{"id":"https://openalex.org/W4401413015","doi":"https://doi.org/10.1093/jambio/lxae202","title":"The fungus Aphanoascella galapagosensis affects bacterial diversity of Galapagos giant tortoise carapaces","display_name":"The fungus Aphanoascella galapagosensis affects bacterial diversity of Galapagos giant tortoise carapaces","publication_year":2024,"publication_date":"2024-08-01","ids":{"openalex":"https://openalex.org/W4401413015","doi":"https://doi.org/10.1093/jambio/lxae202","pmid":"https://pubmed.ncbi.nlm.nih.gov/39108090"},"language":"en","primary_location":{"id":"doi:10.1093/jambio/lxae202","doi":"https://doi.org/10.1093/jambio/lxae202","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jambio/lxae202","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036815020","display_name":"Miguel F. Perea-Brugal","orcid":"https://orcid.org/0000-0001-6566-6178","observed_orcids":["https://orcid.org/0000-0001-6566-6178"]},"institutions":[{"id":"https://openalex.org/I4210126183","display_name":"Universidad del Azuay","ror":"https://ror.org/037xrmj59","country_code":"EC","type":"education","lineage":["https://openalex.org/I4210126183"]}],"countries":["EC"],"is_corresponding":false,"raw_author_name":"Miguel Perea\u00a0Brugal","raw_affiliation_strings":["Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador"],"raw_orcid":"https://orcid.org/0000-0001-6566-6178","affiliations":[{"raw_affiliation_string":"Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador","institution_ids":["https://openalex.org/I4210126183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093372452","display_name":"Manuela Burbano","orcid":"https://orcid.org/0009-0000-2309-5768","observed_orcids":["https://orcid.org/0009-0000-2309-5768"]},"institutions":[{"id":"https://openalex.org/I4210126183","display_name":"Universidad del Azuay","ror":"https://ror.org/037xrmj59","country_code":"EC","type":"education","lineage":["https://openalex.org/I4210126183"]}],"countries":["EC"],"is_corresponding":false,"raw_author_name":"Manuela Burbano\u00a0Moscoso","raw_affiliation_strings":["Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador"],"raw_orcid":"https://orcid.org/0009-0000-2309-5768","affiliations":[{"raw_affiliation_string":"Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador","institution_ids":["https://openalex.org/I4210126183"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064671865","display_name":"Ainoa Nieto\u2010Claudin","orcid":"https://orcid.org/0000-0001-5856-3779","observed_orcids":["https://orcid.org/0000-0001-5856-3779"]},"institutions":[{"id":"https://openalex.org/I126860399","display_name":"Charles Darwin Foundation","ror":"https://ror.org/01h9g5w38","country_code":"EC","type":"nonprofit","lineage":["https://openalex.org/I126860399"]},{"id":"https://openalex.org/I4210129839","display_name":"Saint Louis Zoo","ror":"https://ror.org/03g0fjg84","country_code":"US","type":"archive","lineage":["https://openalex.org/I4210129839"]}],"countries":["EC","US"],"is_corresponding":false,"raw_author_name":"Ainoa Nieto-Claud\u00edn","raw_affiliation_strings":["Charles Darwin Foundation, Charles Darwin Avenue , Santa Cruz 200350, Galapagos Islands , Ecuador","Saint Louis Zoo Institute for Conservation Medicine , One Government Drive, Saint Louis, MO 63110 , United States"],"raw_orcid":"https://orcid.org/0000-0001-5856-3779","affiliations":[{"raw_affiliation_string":"Charles Darwin Foundation, Charles Darwin Avenue , Santa Cruz 200350, Galapagos Islands , Ecuador","institution_ids":["https://openalex.org/I126860399"]},{"raw_affiliation_string":"Saint Louis Zoo Institute for Conservation Medicine , One Government Drive, Saint Louis, MO 63110 , United States","institution_ids":["https://openalex.org/I4210129839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089189825","display_name":"Sharon L. Deem","orcid":"https://orcid.org/0000-0002-2549-3636","observed_orcids":["https://orcid.org/0000-0002-2549-3636"]},"institutions":[{"id":"https://openalex.org/I126860399","display_name":"Charles Darwin Foundation","ror":"https://ror.org/01h9g5w38","country_code":"EC","type":"nonprofit","lineage":["https://openalex.org/I126860399"]},{"id":"https://openalex.org/I4210129839","display_name":"Saint Louis Zoo","ror":"https://ror.org/03g0fjg84","country_code":"US","type":"archive","lineage":["https://openalex.org/I4210129839"]}],"countries":["EC","US"],"is_corresponding":false,"raw_author_name":"Sharon L Deem","raw_affiliation_strings":["Charles Darwin Foundation, Charles Darwin Avenue , Santa Cruz 200350, Galapagos Islands , Ecuador","Saint Louis Zoo Institute for Conservation Medicine , One Government Drive, Saint Louis, MO 63110 , United States"],"raw_orcid":"https://orcid.org/0000-0002-2549-3636","affiliations":[{"raw_affiliation_string":"Charles Darwin Foundation, Charles Darwin Avenue , Santa Cruz 200350, Galapagos Islands , Ecuador","institution_ids":["https://openalex.org/I126860399"]},{"raw_affiliation_string":"Saint Louis Zoo Institute for Conservation Medicine , One Government Drive, Saint Louis, MO 63110 , United States","institution_ids":["https://openalex.org/I4210129839"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050913527","display_name":"David C. Siddons","orcid":"https://orcid.org/0000-0003-3305-2969","observed_orcids":["https://orcid.org/0000-0003-3305-2969"]},"institutions":[{"id":"https://openalex.org/I4210126183","display_name":"Universidad del Azuay","ror":"https://ror.org/037xrmj59","country_code":"EC","type":"education","lineage":["https://openalex.org/I4210126183"]}],"countries":["EC"],"is_corresponding":false,"raw_author_name":"David C Siddons","raw_affiliation_strings":["Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador"],"raw_orcid":"https://orcid.org/0000-0003-3305-2969","affiliations":[{"raw_affiliation_string":"Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador","institution_ids":["https://openalex.org/I4210126183"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070446821","display_name":"Rodrigo Caroca\u2010C\u00e1ceres","orcid":"https://orcid.org/0000-0002-1405-0872","observed_orcids":["https://orcid.org/0000-0002-1405-0872"]},"institutions":[{"id":"https://openalex.org/I4210126183","display_name":"Universidad del Azuay","ror":"https://ror.org/037xrmj59","country_code":"EC","type":"education","lineage":["https://openalex.org/I4210126183"]}],"countries":["EC"],"is_corresponding":true,"raw_author_name":"Rodrigo Caroca\u00a0C\u00e1ceres","raw_affiliation_strings":["Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador"],"raw_orcid":"https://orcid.org/0000-0002-1405-0872","affiliations":[{"raw_affiliation_string":"Universidad del Azuay, Laboratorio de Biotecnolog\u00eda , Av. 24 de Mayo 7-77, Cuenca, 010204 Azuay , Ecuador","institution_ids":["https://openalex.org/I4210126183"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5070446821"],"corresponding_institution_ids":["https://openalex.org/I4210126183"],"apc_list":{"value":3007,"currency":"GBP","value_usd":3844},"apc_paid":null,"fwci":0.9629,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.72641179,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":97},"biblio":{"volume":"135","issue":"8","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.6958000063896179,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.6958000063896179,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11253","display_name":"Nail Diseases and Treatments","score":0.06710000336170197,"subfield":{"id":"https://openalex.org/subfields/2708","display_name":"Dermatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11656","display_name":"Turtle Biology and Conservation","score":0.046300001442432404,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/galapagos-tortoise","display_name":"Gal\u00e1pagos tortoise","score":0.9490000009536743},{"id":"https://openalex.org/keywords/bacterial-diversity","display_name":"bacterial diversity","score":0.8970000147819519},{"id":"https://openalex.org/keywords/fungal-infection","display_name":"fungal infection","score":0.5400000214576721},{"id":"https://openalex.org/keywords/skin-lesions","display_name":"skin lesions","score":0.6899999976158142},{"id":"https://openalex.org/keywords/reptile-associated-bacteria","display_name":"reptile-associated bacteria","score":0.8330000042915344}],"concepts":[{"id":"https://openalex.org/C2779678872","wikidata":"https://www.wikidata.org/wiki/Q46360","display_name":"Tortoise","level":2,"score":0.8226926922798157},{"id":"https://openalex.org/C67206012","wikidata":"https://www.wikidata.org/wiki/Q666115","display_name":"Carapace","level":3,"score":0.816195011138916},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7660831809043884},{"id":"https://openalex.org/C2779678110","wikidata":"https://www.wikidata.org/wiki/Q764","display_name":"Fungus","level":2,"score":0.6705265045166016},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.4978320598602295},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.4715093672275543},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.43428462743759155},{"id":"https://openalex.org/C43144210","wikidata":"https://www.wikidata.org/wiki/Q121610","display_name":"Symbiosis","level":3,"score":0.41148173809051514},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.22691327333450317},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.21778836846351624},{"id":"https://openalex.org/C84766238","wikidata":"https://www.wikidata.org/wiki/Q25364","display_name":"Crustacean","level":2,"score":0.0913061797618866},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D014426","descriptor_name":"Turtles","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060105","descriptor_name":"Animal Shells","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1093/jambio/lxae202","doi":"https://doi.org/10.1093/jambio/lxae202","is_oa":false,"landing_page_url":"https://doi.org/10.1093/jambio/lxae202","pdf_url":null,"source":{"id":"https://openalex.org/S39794811","display_name":"Journal of Applied Microbiology","issn_l":"1364-5072","issn":["1364-5072","1365-2672"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","poland-70","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Applied Microbiology","raw_type":"journal-article"},{"id":"pmid:39108090","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39108090","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of applied microbiology","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2926743555","display_name":null,"funder_award_id":"2022-053","funder_id":"https://openalex.org/F4310122665","funder_display_name":"Universidad del Azuay"}],"funders":[{"id":"https://openalex.org/F4310122665","display_name":"Universidad del Azuay","ror":"https://ror.org/037xrmj59"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1590810813","https://openalex.org/W1909719803","https://openalex.org/W1945741998","https://openalex.org/W1949761491","https://openalex.org/W1983646891","https://openalex.org/W2006465310","https://openalex.org/W2026362149","https://openalex.org/W2029158331","https://openalex.org/W2037318348","https://openalex.org/W2065948165","https://openalex.org/W2098251202","https://openalex.org/W2113058321","https://openalex.org/W2116508189","https://openalex.org/W2118051462","https://openalex.org/W2119305839","https://openalex.org/W2119791321","https://openalex.org/W2129063323","https://openalex.org/W2143243137","https://openalex.org/W2158469693","https://openalex.org/W2203969896","https://openalex.org/W2257999313","https://openalex.org/W2302535889","https://openalex.org/W2309868298","https://openalex.org/W2424784766","https://openalex.org/W2469933387","https://openalex.org/W2512878215","https://openalex.org/W2582743722","https://openalex.org/W2736935890","https://openalex.org/W2793585044","https://openalex.org/W2802236540","https://openalex.org/W2901282808","https://openalex.org/W2945481664","https://openalex.org/W2946966924","https://openalex.org/W3003882680","https://openalex.org/W3007996344","https://openalex.org/W3013657405","https://openalex.org/W3021176157","https://openalex.org/W3042287376","https://openalex.org/W3116299899","https://openalex.org/W3136292736","https://openalex.org/W3138971169","https://openalex.org/W3164653576","https://openalex.org/W4200407491","https://openalex.org/W4280623728","https://openalex.org/W4288514360","https://openalex.org/W4387746128","https://openalex.org/W4388473690","https://openalex.org/W6791755791"],"related_works":["https://openalex.org/W4410922425","https://openalex.org/W2895817836","https://openalex.org/W6929592731","https://openalex.org/W7038042666","https://openalex.org/W3093704986","https://openalex.org/W4396872834","https://openalex.org/W2915762902","https://openalex.org/W2074948997","https://openalex.org/W7154321587","https://openalex.org/W2904615695"],"abstract_inverted_index":{"AIMS:":[0],"This":[1,135],"study":[2,136],"aimed":[3],"to":[4,50],"describe":[5],"the":[6,11,29,33,38,52,58,61,72,89,105,118,141,145,154,169,174,178],"bacterial":[7,54,73,142,175],"microbiome":[8,55,119],"associated":[9,56],"with":[10,57,79,86,122],"carapace":[12,146,179],"of":[13,16,32,96,107,140,144,156,168,180],"three":[14,148],"species":[15],"Galapagos":[17,149],"giant":[18,150],"tortoises":[19],"(Chelonoidis":[20],"porteri,":[21],"Chelonoidis":[22,25],"donfaustoi,":[23],"and":[24,27,71,80,123,126],"vandenburghi)":[26],"determine":[28],"potential":[30],"effect":[31],"whitish":[34],"lesions":[35,82],"caused":[36],"by":[37,69],"fungus":[39,170],"Aphanoascella":[40,171],"galapagosensis.":[41],"METHODS":[42],"AND":[43],"RESULTS:":[44],"We":[45,92],"used":[46],"Oxford":[47],"Nanopore's":[48],"MinION":[49],"evaluate":[51],"external":[53],"carapaces":[59,78,121],"from":[60],"aforementioned":[62],"species.":[63,133],"Taxonomic":[64],"assignment":[65],"was":[66],"carried":[67],"out":[68],"Bugseq":[70],"communities":[74],"were":[75,99],"compared":[76],"between":[77,120],"without":[81,124],"using":[83],"a":[84,114,138,157,165],"NMDS":[85],"Bray-Curtis":[87],"as":[88],"dissimilarity":[90],"index.":[91],"found":[93],"four":[94],"genera":[95],"bacteria":[97],"that":[98],"ubiquitous":[100],"throughout":[101],"all":[102],"individuals,":[103],"suggesting":[104],"presence":[106,155],"shared":[108],"taxa.":[109],"The":[110],"results":[111],"also":[112],"displayed":[113],"significant":[115,166],"difference":[116],"in":[117],"lesions,":[125],"for":[127],"species-carapace":[128],"interaction,":[129],"but":[130],"not":[131],"among":[132],"CONCLUSIONS:":[134],"establishes":[137],"baseline":[139],"diversity":[143],"within":[147],"tortoise":[151],"species,":[152],"showcasing":[153],"distinctive":[158],"microbial":[159],"community.":[160],"Furthermore,":[161],"our":[162],"findings":[163],"suggest":[164],"influence":[167],"galapagosensis":[172],"on":[173],"populations":[176],"inhabiting":[177],"these":[181],"reptiles.":[182]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2024-08-09T00:00:00"}
