_affiliation_string":"School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yitao Wang","orcid":"https://orcid.org/0009-0002-8744-3164","observed_orcids":["https://orcid.org/0009-0002-8744-3164"]},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yitao Wang","raw_affiliation_strings":["School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China"],"raw_orcid":"https://orcid.org/0009-0002-8744-3164","affiliations":[{"raw_affiliation_string":"School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115694977","display_name":"Yu Wang","orcid":"https://orcid.org/0000-0002-8159-8723","observed_orcids":["https://orcid.org/0000-0002-8159-8723","https://orcid.org/0009-0005-2719-759X","https://orcid.org/0000-0002-4116-0364","https://orcid.org/0000-0002-6296-6965"]},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Wang","raw_affiliation_strings":["School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100439992","display_name":"Jie Wang","orcid":"https://orcid.org/0000-0001-6096-1231","observed_orcids":["https://orcid.org/0000-0001-6096-1231"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Wang","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":"https://orcid.org/0000-0001-6096-1231","affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047890039","display_name":"Zhengqing Yuan","orcid":"https://orcid.org/0000-0002-6945-0427","observed_orcids":["https://orcid.org/0000-0002-6945-0427"]},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengqing Yuan","raw_affiliation_strings":["College of Life Sciences, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0002-6945-0427","affiliations":[{"raw_affiliation_string":"College of Life Sciences, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076970980","display_name":"Meijia Wang","orcid":"https://orcid.org/0009-0006-9647-8552","observed_orcids":["https://orcid.org/0009-0006-9647-8552"]},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Meijia Wang","raw_affiliation_strings":["School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China"],"raw_orcid":"https://orcid.org/0009-0006-9647-8552","affiliations":[{"raw_affiliation_string":"School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wei Chen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Chen","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111400106","display_name":"Lihua Luo","orcid":"https://orcid.org/0009-0001-5003-7640","observed_orcids":["https://orcid.org/0009-0001-5003-7640"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lihua Luo","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":"https://orcid.org/0009-0001-5003-7640","affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009747724","display_name":"Laiyang Luo","orcid":"https://orcid.org/0009-0001-2854-8647","observed_orcids":["https://orcid.org/0009-0001-2854-8647"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Laiyang Luo","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":"https://orcid.org/0009-0001-2854-8647","affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027289937","display_name":"Weibiao Xu","orcid":"https://orcid.org/0009-0001-7619-3772","observed_orcids":["https://orcid.org/0009-0001-7619-3772"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weibiao Xu","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":"https://orcid.org/0009-0001-7619-3772","affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yonghui Li","orcid":"https://orcid.org/0009-0001-9148-1262","observed_orcids":["https://orcid.org/0009-0001-9148-1262"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yonghui Li","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":"https://orcid.org/0009-0001-9148-1262","affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112964451","display_name":"Wei Li","orcid":"https://orcid.org/0000-0002-6726-329X","observed_orcids":["https://orcid.org/0000-0002-6726-329X"]},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China"],"raw_orcid":"https://orcid.org/0000-0002-6726-329X","affiliations":[{"raw_affiliation_string":"School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Longan Yan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Longan Yan","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102746724","display_name":"Yaohui Cai","orcid":"https://orcid.org/0000-0003-4539-5803","observed_orcids":["https://orcid.org/0000-0003-4539-5803"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yaohui Cai","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China. caiyaohui@126.com","Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China. caiyaohui@126.com","institution_ids":["https://openalex.org/I4210165555"]},{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013154420","display_name":"Huilong Du","orcid":"https://orcid.org/0000-0001-7755-6611","observed_orcids":["https://orcid.org/0000-0001-7755-6611"]},"institutions":[{"id":"https://openalex.org/I43337087","display_name":"Hebei University","ror":"https://ror.org/01p884a79","country_code":"CN","type":"education","lineage":["https://openalex.org/I43337087"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huilong Du","raw_affiliation_strings":["School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China. huilongdu@hbu.edu.cn","School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China"],"raw_orcid":"https://orcid.org/0000-0001-7755-6611","affiliations":[{"raw_affiliation_string":"School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China. huilongdu@hbu.edu.cn","institution_ids":["https://openalex.org/I43337087"]},{"raw_affiliation_string":"School of Life Sciences, Institute of Life Sciences and Green Development, Hebei Basic Science Center for Biotic Interaction, Hebei University, Baoding, China","institution_ids":["https://openalex.org/I43337087"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056361410","display_name":"Hongwei Xie","orcid":"https://orcid.org/0009-0003-2157-8346","observed_orcids":["https://orcid.org/0009-0003-2157-8346"]},"institutions":[{"id":"https://openalex.org/I4210165555","display_name":"Jiangxi Academy of Agricultural Sciences","ror":"https://ror.org/05ndx7902","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210165555"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Hongwei Xie","raw_affiliation_strings":["Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China. xhw206@jxaas.cn","Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China"],"raw_orcid":"https://orcid.org/0009-0003-2157-8346","affiliations":[{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China. xhw206@jxaas.cn","institution_ids":["https://openalex.org/I4210165555"]},{"raw_affiliation_string":"Jiangxi Super -rice Research and Development Center, Jiangxi Provincial Key Laboratory of Rice Germplasm Innovation and Breeding, National Engineering Research Center for Rice, Jiangxi Academy of Agricultural Sciences, Nanchang, China","institution_ids":["https://openalex.org/I4210165555"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5013154420","https://openalex.org/A5048043919","https://openalex.org/A5056361410","https://openalex.org/A5102746724"],"corresponding_institution_ids":["https://openalex.org/I4210165555","https://openalex.org/I43337087"],"apc_list":{"value":6790,"currency":"USD","value_usd":6790},"apc_paid":{"value":6790,"currency":"USD","value_usd":6790},"fwci":12.139,"has_fulltext":true,"cited_by_count":58,"citation_normalized_percentile":{"value":0.99411474,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"15","issue":"1","first_page":"9994","last_page":"9994"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.053700000047683716,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.0008999999845400453,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/wild-rice","display_name":"wild rice","score":0.906000018119812},{"id":"https://openalex.org/keywords/oryza","display_name":"Oryza","score":0.9509999752044678},{"id":"https://openalex.org/keywords/genome-evolution","display_name":"genome evolution","score":0.8299999833106995},{"id":"https://openalex.org/keywords/genomic-diversity","display_name":"genomic diversity","score":0.5139999985694885},{"id":"https://openalex.org/keywords/chromosome-scale-genome","display_name":"chromosome-scale genome","score":0.7760000228881836},{"id":"https://openalex.org/keywords/gene-family","display_name":"gene family","score":0.781000018119812},{"id":"https://openalex.org/keywords/genome-size-variation","display_name":"genome size variation","score":0.8130000233650208},{"id":"https://openalex.org/keywords/centromere-evolution","display_name":"centromere evolution","score":0.9990000128746033},{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":0.9919999837875366},{"id":"https://openalex.org/keywords/structural-reorganization","display_name":"structural rearrangement","score":0.8980000019073486},{"id":"https://openalex.org/keywords/allelic-variation","display_name":"allelic variation","score":0.9319999814033508},{"id":"https://openalex.org/keywords/chromosomal-inversions","display_name":"chromosomal inversions","score":0.828000009059906},{"id":"https://openalex.org/keywords/oryza-rufipogon","display_name":"Oryza rufipogon","score":0.9760000109672546},{"id":"https://openalex.org/keywords/japonica-rice","display_name":"Oryza sativa subsp. japonica","score":0.9679999947547913},{"id":"https://openalex.org/keywords/disease-resistance-genes","display_name":"disease resistance genes","score":0.9810000061988831},{"id":"https://openalex.org/keywords/domestication","display_name":"domestication","score":0.7490000128746033},{"id":"https://openalex.org/keywords/selective-breeding","display_name":"selective breeding","score":0.7039999961853027}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8356955051422119},{"id":"https://openalex.org/C134387633","wikidata":"https://www.wikidata.org/wiki/Q11395","display_name":"Domestication","level":2,"score":0.8244808316230774},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7900159955024719},{"id":"https://openalex.org/C2777923347","wikidata":"https://www.wikidata.org/wiki/Q690633","display_name":"Oryza","level":4,"score":0.7080944776535034},{"id":"https://openalex.org/C2777461220","wikidata":"https://www.wikidata.org/wiki/Q589029","display_name":"Germplasm","level":2,"score":0.6633056998252869},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.556488573551178},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.5033404231071472},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44294145703315735},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3715583086013794},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.24085566401481628}],"mesh":[{"descriptor_ui":"D000069600","descriptor_name":"Plant Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071278","descriptor_name":"Domestication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012275","descriptor_name":"Oryza","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017343","descriptor_name":"Genes, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018556","descriptor_name":"Crops, Agricultural","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060467","descriptor_name":"Disease Resistance","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1038/s41467-024-54427-3","doi":"https://doi.org/10.1038/s41467-024-54427-3","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-024-54427-3","pdf_url":"https://www.nature.com/articles/s41467-024-54427-3.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},{"id":"doi:10.21203/rs.3.rs-4350570/v1","doi":"https://doi.org/10.21203/rs.3.rs-4350570/v1","is_oa":true,"landing_page_url":"http://dx.doi.org/10.21203/rs.3.rs-4350570/v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:11574199","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11574199","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11574199/pdf/41467_2024_Article_54427.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nat Commun","raw_type":"Text"},{"id":"pmid:39557856","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39557856","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature communications","raw_type":"Journal Article"},{"id":"pmh:oai:RePEc:nat:natcom:v:15:y:2024:i:1:d:10.1038_s41467-024-54427-3","doi":null,"is_oa":false,"landing_page_url":"https://www.nature.com/articles/s41467-024-54427-3","pdf_url":null,"source":{"id":"https://openalex.org/S4306401271","display_name":"RePEc: Research Papers in Economics","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I77793887","host_organization_name":"Federal Reserve Bank of St. Louis","host_organization_lineage":["https://openalex.org/I77793887"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"},{"id":"pmh:oai:doaj.org/article:a9e40f40f4294694a5577da44401cc2f","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/a9e40f40f4294694a5577da44401cc2f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41467-024-54427-3","doi":"https://doi.org/10.1038/s41467-024-54427-3","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-024-54427-3","pdf_url":"https://www.nature.com/articles/s41467-024-54427-3.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.875,"display_name":"Zero hunger"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G3157369120","display_name":null,"funder_award_id":"CARS-01","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3951052279","display_name":null,"funder_award_id":"2023YFD1201203","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G4060055762","display_name":null,"funder_award_id":"CARS-01-08","funder_id":"https://openalex.org/F4320335447","funder_display_name":"Earmarked Fund for China Agriculture Research System"},{"id":"https://openalex.org/G5243303699","display_name":null,"funder_award_id":"CARS-01","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G6596129097","display_name":"D1\u578b\u6c34\u7a3b\u7ec6\u80de\u8d28\u96c4\u6027\u4e0d\u80b2\u6062\u590d\u57fa\u56e0\u5728\u4e2d\u56fd\u666e\u901a\u91ce\u751f\u7a3b\u7684\u5206\u5e03\u53ca\u514b\u9686\u7814\u7a76","funder_award_id":"31960400","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335447","display_name":"Earmarked Fund for China Agriculture Research System","ror":null},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":"https://ror.org/003x0zc53"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404469901.pdf","grobid_xml":"https://content.openalex.org/works/W4404469901.grobid-xml"},"referenced_works_count":99,"referenced_works":["https://openalex.org/W118013854","https://openalex.org/W1008648349","https://openalex.org/W1498842974","https://openalex.org/W1525734744","https://openalex.org/W1597884192","https://openalex.org/W1779017450","https://openalex.org/W1889423108","https://openalex.org/W1978885894","https://openalex.org/W1987423713","https://openalex.org/W1996700726","https://openalex.org/W2018107910","https://openalex.org/W2020134788","https://openalex.org/W2027446674","https://openalex.org/W2040532839","https://openalex.org/W2054254276","https://openalex.org/W2055494779","https://openalex.org/W2063849323","https://openalex.org/W2063944697","https://openalex.org/W2065573490","https://openalex.org/W2082330286","https://openalex.org/W2082819719","https://openalex.org/W2094335760","https://openalex.org/W2101291993","https://openalex.org/W2101844654","https://openalex.org/W2102278945","https://openalex.org/W2103441770","https://openalex.org/W2106883107","https://openalex.org/W2108108770","https://openalex.org/W2108234281","https://openalex.org/W2108303454","https://openalex.org/W2112814753","https://openalex.org/W2116744776","https://openalex.org/W2118970626","https://openalex.org/W2121840477","https://openalex.org/W2128732583","https://openalex.org/W2129769642","https://openalex.org/W2132926880","https://openalex.org/W2138098955","https://openalex.org/W2139134537","https://openalex.org/W2141165178","https://openalex.org/W2141458291","https://openalex.org/W2142678478","https://openalex.org/W2155628349","https://openalex.org/W2156611167","https://openalex.org/W2158804744","https://openalex.org/W2159038577","https://openalex.org/W2184109305","https://openalex.org/W2263875137","https://openalex.org/W2396077153","https://openalex.org/W2462305122","https://openalex.org/W2481029670","https://openalex.org/W2510875395","https://openalex.org/W2548365387","https://openalex.org/W2583789204","https://openalex.org/W2611605679","https://openalex.org/W2772231999","https://openalex.org/W2782908004","https://openalex.org/W2782974471","https://openalex.org/W2784788330","https://openalex.org/W2789843538","https://openalex.org/W2799524357","https://openalex.org/W2800434159","https://openalex.org/W2807452401","https://openalex.org/W2808960906","https://openalex.org/W2885582175","https://openalex.org/W2943405615","https://openalex.org/W2949867654","https://openalex.org/W2970239197","https://openalex.org/W2988396470","https://openalex.org/W2990677539","https://openalex.org/W2994888090","https://openalex.org/W3004800862","https://openalex.org/W3022991017","https://openalex.org/W3034751020","https://openalex.org/W3042732083","https://openalex.org/W3046861499","https://openalex.org/W3047598142","https://openalex.org/W3085758516","https://openalex.org/W3110323992","https://openalex.org/W3126657350","https://openalex.org/W3158604843","https://openalex.org/W3165551447","https://openalex.org/W3174957256","https://openalex.org/W3175752499","https://openalex.org/W3181465891","https://openalex.org/W4212957584","https://openalex.org/W4223446368","https://openalex.org/W4226060525","https://openalex.org/W4232644640","https://openalex.org/W4285093403","https://openalex.org/W4285727773","https://openalex.org/W4286750269","https://openalex.org/W4286833816","https://openalex.org/W4301594850","https://openalex.org/W4353018908","https://openalex.org/W4362661900","https://openalex.org/W4378745803","https://openalex.org/W4384436066","https://openalex.org/W4387642549"],"related_works":["https://openalex.org/W4406685471","https://openalex.org/W100121266","https://openalex.org/W2531075729","https://openalex.org/W2782974471","https://openalex.org/W7131291569","https://openalex.org/W4388881077","https://openalex.org/W2324825491","https://openalex.org/W4404160972","https://openalex.org/W2038987736","https://openalex.org/W4409485887"],"abstract_inverted_index":{"Abstract":[0],"Rice":[1],"(Oryza":[2],"sativa":[3,163],"L.)":[4],"is":[5,45,166],"a":[6,77,170,182],"vital":[7],"staple":[8],"food":[9],"globally,":[10],"but":[11,185,235],"its":[12],"genetic":[13,231],"diversity":[14,27,187],"has":[15],"decreased":[16],"due":[17,198],"to":[18,169,175,199,230],"extensive":[19,208],"breeding.":[20],"However,":[21],"research":[22],"on":[23],"genome":[24,43,116],"evolution":[25,242],"and":[26,41,121,124,137,141,161,207,217,233,243],"of":[28,58,79,178,203,210,240],"wild":[29,61,148],"rice":[30,51,62,102,241],"species,":[31],"particularly":[32],"those":[33],"with":[34,72],"BB,":[35],"CC,":[36],"BBCC,":[37],"CCDD,":[38],"EE,":[39],"FF,":[40],"GG":[42],"types,":[44],"limited,":[46],"impeding":[47],"their":[48],"potential":[49,113],"in":[50,100,147,158,188,192],"breeding1,2.":[52],"This":[53,220],"study":[54,222],"presents":[55],"chromosome-scale":[56],"genomes":[57,71,111,194],"thirteen":[59],"representatives":[60],"species":[63,103],"from":[64],"the":[65,86,176,200],"Oryza":[66,110,159,162],"genus.":[67],"By":[68],"integrating":[69],"these":[70],"four":[73],"previously":[74,226],"published":[75],"ones,":[76],"total":[78],"101,723":[80],"gene":[81,92,97,122],"families":[82,98],"were":[83,104,145],"identified":[84],"across":[85],"genus,":[87],"including":[88],"9,834":[89],"(9.67%)":[90],"core":[91],"families.":[93],"Additionally,":[94],"63,881":[95],"new":[96],"absent":[99],"cultivated":[101,193],"discovered.":[105],"Comparative":[106],"genomic":[107],"analysis":[108],"among":[109],"reveals":[112],"mechanisms":[114],"underlying":[115],"size":[117],"variation,":[118],"centromere":[119],"evolution,":[120],"number":[123],"expression":[125],"influenced":[126],"by":[127],"transposable":[128],"elements.":[129],"Extensive":[130],"structural":[131],"rearrangements,":[132],"large":[133],"scale":[134],"sub-genomes":[135],"exchanges,":[136],"widespread":[138],"allelic":[139],"variations":[140,144],"regulatory":[142],"sequence":[143],"discovered":[146],"rice.":[149],"We":[150],"noticed":[151],"an":[152],"inversion":[153],"that":[154,172],"are":[155],"pervasive":[156],"occurred":[157],"rufipogon":[160],"japonica,":[164],"which":[165],"tightly":[167],"linked":[168],"locus":[171],"might":[173],"contributed":[174],"expansion":[177,184],"geographical":[179],"range.":[180],"Interestingly,":[181],"notable":[183],"less":[186],"disease":[189],"resistance":[190],"genes":[191,206],"was":[195],"observed,":[196],"likely":[197],"random":[201],"loss":[202],"some":[204],"R":[205],"amplification":[209],"others":[211],"for":[212],"specific":[213],"diseases":[214],"during":[215],"domestication":[216],"artificial":[218],"selection.":[219],"comprehensive":[221],"not":[223],"only":[224],"provide":[225],"hidden":[227],"legacy":[228],"accessible":[229],"studies":[232],"breeding":[234],"also":[236],"deepens":[237],"our":[238],"understanding":[239],"biology.":[244]},"counts_by_year":[{"year":2026,"cited_by_count":31},{"year":2025,"cited_by_count":27}],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2024-11-18T00:00:00"}
