{"id":"https://openalex.org/W4401928877","doi":"https://doi.org/10.22161/ijeab.94.37","title":"Genome-wide identification, Characterization, and Expression analysis of the Caffeic Acid O-Methyl Transferase (COMT) Gene Family of Sorghum Bicolor","display_name":"Genome-wide identification, Characterization, and Expression analysis of the Caffeic Acid O-Methyl Transferase (COMT) Gene Family of Sorghum Bicolor","publication_year":2024,"publication_date":"2024-01-01","ids":{"openalex":"https://openalex.org/W4401928877","doi":"https://doi.org/10.22161/ijeab.94.37"},"language":"en","primary_location":{"id":"doi:10.22161/ijeab.94.37","doi":"https://doi.org/10.22161/ijeab.94.37","is_oa":true,"landing_page_url":"http://dx.doi.org/10.22161/ijeab.94.37","pdf_url":"https://ijeab.com/upload_document/issue_files/37IJEAB-108202442-Genome.pdf","source":{"id":"https://openalex.org/S2765074229","display_name":"International Journal of Environment Agriculture and Biotechnology","issn_l":"2456-1878","issn":["2456-1878"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","vabb-shw"],"host_organization":"https://openalex.org/P4362724893","host_organization_name":"Infogain Publication","host_organization_lineage":["https://openalex.org/P4362724893"],"host_organization_lineage_names":["Infogain Publication"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Environment, Agriculture and Biotechnology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://ijeab.com/upload_document/issue_files/37IJEAB-108202442-Genome.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094166413","display_name":"Prashanth Bollempally","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8975392","display_name":"Osmania University","ror":"https://ror.org/030sjb889","country_code":"IN","type":"education","lineage":["https://openalex.org/I8975392"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prashanth Bollempally","raw_affiliation_strings":["Department of Genetics , Osmania University , Hyderabad - 500 007 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics , Osmania University , Hyderabad - 500 007 , India","institution_ids":["https://openalex.org/I8975392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102257561","display_name":"Anumandla Vinod Kumar","orcid":"https://orcid.org/0000-0003-1637-9038","observed_orcids":["https://orcid.org/0000-0003-1637-9038"]},"institutions":[{"id":"https://openalex.org/I8975392","display_name":"Osmania University","ror":"https://ror.org/030sjb889","country_code":"IN","type":"education","lineage":["https://openalex.org/I8975392"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Vinod Kumar Anumandla","raw_affiliation_strings":["Department of Genetics , Osmania University , Hyderabad - 500 007 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics , Osmania University , Hyderabad - 500 007 , India","institution_ids":["https://openalex.org/I8975392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106899374","display_name":"ana Priyadarshani Kanathala","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8975392","display_name":"Osmania University","ror":"https://ror.org/030sjb889","country_code":"IN","type":"education","lineage":["https://openalex.org/I8975392"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"ana Priyadarshani Kanathala","raw_affiliation_strings":["Centre for Plant Molecular Biology , Osmania University , Hyderabad - 500 007 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Plant Molecular Biology , Osmania University , Hyderabad - 500 007 , India","institution_ids":["https://openalex.org/I8975392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000430583","display_name":"Srinivas Naik Kethavath","orcid":"https://orcid.org/0000-0002-6459-3242","observed_orcids":["https://orcid.org/0000-0002-6459-3242"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Srinivas Naik , Kethavath","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5073876310","display_name":"Prashant Singam","orcid":"https://orcid.org/0009-0003-6718-449X","observed_orcids":["https://orcid.org/0009-0003-6718-449X"]},"institutions":[{"id":"https://openalex.org/I8975392","display_name":"Osmania University","ror":"https://ror.org/030sjb889","country_code":"IN","type":"education","lineage":["https://openalex.org/I8975392"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Prashant Singam","raw_affiliation_strings":["Department of Genetics , Osmania University , Hyderabad - 500 007 , India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics , Osmania University , Hyderabad - 500 007 , India","institution_ids":["https://openalex.org/I8975392"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"9","issue":"4","first_page":"305","last_page":"328"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11237","display_name":"Plant Gene Expression Analysis","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.005200000014156103,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/caffeic-acid-o-methyltransferase","display_name":"caffeic acid O-methyltransferase","score":0.9890000224113464},{"id":"https://openalex.org/keywords/sorghum","display_name":"sorghum","score":0.9990000128746033},{"id":"https://openalex.org/keywords/monolignol-biosynthesis","display_name":"monolignol biosynthesis","score":0.9290000200271606},{"id":"https://openalex.org/keywords/phenylalanine-metabolism","display_name":"phenylalanine metabolism","score":0.8259999752044678},{"id":"https://openalex.org/keywords/lignin-content","display_name":"lignin content","score":0.8519999980926514},{"id":"https://openalex.org/keywords/abiotic-stress-tolerance","display_name":"abiotic stress tolerance","score":0.9300000071525574},{"id":"https://openalex.org/keywords/gene-family-evolution","display_name":"gene family evolution","score":0.7080000042915344},{"id":"https://openalex.org/keywords/phylogenetic-classification","display_name":"phylogenetic classification","score":0.7979999780654907},{"id":"https://openalex.org/keywords/conserved-motifs","display_name":"conserved motifs","score":0.7639999985694885},{"id":"https://openalex.org/keywords/regulatory-elements","display_name":"regulatory elements","score":0.7540000081062317},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.625},{"id":"https://openalex.org/keywords/transcription-factor-binding","display_name":"transcription factor binding","score":0.8730000257492065},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.765999972820282}],"concepts":[{"id":"https://openalex.org/C2776376580","wikidata":"https://www.wikidata.org/wiki/Q407355","display_name":"Transferase","level":3,"score":0.6007804274559021},{"id":"https://openalex.org/C2778224086","wikidata":"https://www.wikidata.org/wiki/Q414116","display_name":"Caffeic acid","level":3,"score":0.5930095911026001},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5752629637718201},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5267942547798157},{"id":"https://openalex.org/C2778157034","wikidata":"https://www.wikidata.org/wiki/Q12111","display_name":"Sorghum","level":2,"score":0.5114492177963257},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4757411479949951},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4516611695289612},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4046747088432312},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.21056967973709106},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.1920042634010315},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.17190557718276978},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C2778004101","wikidata":"https://www.wikidata.org/wiki/Q133948","display_name":"Antioxidant","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.22161/ijeab.94.37","doi":"https://doi.org/10.22161/ijeab.94.37","is_oa":true,"landing_page_url":"http://dx.doi.org/10.22161/ijeab.94.37","pdf_url":"https://ijeab.com/upload_document/issue_files/37IJEAB-108202442-Genome.pdf","source":{"id":"https://openalex.org/S2765074229","display_name":"International Journal of Environment Agriculture and Biotechnology","issn_l":"2456-1878","issn":["2456-1878"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","vabb-shw"],"host_organization":"https://openalex.org/P4362724893","host_organization_name":"Infogain Publication","host_organization_lineage":["https://openalex.org/P4362724893"],"host_organization_lineage_names":["Infogain Publication"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Environment, Agriculture and Biotechnology","raw_type":"journal-article"},{"id":"pmh:oai:neliti.com:690549","doi":null,"is_oa":false,"landing_page_url":"https://www.neliti.com/publications/690549/genome-wide-identification-characterization-and-expression-analysis-of-the-caffe","pdf_url":null,"source":{"id":"https://openalex.org/S7407055263","display_name":"Neliti","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Journal of Environment, Agriculture and Biotechnology","raw_type":"Journal:eArticle"}],"best_oa_location":{"id":"doi:10.22161/ijeab.94.37","doi":"https://doi.org/10.22161/ijeab.94.37","is_oa":true,"landing_page_url":"http://dx.doi.org/10.22161/ijeab.94.37","pdf_url":"https://ijeab.com/upload_document/issue_files/37IJEAB-108202442-Genome.pdf","source":{"id":"https://openalex.org/S2765074229","display_name":"International Journal of Environment Agriculture and Biotechnology","issn_l":"2456-1878","issn":["2456-1878"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","vabb-shw"],"host_organization":"https://openalex.org/P4362724893","host_organization_name":"Infogain Publication","host_organization_lineage":["https://openalex.org/P4362724893"],"host_organization_lineage_names":["Infogain Publication"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"International Journal of Environment, Agriculture and Biotechnology","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5365999937057495,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G4867707873","display_name":null,"funder_award_id":"2019-EMR-I","funder_id":"https://openalex.org/F4320320721","funder_display_name":"Council of Scientific and Industrial Research, India"}],"funders":[{"id":"https://openalex.org/F4320320719","display_name":"Department of Science and Technology, Ministry of Science and Technology, India","ror":"https://ror.org/0101xrq71"},{"id":"https://openalex.org/F4320320721","display_name":"Council of Scientific and Industrial Research, India","ror":"https://ror.org/021wm7p51"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401928877.pdf","grobid_xml":"https://content.openalex.org/works/W4401928877.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4289172583","https://openalex.org/W4200377449","https://openalex.org/W2297665106","https://openalex.org/W328596940","https://openalex.org/W4283837330","https://openalex.org/W4408644854","https://openalex.org/W2039452276","https://openalex.org/W4411462891","https://openalex.org/W7101004627","https://openalex.org/W2801971546"],"abstract_inverted_index":{"Caffeic":[0],"acid":[1,34],"O-methyltransferases":[2],"(COMTs)":[3],"are":[4,27,37],"essential":[5],"enzymes":[6,26],"for":[7,29,41,192,231,249],"producing":[8],"natural":[9],"products":[10],"in":[11,15,71,84,109,166,223,239],"plants,":[12],"specifically":[13],"involved":[14],"the":[16,21,30,38,52,67,88,105,115,118,129,142,159,167,213,235,240,250],"phenylalanine":[17],"metabolic":[18],"pathway":[19,170,191],"and":[20,62,104,123,135,151,180,206,244,257],"monolignol":[22,168],"biosynthetic":[23,169,190],"pathway.":[24],"These":[25,226],"responsible":[28],"methylation":[31],"of":[32,51,66,90,117,131,144,155,171,175,216,237,242,252],"caffeic":[33],"compounds,":[35],"which":[36],"building":[39],"blocks":[40],"many":[42],"plant-derived":[43],"compounds":[44],"with":[45,133,254,259],"various":[46],"biological":[47],"activities.":[48],"The":[49,101],"investigation":[50],"evolutionary":[53,91],"divergence,":[54],"expression":[55,182],"patterns":[56,108],"under":[57,219],"diverse":[58],"abiotic":[59,220,261],"stress":[60,221,262],"conditions,":[61],"lignin":[63,189,217],"content-related":[64],"features":[65],"COMT":[68,146,163],"gene":[69,102,181],"family":[70],"Sorghum":[72,145,243,253],"has":[73],"not":[74],"been":[75,126],"explored.":[76],"In":[77],"this":[78],"study,":[79],"forty-eight":[80],"SbCOMTs":[81,94,132,200,238],"were":[82,95,112,203,210],"identified":[83],"S.bicolor.":[85],"Based":[86],"on":[87,234],"examination":[89],"relationships,":[92],"48":[93],"classified":[96],"into":[97],"two":[98,199],"distinct":[99],"categories.":[100],"characterization":[103],"conserved":[106],"motif":[107],"each":[110],"group":[111],"similar,":[113],"demonstrating":[114],"reliability":[116],"phylogenetic":[119],"categorization.":[120],"Chromosomes":[121],"5":[122],"7":[124,136],"have":[125],"found":[127,197],"as":[128],"hotspot":[130],"10":[134],"genes":[137,147,164],"respectively.":[138],"Phylogenetic":[139],"analysis":[140,183],"revealed":[141],"conservation":[143],"among":[148],"Zea":[149],"mays":[150],"Oryza":[152],"sativa.":[153],"Investigation":[154],"regulatory":[156],"elements":[157],"specifies":[158],"significant":[160],"roles":[161,236],"that":[162,198],"play":[165],"S.":[172,224],"bicolor.":[173,225],"Analysis":[174],"miRNA,":[176],"transcription":[177],"factor":[178],"binding,":[179],"provides":[184],"insights":[185],"to":[186,212],"further":[187,232],"engineer":[188],"better":[193],"biofuel":[194],"yield.":[195],"We":[196],"(SbCOMT26&":[201],"36)":[202],"highly":[204],"expressed":[205],"their":[207],"relative":[208],"contents":[209],"similar":[211],"variation":[214],"drift":[215],"content":[218],"conditions":[222],"results":[227],"provide":[228],"a":[229],"clue":[230],"study":[233],"development":[241],"could":[245],"favourably":[246],"be":[247],"foundations":[248],"cultivation":[251],"higher":[255],"biomass":[256],"yield":[258],"enhanced":[260],"tolerance.":[263]},"counts_by_year":[],"updated_date":"2026-10-12T09:40:04.860316","created_date":"2024-08-28T00:00:00"}
