{"id":"https://openalex.org/W4403221963","doi":"https://doi.org/10.1071/cp24160","title":"Understanding the genetic landscape of flowering time variation in Brassica juncea (L.) Czern. and its diploid progenitors: unravelling the role of selection and cytoplasmic backgrounds","display_name":"Understanding the genetic landscape of flowering time variation in Brassica juncea (L.) Czern. and its diploid progenitors: unravelling the role of selection and cytoplasmic backgrounds","publication_year":2024,"publication_date":"2024-10-07","ids":{"openalex":"https://openalex.org/W4403221963","doi":"https://doi.org/10.1071/cp24160"},"language":"en","primary_location":{"id":"doi:10.1071/cp24160","doi":"https://doi.org/10.1071/cp24160","is_oa":false,"landing_page_url":"https://doi.org/10.1071/cp24160","pdf_url":null,"source":{"id":"https://openalex.org/S4210234630","display_name":"Australian Journal of Agricultural Research","issn_l":"0004-9409","issn":["0004-9409","1444-9838","1836-0947","1836-5795"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","norway-1","poland-70","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320302","host_organization_name":"CSIRO Publishing","host_organization_lineage":["https://openalex.org/P4310320302"],"host_organization_lineage_names":["CSIRO Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Crop & Pasture Science","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Simarjeet K. Sra","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I899646","display_name":"Punjab Agricultural University","ror":"https://ror.org/02qbzdk74","country_code":"IN","type":"education","lineage":["https://openalex.org/I899646"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Simarjeet K. Sra","raw_affiliation_strings":["ASchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab 141004, India",", , , "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ASchool of Agricultural Biotechnology, Punjab Agricultural University, Ludhiana, Punjab 141004, India","institution_ids":["https://openalex.org/I899646"]},{"raw_affiliation_string":", , , ","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012201772","display_name":"Javed Akhatar","orcid":"https://orcid.org/0000-0001-5762-1375","observed_orcids":["https://orcid.org/0000-0001-5762-1375"]},"institutions":[{"id":"https://openalex.org/I899646","display_name":"Punjab Agricultural University","ror":"https://ror.org/02qbzdk74","country_code":"IN","type":"education","lineage":["https://openalex.org/I899646"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Javed Akhatar","raw_affiliation_strings":["BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India",", , , "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India","institution_ids":["https://openalex.org/I899646"]},{"raw_affiliation_string":", , , ","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113423209","display_name":"Snehdeep Kaur","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I899646","display_name":"Punjab Agricultural University","ror":"https://ror.org/02qbzdk74","country_code":"IN","type":"education","lineage":["https://openalex.org/I899646"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Snehdeep Kaur","raw_affiliation_strings":["BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India",", , , "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India","institution_ids":["https://openalex.org/I899646"]},{"raw_affiliation_string":", , , ","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032350322","display_name":"Chhaya Atri","orcid":"https://orcid.org/0000-0001-7187-7131","observed_orcids":["https://orcid.org/0000-0001-7187-7131"]},"institutions":[{"id":"https://openalex.org/I899646","display_name":"Punjab Agricultural University","ror":"https://ror.org/02qbzdk74","country_code":"IN","type":"education","lineage":["https://openalex.org/I899646"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Chhaya Atri","raw_affiliation_strings":["BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India",", , , "],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India","institution_ids":["https://openalex.org/I899646"]},{"raw_affiliation_string":", , , ","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045585189","display_name":"S. S. Banga","orcid":"https://orcid.org/0000-0001-8209-7341","observed_orcids":["https://orcid.org/0000-0001-8209-7341"]},"institutions":[{"id":"https://openalex.org/I899646","display_name":"Punjab Agricultural University","ror":"https://ror.org/02qbzdk74","country_code":"IN","type":"education","lineage":["https://openalex.org/I899646"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Surinder S. Banga","raw_affiliation_strings":["BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India",", , , "],"raw_orcid":"https://orcid.org/0000-0001-8209-7341","affiliations":[{"raw_affiliation_string":"BDepartment of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, Punjab 141004, India","institution_ids":["https://openalex.org/I899646"]},{"raw_affiliation_string":", , , ","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5045585189"],"corresponding_institution_ids":["https://openalex.org/I899646"],"apc_list":null,"apc_paid":null,"fwci":0.2409,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.52785173,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":96},"biblio":{"volume":"75","issue":"10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.7910000085830688,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.7910000085830688,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.14270000159740448,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.020400000736117363,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/brassica-juncea","display_name":"Brassica juncea","score":0.9309999942779541},{"id":"https://openalex.org/keywords/brassica-rapa","display_name":"Brassica rapa","score":0.8539999723434448},{"id":"https://openalex.org/keywords/flowering-time","display_name":"flowering time","score":0.984000027179718},{"id":"https://openalex.org/keywords/vernalization","display_name":"vernalization","score":0.8360000252723694},{"id":"https://openalex.org/keywords/directional-selection","display_name":"directional selection","score":0.6679999828338623},{"id":"https://openalex.org/keywords/gene-expression-variation","display_name":"gene expression variation","score":0.7490000128746033},{"id":"https://openalex.org/keywords/subgenomes","display_name":"subgenomes","score":0.6200000047683716},{"id":"https://openalex.org/keywords/allopolyploidy","display_name":"allopolyploidy","score":0.8169999718666077},{"id":"https://openalex.org/keywords/candidate-genes","display_name":"candidate genes","score":0.5230000019073486},{"id":"https://openalex.org/keywords/flc","display_name":"FLC","score":0.6579999923706055},{"id":"https://openalex.org/keywords/ft","display_name":"FT","score":0.44699999690055847},{"id":"https://openalex.org/keywords/terminal-flower-1","display_name":"TFL1","score":0.6150000095367432},{"id":"https://openalex.org/keywords/cytoplasmic-inheritance","display_name":"cytoplasmic inheritance","score":0.6119999885559082},{"id":"https://openalex.org/keywords/adaptive-evolution","display_name":"adaptive evolution","score":0.5080000162124634},{"id":"https://openalex.org/keywords/germplasm","display_name":"germplasm","score":0.6029999852180481}],"concepts":[{"id":"https://openalex.org/C2776747608","wikidata":"https://www.wikidata.org/wiki/Q58677","display_name":"Brassica","level":2,"score":0.8639864921569824},{"id":"https://openalex.org/C143191323","wikidata":"https://www.wikidata.org/wiki/Q118406","display_name":"Ploidy","level":3,"score":0.844302773475647},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.823661208152771},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7209962010383606},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.5512179732322693},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.5393507480621338},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.49327367544174194},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4170319437980652},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.38895341753959656},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10850530862808228},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06741544604301453},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.05682530999183655},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1071/cp24160","doi":"https://doi.org/10.1071/cp24160","is_oa":false,"landing_page_url":"https://doi.org/10.1071/cp24160","pdf_url":null,"source":{"id":"https://openalex.org/S4210234630","display_name":"Australian Journal of Agricultural Research","issn_l":"0004-9409","issn":["0004-9409","1444-9838","1836-0947","1836-5795"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","norway-1","poland-70","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320302","host_organization_name":"CSIRO Publishing","host_organization_lineage":["https://openalex.org/P4310320302"],"host_organization_lineage_names":["CSIRO Publishing"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Crop & Pasture Science","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8409000039100647,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"sustainable_development_goals_aurora":[{"score":0.7599999904632568,"id":"https://metadata.un.org/sdg/15","display_name":"Life on land"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G6724028146","display_name":null,"funder_award_id":"BT/01/CEIB/12/I/03 Vol-I &Vol-II","funder_id":"https://openalex.org/F4320320717","funder_display_name":"Department of Biotechnology, Ministry of Science and Technology, India"},{"id":"https://openalex.org/G8677425890","display_name":null,"funder_award_id":"F.No.27(5)/2007(Part 1 &2)","funder_id":"https://openalex.org/F4320320769","funder_display_name":"Indian Council of Agricultural Research"}],"funders":[{"id":"https://openalex.org/F4320320717","display_name":"Department of Biotechnology, Ministry of Science and Technology, India","ror":"https://ror.org/03tjsyq23"},{"id":"https://openalex.org/F4320320769","display_name":"Indian Council of Agricultural Research","ror":"https://ror.org/04fw54a43"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1615375178","https://openalex.org/W1923463121","https://openalex.org/W1974116356","https://openalex.org/W1980418450","https://openalex.org/W1985991458","https://openalex.org/W1986236305","https://openalex.org/W1996672800","https://openalex.org/W2003820291","https://openalex.org/W2014094496","https://openalex.org/W2020265469","https://openalex.org/W2038837161","https://openalex.org/W2050694525","https://openalex.org/W2051147812","https://openalex.org/W2073473064","https://openalex.org/W2087044675","https://openalex.org/W2100444509","https://openalex.org/W2102234847","https://openalex.org/W2106882534","https://openalex.org/W2108529208","https://openalex.org/W2112799266","https://openalex.org/W2115155255","https://openalex.org/W2115712987","https://openalex.org/W2116243121","https://openalex.org/W2116668053","https://openalex.org/W2116876050","https://openalex.org/W2139732080","https://openalex.org/W2140784970","https://openalex.org/W2153574607","https://openalex.org/W2161339576","https://openalex.org/W2162157671","https://openalex.org/W2170126301","https://openalex.org/W2175004981","https://openalex.org/W2234054655","https://openalex.org/W2334914905","https://openalex.org/W2404400195","https://openalex.org/W2493345068","https://openalex.org/W2578302932","https://openalex.org/W2588468524","https://openalex.org/W2910281659","https://openalex.org/W2917993989","https://openalex.org/W2937448097","https://openalex.org/W3094286130","https://openalex.org/W3132130461","https://openalex.org/W3165342703","https://openalex.org/W3172734374","https://openalex.org/W3196289655","https://openalex.org/W4285992054"],"related_works":["https://openalex.org/W3194005640","https://openalex.org/W2371634529","https://openalex.org/W2357579792","https://openalex.org/W2369403120","https://openalex.org/W2388719070","https://openalex.org/W3136813739","https://openalex.org/W2390492463","https://openalex.org/W4205675103","https://openalex.org/W4398166144","https://openalex.org/W2606530976"],"abstract_inverted_index":{"Context":[0],"Brassica":[1],"juncea":[2,32,129,199],"germplasm":[3,84],"exhibits":[4],"significant":[5],"variations":[6,20],"in":[7,21,30,45,99,106,126,196,212,221,231],"flowering":[8,28,43,79,170],"timing":[9],"and":[10,23,49,69,89,102,109,122,130,147,158,172],"vernalisation":[11],"requirements.":[12],"However,":[13],"knowledge":[14],"gaps":[15],"exist":[16],"with":[17,243],"respect":[18],"to":[19,38,50,252],"expression":[22,188,194,208,219,229],"the":[24,40,75,192,204,256],"divergent":[25],"evolution":[26],"of":[27,42,53,63,86,114,169,182,186,246,255,259],"genes":[29,44,105,165,217,227],"B.":[31,107,110,128,131,198],"subgenomes.":[33],"Aims":[34],"This":[35,235],"study":[36,236],"aims":[37],"examine":[39],"role":[41],"defining":[46],"trait":[47],"variation":[48,81,220,230],"identify":[51],"indications":[52],"directional":[54,150],"selection":[55,151,248],"on":[56],"these":[57,115,226],"genes.":[58],"Methods":[59],"Employing":[60],"a":[61],"combination":[62],"genome-wide":[64,240],"association":[65,96,241],"studies,":[66],"functional":[67],"genomics":[68],"population":[70],"genetic":[71,76],"assays,":[72],"we":[73],"explored":[74],"architecture":[77],"underlying":[78],"time":[80,171],"within":[82],"expansive":[83],"collections":[85],"this":[87],"allopolyploid":[88],"its":[90],"progenitor":[91],"species.":[92,233],"Key":[93],"results":[94],"Genome-wide":[95],"studies":[97,242],"aided":[98],"predicting":[100],"17":[101],"34":[103],"candidate":[104],"rapa":[108],"juncea,":[111],"respectively.":[112],"Seven":[113],"(FT,":[116],"FLC,":[117],"BAG4,":[118],"ELF4-L2,":[119],"EFM,":[120,145],"SEP4,":[121],"LSH6)":[123],"were":[124],"predicted":[125,164],"both":[127],"rapa.":[132],"Some":[133,216],"genes,":[134],"GA20OX3,":[135],"NF-YA1,":[136],"PI,":[137],"MMP,":[138],"RPS10B,":[139],"CRY2,":[140],"AGL72,":[141],"LFY,":[142],"TOC1,":[143],"ELF5,":[144],"FLC":[146],"TFL1":[148],"exhibited":[149],"as":[152,177,179],"inferred":[153],"from":[154],"negative":[155],"Tajima\u2019s":[156],"D":[157],"Fu\u2019s":[159],"Fs":[160],"statistics.":[161],"Conclusions":[162],"Common":[163],"are":[166,210],"known":[167],"influencers":[168],"phenological":[173],"changes":[174],"between":[175],"species":[176],"well":[178],"across":[180],"zones":[181],"adaptation.":[183],"An":[184],"analysis":[185],"gene":[187,193],"patterns":[189],"indicates":[190],"that":[191,238],"bias":[195],"resynthesised":[197],"could":[200],"be":[201],"influenced":[202],"by":[203],"cytoplasmic":[205],"background.":[206],"Most":[207],"variants":[209],"found":[211],"B":[213],"genome":[214],"copies.":[215],"lacked":[218],"their":[222],"diploid":[223],"progenitors,":[224],"whereas":[225],"exhibit":[228],"polyploid":[232],"Implications":[234],"highlights":[237],"integrating":[239],"molecular":[244],"signals":[245],"natural":[247],"can":[249],"effectively":[250],"contribute":[251],"our":[253],"understanding":[254],"ecological":[257],"genetics":[258],"adaptive":[260],"evolution.":[261]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2025-10-10T00:00:00"}