{"id":"https://openalex.org/W4403894741","doi":"https://doi.org/10.3390/ijms252111671","title":"Integrated Transcriptomic and Proteomic Analysis of Nutritional Quality-Related Molecular Mechanisms in \u201cLongjia\u201d, \u201cYangpao\u201d, and \u201cNiangqing\u201d Walnuts (Juglans sigillata)","display_name":"Integrated Transcriptomic and Proteomic Analysis of Nutritional Quality-Related Molecular Mechanisms in \u201cLongjia\u201d, \u201cYangpao\u201d, and \u201cNiangqing\u201d Walnuts (Juglans sigillata)","publication_year":2024,"publication_date":"2024-10-30","ids":{"openalex":"https://openalex.org/W4403894741","doi":"https://doi.org/10.3390/ijms252111671","pmid":"https://pubmed.ncbi.nlm.nih.gov/39519221","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/11546566"},"language":"en","primary_location":{"id":"doi:10.3390/ijms252111671","doi":"https://doi.org/10.3390/ijms252111671","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ijms252111671","pdf_url":null,"source":{"id":"https://openalex.org/S10623703","display_name":"International Journal of Molecular Sciences","issn_l":"1422-0067","issn":["1422-0067","1661-6596"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","medline","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Molecular Sciences","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3390/ijms252111671","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008029821","display_name":"Hailang Wang","orcid":"https://orcid.org/0009-0007-1481-2295","observed_orcids":["https://orcid.org/0009-0007-1481-2295"]},"institutions":[{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hailang Wang","raw_affiliation_strings":["Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China","institution_ids":["https://openalex.org/I25399270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083909787","display_name":"Yue Su","orcid":"https://orcid.org/0000-0003-1456-749X","observed_orcids":["https://orcid.org/0000-0003-1456-749X"]},"institutions":[{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue Su","raw_affiliation_strings":["Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China","institution_ids":["https://openalex.org/I25399270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018874139","display_name":"Xiang Hu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang Hu","raw_affiliation_strings":["Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China","institution_ids":["https://openalex.org/I25399270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101365362","display_name":"Boxiao Wu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Boxiao Wu","raw_affiliation_strings":["Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China","institution_ids":["https://openalex.org/I25399270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008799889","display_name":"Yun Liu","orcid":"https://orcid.org/0000-0002-8947-3482","observed_orcids":["https://orcid.org/0000-0002-8947-3482","https://orcid.org/0009-0007-1688-8859"]},"institutions":[{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yun Liu","raw_affiliation_strings":["Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China"],"raw_orcid":"https://orcid.org/0000-0002-8947-3482","affiliations":[{"raw_affiliation_string":"Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China","institution_ids":["https://openalex.org/I25399270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018555432","display_name":"Huan Kan","orcid":"https://orcid.org/0000-0003-3938-4366","observed_orcids":["https://orcid.org/0000-0003-3938-4366"]},"institutions":[{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huan Kan","raw_affiliation_strings":["Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China","institution_ids":["https://openalex.org/I25399270"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090396366","display_name":"Changwei Cao","orcid":"https://orcid.org/0000-0003-3486-7406","observed_orcids":["https://orcid.org/0000-0003-3486-7406"]},"institutions":[{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Changwei Cao","raw_affiliation_strings":["Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Engineering, College of Biological and Food Engineering, Southwest Forestry University, Kunming 650224, China","institution_ids":["https://openalex.org/I25399270"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5018555432","https://openalex.org/A5090396366"],"corresponding_institution_ids":["https://openalex.org/I25399270"],"apc_list":{"value":2900,"currency":"CHF","value_usd":3296},"apc_paid":{"value":2900,"currency":"CHF","value_usd":3296},"fwci":0.4559,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.55775015,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":95},"biblio":{"volume":"25","issue":"21","first_page":"11671","last_page":"11671"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12314","display_name":"Nuts composition and effects","score":0.8125,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12314","display_name":"Nuts composition and effects","score":0.8125,"subfield":{"id":"https://openalex.org/subfields/2916","display_name":"Nutrition and Dietetics"},"field":{"id":"https://openalex.org/fields/29","display_name":"Nursing"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.027899999171495438,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11247","display_name":"Plant nutrient uptake and metabolism","score":0.020500000566244125,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/juglans-sigillata","display_name":"Juglans sigillata","score":0.9490000009536743},{"id":"https://openalex.org/keywords/fatty-acid-synthesis","display_name":"fatty acid synthesis","score":0.9679999947547913},{"id":"https://openalex.org/keywords/amino-acid-metabolism","display_name":"amino acid metabolism","score":1.0},{"id":"https://openalex.org/keywords/walnut-breeding","display_name":"walnut breeding","score":0.550000011920929}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.5296290516853333},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.494643896818161},{"id":"https://openalex.org/C2779218259","wikidata":"https://www.wikidata.org/wiki/Q2453469","display_name":"Juglans","level":2,"score":0.4838956296443939},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4289247393608093},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.41302207112312317},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.3216809630393982},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.18825051188468933},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1316138505935669},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11132645606994629},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D009753","descriptor_name":"Nutritive Value","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010940","descriptor_name":"Plant Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018506","descriptor_name":"Gene Expression Regulation, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D031324","descriptor_name":"Juglans","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D031324","descriptor_name":"Juglans","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D040901","descriptor_name":"Proteomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.3390/ijms252111671","doi":"https://doi.org/10.3390/ijms252111671","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ijms252111671","pdf_url":null,"source":{"id":"https://openalex.org/S10623703","display_name":"International Journal of Molecular Sciences","issn_l":"1422-0067","issn":["1422-0067","1661-6596"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","medline","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Molecular Sciences","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11546566","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11546566","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11546566/pdf/","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Int J Mol Sci","raw_type":"Text"},{"id":"pmid:39519221","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39519221","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International journal of molecular sciences","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.3390/ijms252111671","doi":"https://doi.org/10.3390/ijms252111671","is_oa":true,"landing_page_url":"https://doi.org/10.3390/ijms252111671","pdf_url":null,"source":{"id":"https://openalex.org/S10623703","display_name":"International Journal of Molecular Sciences","issn_l":"1422-0067","issn":["1422-0067","1661-6596"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","medline","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Molecular Sciences","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.991100013256073}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403894741.pdf","grobid_xml":"https://content.openalex.org/works/W4403894741.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1563103142","https://openalex.org/W1968255354","https://openalex.org/W1968598018","https://openalex.org/W2008419518","https://openalex.org/W2036849448","https://openalex.org/W2038346781","https://openalex.org/W2041660879","https://openalex.org/W2044401593","https://openalex.org/W2046182549","https://openalex.org/W2074800523","https://openalex.org/W2083851878","https://openalex.org/W2179977559","https://openalex.org/W2563987430","https://openalex.org/W2625635215","https://openalex.org/W2737267472","https://openalex.org/W2767720146","https://openalex.org/W2789937128","https://openalex.org/W2790213582","https://openalex.org/W2883800059","https://openalex.org/W2905169106","https://openalex.org/W2952604101","https://openalex.org/W2991166274","https://openalex.org/W3008684237","https://openalex.org/W3028812955","https://openalex.org/W3091851601","https://openalex.org/W3118931967","https://openalex.org/W3128412047","https://openalex.org/W3157056504","https://openalex.org/W3184151029","https://openalex.org/W3201250117","https://openalex.org/W4220877285","https://openalex.org/W4220929508","https://openalex.org/W4223543013","https://openalex.org/W4294739492","https://openalex.org/W4295359178","https://openalex.org/W4308834498","https://openalex.org/W4311505401","https://openalex.org/W4321087950","https://openalex.org/W4322771945","https://openalex.org/W4366429761","https://openalex.org/W4366826026","https://openalex.org/W4382931781","https://openalex.org/W4385880487","https://openalex.org/W4386391431","https://openalex.org/W4387082204","https://openalex.org/W4393930434","https://openalex.org/W4398224628","https://openalex.org/W6739259423"],"related_works":["https://openalex.org/W3108642794","https://openalex.org/W2902035022","https://openalex.org/W2213633067","https://openalex.org/W4385880487","https://openalex.org/W4281892186","https://openalex.org/W4404124401","https://openalex.org/W4411310572","https://openalex.org/W4411113117","https://openalex.org/W4309848423","https://openalex.org/W2387135623"],"abstract_inverted_index":{"In":[0],"this":[1],"study,":[2],"\"Longjia":[3],"(LJ)\"":[4],"and":[5,22,27,32,57,71,78,96,115,121,128,141,152,155],"\"Yangpao":[6],"(YP)\"exhibited":[7],"higher":[8],"contents":[9],"of":[10,20,47,54,107,135,146,149,157],"major":[11],"nutrients":[12],"compared":[13],"to":[14,143],"\"Niangqing":[15],"(NQ)\"":[16],"walnuts.":[17],"The":[18],"combination":[19],"transcriptome":[21,70],"proteome":[23,72],"by":[24],"RNA":[25],"sequencing":[26],"isotope":[28],"labeling":[29],"for":[30],"relative":[31],"absolute":[33],"quantification":[34],"techniques":[35],"provides":[36],"new":[37],"insights":[38],"into":[39],"the":[40,44,48,65,104,132,144,147,153],"molecular":[41,133],"mechanisms":[42,134,148],"underlying":[43],"nutritional":[45,105],"quality":[46,106],"three":[49,66],"walnut":[50,108,124,139,159],"species.":[51],"A":[52],"total":[53],"4146":[55],"genes":[56,77,114],"139":[58],"proteins":[59,79,116],"showed":[60],"differential":[61],"expression":[62],"levels":[63],"in":[64,83,93,123,138],"comparison":[67],"groups.":[68],"Combined":[69],"analyses":[73],"revealed":[74],"that":[75],"these":[76],"were":[80],"mainly":[81],"enriched":[82],"signaling":[84],"pathways":[85],"such":[86],"as":[87],"fatty":[88],"acid":[89,98],"biosynthesis,":[90],"protein":[91],"processing":[92],"endoplasmic":[94],"reticulum,":[95],"amino":[97],"metabolism,":[99],"revealing":[100],"their":[101],"relationship":[102],"with":[103,118],"kernels.":[109],"This":[110],"study":[111],"identified":[112],"key":[113],"associated":[117],"nutrient":[119,136,150],"metabolism":[120],"accumulation":[122],"kernels,":[125,140],"provided":[126],"transcriptomic":[127],"proteomic":[129],"information":[130],"on":[131],"differences":[137,151],"contributed":[142],"elucidation":[145],"selection":[154],"breeding":[156],"high-quality":[158],"seedlings.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2024-10-31T00:00:00"}
