{"id":"https://openalex.org/W4401712938","doi":"https://doi.org/10.1371/journal.pone.0350014","title":"What did the dove sing to Pope Gregory? Ancestral melody reconstruction in Gregorian chant using Bayesian phylogenetics","display_name":"What did the dove sing to Pope Gregory? Ancestral melody reconstruction in Gregorian chant using Bayesian phylogenetics","publication_year":2026,"publication_date":"2026-05-29","ids":{"openalex":"https://openalex.org/W4401712938","doi":"https://doi.org/10.1371/journal.pone.0350014","pmid":"https://pubmed.ncbi.nlm.nih.gov/42213652","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13221024"},"language":"en","primary_location":{"id":"doi:10.1371/journal.pone.0350014","doi":"https://doi.org/10.1371/journal.pone.0350014","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0350014","pdf_url":null,"source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS One","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1371/journal.pone.0350014","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027350828","display_name":"Gustavo A. Ballen","orcid":"https://orcid.org/0000-0001-5424-8608","observed_orcids":["https://orcid.org/0000-0001-5424-8608"]},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Gustavo A. Ballen","raw_affiliation_strings":["Instituto de Biociencias de Botucatu, Universidade Estadual Paulista"],"raw_orcid":"https://orcid.org/0000-0001-5424-8608","affiliations":[{"raw_affiliation_string":"Instituto de Biociencias de Botucatu, Universidade Estadual Paulista","institution_ids":["https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032372731","display_name":"Kl\u00e1ra Hedvika M\u00fchlov\u00e1","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Kl\u00e1ra Hedvika M\u00fchlov\u00e1","raw_affiliation_strings":["Institute of Musicology, Masaryk University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Musicology, Masaryk University","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005276940","display_name":"Jan Haji\u010d","orcid":"https://orcid.org/0000-0002-9207-567X","observed_orcids":["https://orcid.org/0000-0002-9207-567X"]},"institutions":[{"id":"https://openalex.org/I202391551","display_name":"Czech Academy of Sciences","ror":"https://ror.org/053avzc18","country_code":"CZ","type":"government","lineage":["https://openalex.org/I202391551"]},{"id":"https://openalex.org/I4210134641","display_name":"Czech Academy of Sciences, Masaryk Institute and Archives","ror":"https://ror.org/03nvfe914","country_code":"CZ","type":"facility","lineage":["https://openalex.org/I202391551","https://openalex.org/I4210134641"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Jan Haji\u010d","raw_affiliation_strings":["Masaryk Institute and Archive, Czech Academy of Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Masaryk Institute and Archive, Czech Academy of Sciences","institution_ids":["https://openalex.org/I202391551","https://openalex.org/I4210134641"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5027350828"],"corresponding_institution_ids":["https://openalex.org/I879563668"],"apc_list":{"value":2382,"currency":"USD","value_usd":2382},"apc_paid":{"value":2382,"currency":"USD","value_usd":2382},"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.00055074,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"21","issue":"5","first_page":"e0350014","last_page":"e0350014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10941","display_name":"Musicology and Musical Analysis","score":0.7401999831199646,"subfield":{"id":"https://openalex.org/subfields/1210","display_name":"Music"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10941","display_name":"Musicology and Musical Analysis","score":0.7401999831199646,"subfield":{"id":"https://openalex.org/subfields/1210","display_name":"Music"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11349","display_name":"Music Technology and Sound Studies","score":0.1370999962091446,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12090","display_name":"Language and cultural evolution","score":0.06109999865293503,"subfield":{"id":"https://openalex.org/subfields/3316","display_name":"Cultural Studies"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gregorian-chant","display_name":"Gregorian chant","score":0.9990000128746033},{"id":"https://openalex.org/keywords/ancestral-state-reconstruction","display_name":"ancestral state reconstruction","score":0.8149999976158142},{"id":"https://openalex.org/keywords/bayesian-phylogenetics","display_name":"Bayesian phylogenetics","score":0.8830000162124634},{"id":"https://openalex.org/keywords/divergence-time-estimation","display_name":"divergence time estimation","score":0.9440000057220459},{"id":"https://openalex.org/keywords/music-history","display_name":"music history","score":0.4699999988079071},{"id":"https://openalex.org/keywords/cultural-transmission","display_name":"cultural transmission","score":0.8500000238418579}],"concepts":[{"id":"https://openalex.org/C109703566","wikidata":"https://www.wikidata.org/wiki/Q962709","display_name":"Dove","level":2,"score":0.7157176733016968},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.5600895881652832},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.46714162826538086},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.3437688946723938},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2153228521347046},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.18119698762893677},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.12350654602050781},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009146","descriptor_name":"Music","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1371/journal.pone.0350014","doi":"https://doi.org/10.1371/journal.pone.0350014","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0350014","pdf_url":null,"source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS One","raw_type":"journal-article"},{"id":"doi:10.1101/2024.08.19.608653","doi":"https://doi.org/10.1101/2024.08.19.608653","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2024.08.19.608653","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:42213652","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42213652","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PloS one","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13221024","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13221024/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLoS One","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:fffb38fff49047fe8eb13374423675e0","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/fffb38fff49047fe8eb13374423675e0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PLoS ONE, Vol 21, Iss 5, p e0350014 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1371/journal.pone.0350014","doi":"https://doi.org/10.1371/journal.pone.0350014","is_oa":true,"landing_page_url":"https://doi.org/10.1371/journal.pone.0350014","pdf_url":null,"source":{"id":"https://openalex.org/S202381698","display_name":"PLoS ONE","issn_l":"1932-6203","issn":["1932-6203"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-c","doyens","erih-plus","jufo-1","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310315706","host_organization_name":"Public Library of Science","host_organization_lineage":["https://openalex.org/P4310315706"],"host_organization_lineage_names":["Public Library of Science"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"PLOS One","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality education","score":0.5799999833106995}],"study_designs":[],"awards":[{"id":"https://openalex.org/G4469992975","display_name":null,"funder_award_id":"23/07838-1","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1510330297","https://openalex.org/W1586410793","https://openalex.org/W1897064680","https://openalex.org/W1970076562","https://openalex.org/W1983002447","https://openalex.org/W2039879168","https://openalex.org/W2054016078","https://openalex.org/W2059290467","https://openalex.org/W2090523561","https://openalex.org/W2108034499","https://openalex.org/W2110835349","https://openalex.org/W2116474217","https://openalex.org/W2117443107","https://openalex.org/W2118048521","https://openalex.org/W2122082385","https://openalex.org/W2136933286","https://openalex.org/W2143567410","https://openalex.org/W2146058063","https://openalex.org/W2160378127","https://openalex.org/W2324734435","https://openalex.org/W2485563390","https://openalex.org/W2525317240","https://openalex.org/W2622472591","https://openalex.org/W2883251903","https://openalex.org/W2952434011","https://openalex.org/W3092463287","https://openalex.org/W3096080472","https://openalex.org/W3097262270","https://openalex.org/W3111763185","https://openalex.org/W3215555164","https://openalex.org/W4210524136","https://openalex.org/W4213374686","https://openalex.org/W4250847479","https://openalex.org/W4251560490","https://openalex.org/W4302329889","https://openalex.org/W4323350570","https://openalex.org/W4381332820","https://openalex.org/W4387993580","https://openalex.org/W4388353485","https://openalex.org/W4390608966","https://openalex.org/W4394767791","https://openalex.org/W4401528186","https://openalex.org/W4408418934"],"related_works":["https://openalex.org/W4417006366","https://openalex.org/W6892539965","https://openalex.org/W7135784978","https://openalex.org/W4416875783","https://openalex.org/W3089033994","https://openalex.org/W368951388","https://openalex.org/W2979679658","https://openalex.org/W2796432021","https://openalex.org/W3017324376","https://openalex.org/W611060165"],"abstract_inverted_index":{"An":[0],"attractive":[1],"goal":[2],"in":[3,109,133,138],"the":[4,56,70,107,114,130,162,168],"study":[5,55],"of":[6,58,66,125,129,150,180],"Gregorian":[7],"chant":[8,26,59,67,151],"melodies":[9,13,126,174],"is":[10],"reconstructing":[11,187],"unobserved":[12],"as":[14,24,51,76],"they":[15,83],"may":[16],"have":[17,48],"been":[18],"transmitted":[19],"along":[20],"their":[21,87,136],"history,":[22],"especially":[23],"early":[25],"notation":[27],"does":[28],"not":[29],"capture":[30],"pitch":[31],"exactly.":[32],"We":[33,95,157],"propose":[34],"doing":[35],"this":[36,159],"computationally":[37],"using":[38,178],"Ancestral":[39,77,118],"State":[40,78,119],"Reconstruction":[41,79],"over":[42],"phylogenetic":[43,46],"trees.":[44],"Bayesian":[45],"trees":[47,72],"shown":[49],"promise":[50],"a":[52,63,110,148,154],"tool":[53],"to":[54,102,135,161],"evolution":[57],"melodies,":[60],"by":[61],"inferring":[62],"plausible":[64],"topology":[65],"transmission.":[68],"However,":[69],"inferred":[71],"cannot":[73],"be":[74],"used":[75],"inputs":[80],"directly,":[81],"because":[82],"are":[84],"undirected,":[85],"and":[86,92,105,145,166,173],"branch":[88],"lengths":[89],"conflate":[90],"time":[91,115,139],"evolutionary":[93],"rate.":[94],"therefore":[96],"first":[97],"apply":[98],"Divergence":[99,142],"Time":[100,143],"Estimation":[101],"separate":[103],"them":[104],"represent":[106],"tree":[108],"directed":[111],"form":[112],"on":[113],"dimension.":[116],"Using":[117],"Reconstruction,":[120],"we":[121],"then":[122],"obtain":[123],"reconstructions":[124],"for":[127,186],"each":[128],"ancestral":[131],"nodes,":[132],"addition":[134],"distribution":[137],"obtained":[140],"from":[141],"Estimation,":[144],"thus":[146],"recover":[147],"phylogeny":[149],"melody":[152],"with":[153],"music-historical":[155],"interpretation.":[156],"applied":[158],"method":[160],"Christmas":[163],"Vespers":[164],"dataset,":[165],"compare":[167],"results":[169],"against":[170],"musicological":[171],"knowledge":[172],"reconstructed":[175],"at":[176],"Solesmes":[177],"methods":[179],"contemporary":[181],"philology,":[182],"which":[183],"shows":[184],"potential":[185],"cultural":[188],"transmission":[189],"through":[190],"time.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2024-08-20T00:00:00"}
