{"id":"https://openalex.org/W4402077458","doi":"https://doi.org/10.1128/mra.00713-24","title":"Genome sequence of Bacillus pumilus RI06-95 isolated during a Microcystis bloom in lake Champlain, USA","display_name":"Genome sequence of Bacillus pumilus RI06-95 isolated during a Microcystis bloom in lake Champlain, USA","publication_year":2024,"publication_date":"2024-08-30","ids":{"openalex":"https://openalex.org/W4402077458","doi":"https://doi.org/10.1128/mra.00713-24","pmid":"https://pubmed.ncbi.nlm.nih.gov/39212350"},"language":"en","primary_location":{"id":"doi:10.1128/mra.00713-24","doi":"https://doi.org/10.1128/mra.00713-24","is_oa":true,"landing_page_url":"https://doi.org/10.1128/mra.00713-24","pdf_url":null,"source":{"id":"https://openalex.org/S4210232526","display_name":"Microbiology Resource Announcements","issn_l":"2576-098X","issn":["2576-098X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Resource Announcements","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1128/mra.00713-24","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106878521","display_name":"Ashley Barkley","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I63475719","display_name":"SUNY Plattsburgh","ror":"https://ror.org/033zmj163","country_code":"US","type":"education","lineage":["https://openalex.org/I63475719"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashley Barkley","raw_affiliation_strings":["Biological Sciences Department, State University of New York at Plattsburgh, Plattsburgh, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Sciences Department, State University of New York at Plattsburgh, Plattsburgh, New York, USA","institution_ids":["https://openalex.org/I63475719"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106878522","display_name":"Kermisha Felix","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I63475719","display_name":"SUNY Plattsburgh","ror":"https://ror.org/033zmj163","country_code":"US","type":"education","lineage":["https://openalex.org/I63475719"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kermisha Felix","raw_affiliation_strings":["Biological Sciences Department, State University of New York at Plattsburgh, Plattsburgh, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biological Sciences Department, State University of New York at Plattsburgh, Plattsburgh, New York, USA","institution_ids":["https://openalex.org/I63475719"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113313929","display_name":"Luke Myers","orcid":"https://orcid.org/0000-0002-0775-0416","observed_orcids":["https://orcid.org/0000-0002-0775-0416"]},"institutions":[{"id":"https://openalex.org/I63475719","display_name":"SUNY Plattsburgh","ror":"https://ror.org/033zmj163","country_code":"US","type":"education","lineage":["https://openalex.org/I63475719"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Luke Myers","raw_affiliation_strings":["Lake Champlain Research Institute, State University of New York at Plattsburgh, Plattsburgh, New York, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lake Champlain Research Institute, State University of New York at Plattsburgh, Plattsburgh, New York, USA","institution_ids":["https://openalex.org/I63475719"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081681907","display_name":"Nana Y. D. Ankrah","orcid":"https://orcid.org/0000-0003-0492-545X","observed_orcids":["https://orcid.org/0000-0003-0492-545X"]},"institutions":[{"id":"https://openalex.org/I63475719","display_name":"SUNY Plattsburgh","ror":"https://ror.org/033zmj163","country_code":"US","type":"education","lineage":["https://openalex.org/I63475719"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nana Y. D. Ankrah","raw_affiliation_strings":["Biological Sciences Department, State University of New York at Plattsburgh, Plattsburgh, New York, USA"],"raw_orcid":"https://orcid.org/0000-0003-0492-545X","affiliations":[{"raw_affiliation_string":"Biological Sciences Department, State University of New York at Plattsburgh, Plattsburgh, New York, USA","institution_ids":["https://openalex.org/I63475719"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I63475719"],"apc_list":null,"apc_paid":null,"fwci":0.2355,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.44510746,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":"10","first_page":"e0071324","last_page":"e0071324"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7871000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.7871000170707703,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10236","display_name":"Aquatic Ecosystems and Phytoplankton Dynamics","score":0.06430000066757202,"subfield":{"id":"https://openalex.org/subfields/2304","display_name":"Environmental Chemistry"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.050999999046325684,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacillus-pumilus","display_name":"Bacillus pumilus","score":0.9919999837875366},{"id":"https://openalex.org/keywords/complete-genome-sequence","display_name":"complete genome sequence","score":0.8059999942779541},{"id":"https://openalex.org/keywords/microcystis-blooms","display_name":"Microcystis blooms","score":0.9760000109672546},{"id":"https://openalex.org/keywords/lake-champlain","display_name":"Lake Champlain","score":0.7960000038146973},{"id":"https://openalex.org/keywords/plasmids","display_name":"plasmids","score":0.8220000267028809},{"id":"https://openalex.org/keywords/bacterial-chromosome","display_name":"bacterial chromosome","score":0.5260000228881836},{"id":"https://openalex.org/keywords/gc-content","display_name":"GC content","score":0.7590000033378601}],"concepts":[{"id":"https://openalex.org/C2778187402","wikidata":"https://www.wikidata.org/wiki/Q4838979","display_name":"Bacillus pumilus","level":3,"score":0.9068408012390137},{"id":"https://openalex.org/C155567681","wikidata":"https://www.wikidata.org/wiki/Q2987425","display_name":"Bloom","level":2,"score":0.7178281545639038},{"id":"https://openalex.org/C2776056151","wikidata":"https://www.wikidata.org/wiki/Q309928","display_name":"Microcystis","level":4,"score":0.6633504033088684},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5765228867530823},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4490273594856262},{"id":"https://openalex.org/C2779669040","wikidata":"https://www.wikidata.org/wiki/Q93315","display_name":"Cyanobacteria","level":3,"score":0.3757469654083252},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.36686792969703674},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2754729986190796},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.18948110938072205},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.16334456205368042},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.10189864039421082}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1128/mra.00713-24","doi":"https://doi.org/10.1128/mra.00713-24","is_oa":true,"landing_page_url":"https://doi.org/10.1128/mra.00713-24","pdf_url":null,"source":{"id":"https://openalex.org/S4210232526","display_name":"Microbiology Resource Announcements","issn_l":"2576-098X","issn":["2576-098X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Resource Announcements","raw_type":"journal-article"},{"id":"pmid:39212350","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39212350","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology resource announcements","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11465950","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11465950","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11465950/pdf/mra.00713-24.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Microbiol Resour Announc","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1128/mra.00713-24","doi":"https://doi.org/10.1128/mra.00713-24","is_oa":true,"landing_page_url":"https://doi.org/10.1128/mra.00713-24","pdf_url":null,"source":{"id":"https://openalex.org/S4210232526","display_name":"Microbiology Resource Announcements","issn_l":"2576-098X","issn":["2576-098X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Resource Announcements","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309644","display_name":"State University of New York","ror":"https://ror.org/01q1z8k08"},{"id":"https://openalex.org/F4320332515","display_name":"State University of New York Plattsburgh","ror":"https://ror.org/033zmj163"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W2112364185","https://openalex.org/W2470052926","https://openalex.org/W2528678666","https://openalex.org/W2584642022","https://openalex.org/W2788228074","https://openalex.org/W2987650093","https://openalex.org/W3129837294","https://openalex.org/W4313461253","https://openalex.org/W4368358469","https://openalex.org/W4392256960"],"related_works":["https://openalex.org/W2364689327","https://openalex.org/W1964019338","https://openalex.org/W2795173297","https://openalex.org/W2384999993","https://openalex.org/W2994920160","https://openalex.org/W2993859458","https://openalex.org/W2388114481","https://openalex.org/W1202967941","https://openalex.org/W2270080605","https://openalex.org/W2361137974"],"abstract_inverted_index":{"ABSTRACT":[0],"Here,":[1],"we":[2],"present":[3],"the":[4],"complete":[5],"genome":[6,22],"sequence":[7],"of":[8,32],"Bacillus":[9],"pumilus":[10],"RI06-95":[11],"isolated":[12],"during":[13],"a":[14,24,29],"Microcystis":[15],"bloom":[16],"in":[17],"Lake":[18],"Champlain.":[19],"The":[20],"assembled":[21],"comprises":[23],"3.8":[25],"Mbp":[26],"chromosome":[27],"with":[28],"GC":[30,40,46],"content":[31,41,47],"42%,":[33],"and":[34,43],"two":[35],"plasmids,":[36],"pPZZ84":[37],"6.4":[38],"Kbp,":[39],"37%":[42],"pSHB9":[44],"97Kbp,":[45],"36%.":[48]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}