{"id":"https://openalex.org/W4402903644","doi":"https://doi.org/10.1093/jamiaopen/ooae099","title":"VMAP: Vaginal Microbiome Atlas during Pregnancy","display_name":"VMAP: Vaginal Microbiome Atlas during Pregnancy","publication_year":2024,"publication_date":"2024-07-01","ids":{"openalex":"https://openalex.org/W4402903644","doi":"https://doi.org/10.1093/jamiaopen/ooae099","pmid":"https://pubmed.ncbi.nlm.nih.gov/36993193","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/10055588"},"language":"en","primary_location":{"id":"doi:10.1093/jamiaopen/ooae099","doi":"https://doi.org/10.1093/jamiaopen/ooae099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamiaopen/ooae099","pdf_url":null,"source":{"id":"https://openalex.org/S4210237468","display_name":"JAMIA Open","issn_l":"2574-2531","issn":["2574-2531"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","ki-jl-1","norway-1","oarl","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"JAMIA Open","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/jamiaopen/ooae099","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015406888","display_name":"Antonio P\u00e1rraga-Leo","orcid":"https://orcid.org/0000-0001-9496-6989","observed_orcids":["https://orcid.org/0000-0001-9496-6989"]},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]},{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I4210166036","display_name":"Instituto de Investigaci\u00f3n Sanitaria La Fe","ror":"https://ror.org/05n7v5997","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210166036"]},{"id":"https://openalex.org/I4405265877","display_name":"IVIRMA Global","ror":"https://ror.org/00357qm16","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4405265877"]},{"id":"https://openalex.org/I4405277315","display_name":"Fundaci\u00f3n IVI","ror":"https://ror.org/0288f4f61","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4405277315"]}],"countries":["ES","US"],"is_corresponding":false,"raw_author_name":"Antonio Parraga-Leo","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, Obstetrics and Gynaecology, Universidad de Valencia , Valencia 46010,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","IVIRMA Global Research Alliance, IVI Foundation, Instituto de Investigaci\u00f3n Sanitaria La Fe (IIS La Fe) , Valencia 28023,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, Obstetrics and Gynaecology, Universidad de Valencia , Valencia 46010,","institution_ids":["https://openalex.org/I16097986"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"IVIRMA Global Research Alliance, IVI Foundation, Instituto de Investigaci\u00f3n Sanitaria La Fe (IIS La Fe) , Valencia 28023,","institution_ids":["https://openalex.org/I4210166036","https://openalex.org/I4405265877","https://openalex.org/I4405277315"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030459567","display_name":"Tomiko Oskotsky","orcid":"https://orcid.org/0000-0001-7393-5120","observed_orcids":["https://orcid.org/0000-0001-7393-5120"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tomiko T Oskotsky","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072991042","display_name":"Boris Oskotsky","orcid":"https://orcid.org/0000-0002-9364-7051","observed_orcids":["https://orcid.org/0000-0002-9364-7051"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Boris Oskotsky","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053231338","display_name":"Camilla Wibrand","orcid":"https://orcid.org/0000-0002-8821-2619","observed_orcids":["https://orcid.org/0000-0002-8821-2619"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I2802335433","display_name":"Aarhus University Hospital","ror":"https://ror.org/040r8fr65","country_code":"DK","type":"healthcare","lineage":["https://openalex.org/I2802335433"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Camilla Wibrand","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics and Adolescent Medicine, Aarhus University Hospital , Aarhus 8200,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics and Adolescent Medicine, Aarhus University Hospital , Aarhus 8200,","institution_ids":["https://openalex.org/I2802335433"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018054585","display_name":"Alennie Roldan","orcid":"https://orcid.org/0000-0002-8186-5318","observed_orcids":["https://orcid.org/0000-0002-8186-5318"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alennie Roldan","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042424043","display_name":"Alice Tang","orcid":"https://orcid.org/0000-0003-4745-0714","observed_orcids":["https://orcid.org/0000-0003-4745-0714"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alice S Tang","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003810725","display_name":"Connie W. Y. Ha","orcid":"https://orcid.org/0000-0003-1357-6431","observed_orcids":["https://orcid.org/0000-0003-1357-6431"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Connie W Y Ha","raw_affiliation_strings":["Benioff Center for Microbiome Medicine, Department of Medicine, University of California , San Francisco, CA 94143,","Division of Gastroenterology, Department of Medicine, University of California, San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Benioff Center for Microbiome Medicine, Department of Medicine, University of California , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Division of Gastroenterology, Department of Medicine, University of California, San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063792544","display_name":"Ronald J. Wong","orcid":"https://orcid.org/0000-0003-1205-6936","observed_orcids":["https://orcid.org/0000-0003-1205-6936"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ronald J Wong","raw_affiliation_strings":["Department of Pediatrics, Stanford University School of Medicine , Stanford, CA 94305,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pediatrics, Stanford University School of Medicine , Stanford, CA 94305,","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082949276","display_name":"Samuel S. Minot","orcid":"https://orcid.org/0000-0003-1639-3905","observed_orcids":["https://orcid.org/0000-0003-1639-3905"]},"institutions":[{"id":"https://openalex.org/I4210089486","display_name":"Fred Hutch Cancer Center","ror":"https://ror.org/007ps6h72","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210089486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel S Minot","raw_affiliation_strings":["Data Core, Fred Hutchinson Cancer Center , Seattle, WA 98109,"],"raw_orcid":"https://orcid.org/0000-0003-1639-3905","affiliations":[{"raw_affiliation_string":"Data Core, Fred Hutchinson Cancer Center , Seattle, WA 98109,","institution_ids":["https://openalex.org/I4210089486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091641624","display_name":"Gaia Andreoletti","orcid":"https://orcid.org/0000-0002-0452-0009","observed_orcids":["https://orcid.org/0000-0002-0452-0009"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gaia Andreoletti","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068778085","display_name":"Idit Kosti","orcid":"https://orcid.org/0000-0003-2212-5472","observed_orcids":["https://orcid.org/0000-0003-2212-5472"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Idit Kosti","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077621340","display_name":"Kevin R. Theis","orcid":"https://orcid.org/0000-0002-8690-7599","observed_orcids":["https://orcid.org/0000-0002-8690-7599"]},"institutions":[{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin R Theis","raw_affiliation_strings":["Department of Biochemistry, Microbiology and Immunology, Wayne State University , Detroit, MI 48201,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Microbiology and Immunology, Wayne State University , Detroit, MI 48201,","institution_ids":["https://openalex.org/I185443292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067247266","display_name":"Sherrianne Ng","orcid":"https://orcid.org/0000-0002-4262-7587","observed_orcids":["https://orcid.org/0000-0002-4262-7587"]},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sherrianne Ng","raw_affiliation_strings":["Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002663946","display_name":"Yun Sok Lee","orcid":"https://orcid.org/0000-0001-7967-4734","observed_orcids":["https://orcid.org/0000-0001-7967-4734"]},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yun S Lee","raw_affiliation_strings":["Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010192662","display_name":"Patricia D\u00edaz-Gimeno","orcid":"https://orcid.org/0000-0003-0031-7545","observed_orcids":["https://orcid.org/0000-0003-0031-7545"]},"institutions":[{"id":"https://openalex.org/I4210166036","display_name":"Instituto de Investigaci\u00f3n Sanitaria La Fe","ror":"https://ror.org/05n7v5997","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210166036"]},{"id":"https://openalex.org/I4405265877","display_name":"IVIRMA Global","ror":"https://ror.org/00357qm16","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4405265877"]},{"id":"https://openalex.org/I4405277315","display_name":"Fundaci\u00f3n IVI","ror":"https://ror.org/0288f4f61","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4405277315"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Patricia Diaz-Gimeno","raw_affiliation_strings":["IVIRMA Global Research Alliance, IVI Foundation, Instituto de Investigaci\u00f3n Sanitaria La Fe (IIS La Fe) , Valencia 28023,"],"raw_orcid":"https://orcid.org/0000-0003-0031-7545","affiliations":[{"raw_affiliation_string":"IVIRMA Global Research Alliance, IVI Foundation, Instituto de Investigaci\u00f3n Sanitaria La Fe (IIS La Fe) , Valencia 28023,","institution_ids":["https://openalex.org/I4210166036","https://openalex.org/I4405265877","https://openalex.org/I4405277315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009393702","display_name":"Phillip R. Bennett","orcid":"https://orcid.org/0000-0002-6253-4919","observed_orcids":["https://orcid.org/0000-0002-6253-4919"]},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Phillip R Bennett","raw_affiliation_strings":["Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067317460","display_name":"David A. MacIntyre","orcid":"https://orcid.org/0000-0002-4186-5567","observed_orcids":["https://orcid.org/0000-0002-4186-5567"]},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David A MacIntyre","raw_affiliation_strings":["Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,"],"raw_orcid":"https://orcid.org/0000-0002-4186-5567","affiliations":[{"raw_affiliation_string":"Imperial College Parturition Research Group, Institute of Reproductive and Developmental Biology, Department of Metabolism, Digestion and Reproduction, Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Centre at Imperial College London , London W12 0NN,","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044252504","display_name":"Susan V. Lynch","orcid":"https://orcid.org/0000-0001-5695-7336","observed_orcids":["https://orcid.org/0000-0001-5695-7336"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan V Lynch","raw_affiliation_strings":["Benioff Center for Microbiome Medicine, Department of Medicine, University of California , San Francisco, CA 94143,","Division of Gastroenterology, Department of Medicine, University of California, San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Benioff Center for Microbiome Medicine, Department of Medicine, University of California , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Division of Gastroenterology, Department of Medicine, University of California, San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067511554","display_name":"Roberto J. Romero","orcid":"https://orcid.org/0000-0002-4448-5121","observed_orcids":["https://orcid.org/0000-0002-4448-5121"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210144228","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210144228"]},{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roberto Romero","raw_affiliation_strings":["Department of Epidemiology and Biostatistics, Michigan State University , East Lansing, MI 48824,","Department of Obstetrics and Gynecology, University of Michigan , Ann Arbor, MI 48109,","Pregnancy Research Branch, Division of Obstetrics and Maternal-Fetal Medicine, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, US Department of Health and Human Services , Bethesda, MD 20892,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, Michigan State University , East Lansing, MI 48824,","institution_ids":["https://openalex.org/I87216513"]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, University of Michigan , Ann Arbor, MI 48109,","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Pregnancy Research Branch, Division of Obstetrics and Maternal-Fetal Medicine, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, US Department of Health and Human Services , Bethesda, MD 20892,","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210144228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043404288","display_name":"Adi Laurentiu Tarca","orcid":"https://orcid.org/0000-0003-1712-7588","observed_orcids":["https://orcid.org/0000-0003-1712-7588","https://orcid.org/0000-0002-9281-126X"]},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I185443292","display_name":"Wayne State University","ror":"https://ror.org/01070mq45","country_code":"US","type":"education","lineage":["https://openalex.org/I185443292"]},{"id":"https://openalex.org/I4210144228","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210144228"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adi L Tarca","raw_affiliation_strings":["Center for Molecular Medicine and Genetics, Wayne State University , Detroit, MI 48201,","Department of Computer Science, Wayne State University College of Engineering , Detroit, MI 48202,","Department of Obstetrics and Gynecology, Wayne State University School of Medicine , Detroit, MI 48201,","Pregnancy Research Branch, Division of Obstetrics and Maternal-Fetal Medicine, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, US Department of Health and Human Services , Bethesda, MD 20892,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Molecular Medicine and Genetics, Wayne State University , Detroit, MI 48201,","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Department of Computer Science, Wayne State University College of Engineering , Detroit, MI 48202,","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Department of Obstetrics and Gynecology, Wayne State University School of Medicine , Detroit, MI 48201,","institution_ids":["https://openalex.org/I185443292"]},{"raw_affiliation_string":"Pregnancy Research Branch, Division of Obstetrics and Maternal-Fetal Medicine, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, US Department of Health and Human Services , Bethesda, MD 20892,","institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I4210144228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101779566","display_name":"David K. Stevenson","orcid":"https://orcid.org/0000-0002-7127-0281","observed_orcids":["https://orcid.org/0000-0002-7127-0281"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David K Stevenson","raw_affiliation_strings":["Center for Academic Medicine, Stanford University School of Medicine , Stanford, CA 94304,","Department of Pediatrics, Stanford University School of Medicine , Stanford, CA 94305,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Academic Medicine, Stanford University School of Medicine , Stanford, CA 94304,","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Pediatrics, Stanford University School of Medicine , Stanford, CA 94305,","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031425035","display_name":"Nima Aghaeepour","orcid":"https://orcid.org/0000-0002-6117-8764","observed_orcids":["https://orcid.org/0000-0002-6117-8764"]},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nima Aghaeepour","raw_affiliation_strings":["Department of Anesthesiology, Perioperative, and Pain Medicine, Stanford University School of Medicine , Stanford, CA 94305,","Department of Biomedical Data Sciences, Stanford University School of Medicine , Stanford, CA 94305,","Department of Pediatrics, Stanford University School of Medicine , Stanford, CA 94305,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Anesthesiology, Perioperative, and Pain Medicine, Stanford University School of Medicine , Stanford, CA 94305,","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Biomedical Data Sciences, Stanford University School of Medicine , Stanford, CA 94305,","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]},{"raw_affiliation_string":"Department of Pediatrics, Stanford University School of Medicine , Stanford, CA 94305,","institution_ids":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063888317","display_name":"Jonathan L. Golob","orcid":"https://orcid.org/0000-0003-0009-5815","observed_orcids":["https://orcid.org/0000-0003-0009-5815"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]},{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210114445","display_name":"Michigan Medicine","ror":"https://ror.org/01zcpa714","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210114445"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan L Golob","raw_affiliation_strings":["Division of Infectious Diseases, Department of Internal Medicine, University of Michigan , Ann Arbor, MI 48109,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division of Infectious Diseases, Department of Internal Medicine, University of Michigan , Ann Arbor, MI 48109,","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210114445"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086033147","display_name":"Marina Sirota","orcid":"https://orcid.org/0000-0002-7246-6083","observed_orcids":["https://orcid.org/0000-0002-7246-6083"]},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Marina Sirota","raw_affiliation_strings":["Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bakar Computational Health Sciences Institute, University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"Department of Pediatrics, University of California San Francisco , San Francisco, CA 94158,","institution_ids":["https://openalex.org/I180670191"]},{"raw_affiliation_string":"March of Dimes Prematurity Research Center at the University of California San Francisco , San Francisco, CA 94143,","institution_ids":["https://openalex.org/I180670191"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":16,"corresponding_author_ids":["https://openalex.org/A5086033147"],"corresponding_institution_ids":["https://openalex.org/I180670191"],"apc_list":{"value":3950,"currency":"USD","value_usd":3950},"apc_paid":{"value":3950,"currency":"USD","value_usd":3950},"fwci":1.4701,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.80427632,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"7","issue":"3","first_page":"ooae099","last_page":"ooae099"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10428","display_name":"Reproductive tract infections research","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.00839999970048666,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.00279999990016222,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/vaginal-microbiota","display_name":"vaginal microbiota","score":1.0},{"id":"https://openalex.org/keywords/pregnancy","display_name":"pregnancy","score":1.0},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"interactive visualization","score":0.671999990940094},{"id":"https://openalex.org/keywords/shiny","display_name":"Shiny","score":0.7310000061988831},{"id":"https://openalex.org/keywords/microbial-diversity","display_name":"microbial diversity","score":0.6869999766349792},{"id":"https://openalex.org/keywords/phylotypes","display_name":"phylotypes","score":0.8090000152587891},{"id":"https://openalex.org/keywords/pregnancy-outcomes","display_name":"pregnancy outcomes","score":0.6380000114440918},{"id":"https://openalex.org/keywords/data-aggregation","display_name":"data aggregation","score":0.5189999938011169}],"concepts":[{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.7163288593292236},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6779224872589111},{"id":"https://openalex.org/C2779234561","wikidata":"https://www.wikidata.org/wiki/Q11995","display_name":"Pregnancy","level":2,"score":0.5111189484596252},{"id":"https://openalex.org/C131872663","wikidata":"https://www.wikidata.org/wiki/Q5284418","display_name":"Obstetrics","level":1,"score":0.40702539682388306},{"id":"https://openalex.org/C29456083","wikidata":"https://www.wikidata.org/wiki/Q1221899","display_name":"Gynecology","level":1,"score":0.38886868953704834},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3877788484096527},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3422582149505615},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1899440884590149},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.12720906734466553},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0424063503742218}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1093/jamiaopen/ooae099","doi":"https://doi.org/10.1093/jamiaopen/ooae099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamiaopen/ooae099","pdf_url":null,"source":{"id":"https://openalex.org/S4210237468","display_name":"JAMIA Open","issn_l":"2574-2531","issn":["2574-2531"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","ki-jl-1","norway-1","oarl","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"JAMIA Open","raw_type":"journal-article"},{"id":"doi:10.1101/2023.03.21.23286947","doi":"https://doi.org/10.1101/2023.03.21.23286947","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2023.03.21.23286947","pdf_url":"https://www.medrxiv.org/content/medrxiv/early/2023/04/05/2023.03.21.23286947.full.pdf","source":{"id":"https://openalex.org/S3005729997","display_name":"medRxiv","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"medRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:11430916","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11430916","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11430916/pdf/ooae099.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"JAMIA Open","raw_type":"Text"},{"id":"pmid:36993193","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36993193","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"medRxiv : the preprint server for health sciences","raw_type":"Preprint"},{"id":"pmid:39345789","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39345789","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"JAMIA open","raw_type":"Journal Article"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt0ss064kx","doi":null,"is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/0ss064kx","pdf_url":"https://escholarship.org/content/qt0ss064kx/qt0ss064kx.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"JAMIA Open, vol 7, iss 3","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:10055588","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10055588","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10055588/pdf/nihpp-2023.03.21.23286947v2.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"medRxiv","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire/24295972-5e67-4c66-bc10-355a00665efa","doi":null,"is_oa":true,"landing_page_url":"https://pure.au.dk/portal/en/publications/24295972-5e67-4c66-bc10-355a00665efa","pdf_url":null,"source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Parraga-Leo, A, Oskotsky, T T, Oskotsky, B, Wibrand, C, Roldan, A, Tang, A S, Ha, C W Y, Wong, R J, Minot, S S, Andreoletti, G, Kosti, I, Theis, K R, Ng, S, Lee, Y S, Diaz-Gimeno, P, Bennett, P R, MacIntyre, D A, Lynch, S V, Romero, R, Tarca, A L, Stevenson, D K, Aghaeepour, N, Golob, J L & Sirota, M 2024, 'VMAP : Vaginal Microbiome Atlas during Pregnancy', JAMIA open, vol. 7, no. 3, ooae099. https://doi.org/10.1093/jamiaopen/ooae099","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1093/jamiaopen/ooae099","doi":"https://doi.org/10.1093/jamiaopen/ooae099","is_oa":true,"landing_page_url":"https://doi.org/10.1093/jamiaopen/ooae099","pdf_url":null,"source":{"id":"https://openalex.org/S4210237468","display_name":"JAMIA Open","issn_l":"2574-2531","issn":["2574-2531"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","doyens","ki-jl-1","norway-1","oarl","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310311647","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/P4310311647"],"host_organization_lineage_names":["University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"JAMIA Open","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5683000087738037}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1284009618","display_name":null,"funder_award_id":"HHSN275201300006C","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G1348649281","display_name":null,"funder_award_id":"HHSN275201300006C","funder_id":"https://openalex.org/F4320306085","funder_display_name":"U.S. Department of Health and Human Services"},{"id":"https://openalex.org/G180845625","display_name":"Machine Learning for Integrative Modeling of the Immune System in Clinical Settings","funder_award_id":"R35GM138353","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2671377752","display_name":null,"funder_award_id":"HHSN275201300006C","funder_id":"https://openalex.org/F4320337364","funder_display_name":"National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G3283906091","display_name":"SPRINT: Signature for Pain Recovery IN Teens","funder_award_id":"R61NS114926","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G3388402394","display_name":null,"funder_award_id":"HHSN 275201300006C","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5711785469","display_name":"Dietary Modulation of Neuroinflammation in Age-Related Memory Disorders","funder_award_id":"R01AG058417","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"},{"id":"https://openalex.org/G5750123646","display_name":null,"funder_award_id":"HHSN275201300006C","funder_id":"https://openalex.org/F4320309272","funder_display_name":"Wayne State University"},{"id":"https://openalex.org/G7105508972","display_name":null,"funder_award_id":"FPU18/0177","funder_id":"https://openalex.org/F4320315062","funder_display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades"},{"id":"https://openalex.org/G8672373976","display_name":"Preeclampsia to cardiovascular disease: Life course analysis of biomarkers and risk","funder_award_id":"R01HL139844","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"},{"id":"https://openalex.org/G8751880874","display_name":null,"funder_award_id":"CP20/00118","funder_id":"https://openalex.org/F4320334923","funder_display_name":"Instituto de Salud Carlos III"},{"id":"https://openalex.org/G9000876959","display_name":"UCSF Stanford Endometriosis Center for Discovery, Innovation, Training and Community Engagement","funder_award_id":"P01HD106414","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G9000881304","display_name":"Trio Analysis of Recurrent Pregnancy Loss Integrated Bioinformatics Genomics Study (TRIOS)","funder_award_id":"R01HD105256","funder_id":"https://openalex.org/F4320337611","funder_display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development"},{"id":"https://openalex.org/G9000894250","display_name":"Stanford Alzheimer's Disease Research Center","funder_award_id":"P30AG066515","funder_id":"https://openalex.org/F4320337337","funder_display_name":"National Institute on Aging"}],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320306182","display_name":"March of Dimes Foundation","ror":"https://ror.org/04bd5p711"},{"id":"https://openalex.org/F4320309272","display_name":"Wayne State University","ror":"https://ror.org/01070mq45"},{"id":"https://openalex.org/F4320314691","display_name":"Robertson Foundation","ror":"https://ror.org/04h2x1077"},{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":null},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332622","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54"},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320337364","display_name":"National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"},{"id":"https://openalex.org/F4320337611","display_name":"Eunice Kennedy Shriver National Institute of Child Health and Human Development","ror":"https://ror.org/04byxyr05"},{"id":"https://openalex.org/F4320338421","display_name":"NHLBI Division of Intramural Research","ror":"https://ror.org/023ny1p48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4402903644.pdf","grobid_xml":"https://content.openalex.org/works/W4402903644.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1545338289","https://openalex.org/W1930591173","https://openalex.org/W2025738474","https://openalex.org/W2074974657","https://openalex.org/W2080283023","https://openalex.org/W2102729801","https://openalex.org/W2116041602","https://openalex.org/W2120358246","https://openalex.org/W2482172777","https://openalex.org/W2572899228","https://openalex.org/W2749873900","https://openalex.org/W2782680734","https://openalex.org/W2899896248","https://openalex.org/W2907659791","https://openalex.org/W3108137971","https://openalex.org/W4300690536","https://openalex.org/W4388480797","https://openalex.org/W4390064096"],"related_works":["https://openalex.org/W2787994837","https://openalex.org/W7043834543","https://openalex.org/W1983086029","https://openalex.org/W7101095614","https://openalex.org/W2749938832","https://openalex.org/W2412602225","https://openalex.org/W4389175120","https://openalex.org/W2071463788","https://openalex.org/W3025343845","https://openalex.org/W3145127123"],"abstract_inverted_index":{"Objectives:":[0],"To":[1],"enable":[2],"interactive":[3],"visualization":[4],"of":[5,15,20,40,56,93,101],"the":[6,10,94,102],"vaginal":[7,42,53,103,118],"microbiome":[8,43,54,104,119],"across":[9],"pregnancy":[11,106],"and":[12,18,24,77,96,109,121,125,135],"facilitate":[13],"discovery":[14],"novel":[16],"insights":[17],"generation":[19],"new":[21],"hypotheses.":[22],"Material":[23],"Methods:":[25],"Vaginal":[26],"Microbiome":[27],"Atlas":[28],"during":[29],"Pregnancy":[30],"(VMAP)":[31],"was":[32],"created":[33],"with":[34],"R":[35],"shiny":[36],"to":[37,107,115],"generate":[38],"visualizations":[39],"structured":[41],"data":[44,120],"from":[45,60,133],"multiple":[46],"studies.":[47],"Results:":[48],"VMAP":[49,129],"(http://vmapapp.org)":[50],"visualizes":[51],"3880":[52],"samples":[55],"1402":[57],"pregnant":[58],"individuals":[59],"11":[61],"studies,":[62],"aggregated":[63],"via":[64],"open-source":[65],"tool":[66],"MaLiAmPi.":[67],"Visualized":[68],"features":[69],"include":[70],"diversity":[71],"measures,":[72],"VALENCIA":[73],"community":[74],"state":[75],"types,":[76],"composition":[78],"(phylotypes,":[79],"taxonomy)":[80],"that":[81],"can":[82,130],"be":[83,131],"filtered":[84],"by":[85],"various":[86],"categories.":[87],"Discussion:":[88],"This":[89],"work":[90],"represents":[91],"one":[92],"largest":[95],"most":[97],"geographically":[98],"diverse":[99],"aggregations":[100],"in":[105],"date":[108],"serves":[110],"as":[111,139],"a":[112],"user-friendly":[113],"resource":[114],"further":[116],"analyze":[117],"better":[122],"understand":[123],"pregnancies":[124],"associated":[126],"outcomes.":[127],"Conclusion:":[128],"obtained":[132],"https://github.com/msirota/vmap.git":[134],"is":[136],"currently":[137],"deployed":[138],"an":[140],"online":[141],"app":[142],"for":[143],"non-R":[144],"users.":[145]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2024-09-27T00:00:00"}