{"id":"https://openalex.org/W4401396308","doi":"https://doi.org/10.1002/2211-5463.13868","title":"Complete pipeline for Oxford Nanopore Technology amplicon sequencing ( ONT \u2010 AmpSeq ): from pre\u2010processing to creating an operational taxonomic unit table","display_name":"Complete pipeline for Oxford Nanopore Technology amplicon sequencing ( ONT \u2010 AmpSeq ): from pre\u2010processing to creating an operational taxonomic unit table","publication_year":2024,"publication_date":"2024-08-07","ids":{"openalex":"https://openalex.org/W4401396308","doi":"https://doi.org/10.1002/2211-5463.13868","pmid":"https://pubmed.ncbi.nlm.nih.gov/39109544","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/11532972"},"language":"en","primary_location":{"id":"doi:10.1002/2211-5463.13868","doi":"https://doi.org/10.1002/2211-5463.13868","is_oa":true,"landing_page_url":"https://doi.org/10.1002/2211-5463.13868","pdf_url":null,"source":{"id":"https://openalex.org/S2898225119","display_name":"FEBS Open Bio","issn_l":"2211-5463","issn":["2211-5463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-70","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"FEBS Open Bio","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1002/2211-5463.13868","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106348519","display_name":"Patrick Skov Schacksen","orcid":"https://orcid.org/0000-0002-3850-4971","observed_orcids":["https://orcid.org/0000-0002-3850-4971"]},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Patrick Skov Schacksen","raw_affiliation_strings":["Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark"],"raw_orcid":"https://orcid.org/0000-0002-3850-4971","affiliations":[{"raw_affiliation_string":"Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085607146","display_name":"Stine Karstenskov \u00d8stergaard","orcid":"https://orcid.org/0009-0001-1092-0826","observed_orcids":["https://orcid.org/0009-0001-1092-0826"]},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Stine Karstenskov \u00d8stergaard","raw_affiliation_strings":["Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark"],"raw_orcid":"https://orcid.org/0009-0001-1092-0826","affiliations":[{"raw_affiliation_string":"Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094047838","display_name":"Mathias Helmer Eskildsen","orcid":"https://orcid.org/0009-0000-1503-3399","observed_orcids":["https://orcid.org/0009-0000-1503-3399"]},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Mathias Helmer Eskildsen","raw_affiliation_strings":["Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark","institution_ids":["https://openalex.org/I891191580"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047257173","display_name":"Jeppe Lund Nielsen","orcid":"https://orcid.org/0000-0002-8747-6938","observed_orcids":["https://orcid.org/0000-0002-8747-6938","https://orcid.org/0000-0002-6402-1877"]},"institutions":[{"id":"https://openalex.org/I891191580","display_name":"Aalborg University","ror":"https://ror.org/04m5j1k67","country_code":"DK","type":"education","lineage":["https://openalex.org/I891191580"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jeppe Lund Nielsen","raw_affiliation_strings":["Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark"],"raw_orcid":"https://orcid.org/0000-0002-8747-6938","affiliations":[{"raw_affiliation_string":"Department of Chemistry and Bioscience, Aalborg University, Aalborg East, Denmark","institution_ids":["https://openalex.org/I891191580"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5106348519"],"corresponding_institution_ids":["https://openalex.org/I891191580"],"apc_list":{"value":2010,"currency":"USD","value_usd":2010},"apc_paid":{"value":2010,"currency":"USD","value_usd":2010},"fwci":2.5322,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.9148119,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"14","issue":"11","first_page":"1779","last_page":"1787"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9506999850273132,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.030700000002980232,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.008999999612569809,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/oxford-nanopore-sequencing","display_name":"Oxford Nanopore sequencing","score":0.8450000286102295},{"id":"https://openalex.org/keywords/amplicon-sequencing","display_name":"amplicon sequencing","score":0.972000002861023},{"id":"https://openalex.org/keywords/bioinformatics-pipeline","display_name":"bioinformatics pipeline","score":0.7300000190734863},{"id":"https://openalex.org/keywords/operational-taxonomic-units","display_name":"operational taxonomic units","score":0.9290000200271606},{"id":"https://openalex.org/keywords/microbial-community-composition","display_name":"microbial community composition","score":0.8199999928474426},{"id":"https://openalex.org/keywords/taxonomic-classification","display_name":"taxonomic classification","score":0.6919999718666077},{"id":"https://openalex.org/keywords/quality-filtering","display_name":"quality filtering","score":0.746999979019165},{"id":"https://openalex.org/keywords/clustering","display_name":"clustering","score":0.47600001096725464},{"id":"https://openalex.org/keywords/mock-communities","display_name":"mock communities","score":0.6230000257492065}],"concepts":[{"id":"https://openalex.org/C8185291","wikidata":"https://www.wikidata.org/wiki/Q2844457","display_name":"Amplicon","level":4,"score":0.7814508080482483},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.7687708139419556},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7072333097457886},{"id":"https://openalex.org/C45235069","wikidata":"https://www.wikidata.org/wiki/Q278425","display_name":"Table (database)","level":2,"score":0.6513576507568359},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4412650167942047},{"id":"https://openalex.org/C141795571","wikidata":"https://www.wikidata.org/wiki/Q580942","display_name":"Nanopore","level":2,"score":0.41488680243492126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37550562620162964},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.26447930932044983},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2558296024799347},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19139748811721802},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.18912792205810547},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.17685657739639282},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10346314311027527},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08421328663825989},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.05885738134384155},{"id":"https://openalex.org/C49105822","wikidata":"https://www.wikidata.org/wiki/Q176996","display_name":"Polymerase chain reaction","level":3,"score":0.057559072971343994}],"mesh":[{"descriptor_ui":"D000081414","descriptor_name":"Nanopore Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058608","descriptor_name":"Nanopores","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1002/2211-5463.13868","doi":"https://doi.org/10.1002/2211-5463.13868","is_oa":true,"landing_page_url":"https://doi.org/10.1002/2211-5463.13868","pdf_url":null,"source":{"id":"https://openalex.org/S2898225119","display_name":"FEBS Open Bio","issn_l":"2211-5463","issn":["2211-5463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-70","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"FEBS Open Bio","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11532972","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11532972","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11532972/pdf/FEB4-14-1779.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"FEBS Open Bio","raw_type":"Text"},{"id":"pmid:39109544","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39109544","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"FEBS open bio","raw_type":"Journal Article"},{"id":"pmh:oai:pure.atira.dk:openaire/0bbcdb65-040a-43a5-9945-6984a72b022f","doi":null,"is_oa":true,"landing_page_url":"https://vbn.aau.dk/da/publications/0bbcdb65-040a-43a5-9945-6984a72b022f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401731","display_name":"VBN Forskningsportal (Aalborg Universitet)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I891191580","host_organization_name":"Aalborg University","host_organization_lineage":["https://openalex.org/I891191580"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Schacksen, P S, \u00d8stergaard, S K, Eskildsen, M H & Nielsen, J L 2024, 'Complete pipeline for Oxford Nanopore Technology amplicon sequencing (ONT\u2010AmpSeq) : from pre\u2010processing to creating an operational taxonomic unit table', FEBS open bio, vol. 14, no. 11, pp. 1779-1787. https://doi.org/10.1002/2211-5463.13868","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:8e5767d19c964d31986ecb4c71ebd633","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/8e5767d19c964d31986ecb4c71ebd633","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"FEBS Open Bio, Vol 14, Iss 11, Pp 1779-1787 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1002/2211-5463.13868","doi":"https://doi.org/10.1002/2211-5463.13868","is_oa":true,"landing_page_url":"https://doi.org/10.1002/2211-5463.13868","pdf_url":null,"source":{"id":"https://openalex.org/S2898225119","display_name":"FEBS Open Bio","issn_l":"2211-5463","issn":["2211-5463"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-70","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"FEBS Open Bio","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2420360511","display_name":null,"funder_award_id":"NNF21SA0073688","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G6013804702","display_name":null,"funder_award_id":"NNFSA210073688","funder_id":"https://openalex.org/F4320325957","funder_display_name":"Novo Nordisk Fonden"},{"id":"https://openalex.org/G6898903784","display_name":null,"funder_award_id":"9041\u201000367B","funder_id":"https://openalex.org/F4320310484","funder_display_name":"Teknologi og Produktion, Det Frie Forskningsr\u00e5d"},{"id":"https://openalex.org/G8643603255","display_name":null,"funder_award_id":"33113\u2010B\u201023\u2010190","funder_id":"https://openalex.org/F4320337808","funder_display_name":"European Maritime and Fisheries Fund"}],"funders":[{"id":"https://openalex.org/F4320310484","display_name":"Teknologi og Produktion, Det Frie Forskningsr\u00e5d","ror":"https://ror.org/03ge1nb22"},{"id":"https://openalex.org/F4320322007","display_name":"Ministry of Environment","ror":"https://ror.org/04xmt0833"},{"id":"https://openalex.org/F4320325957","display_name":"Novo Nordisk Fonden","ror":"https://ror.org/04txyc737"},{"id":"https://openalex.org/F4320326785","display_name":"Milj\u00f8- og F\u00f8devareministeriet","ror":"https://ror.org/05sdke129"},{"id":"https://openalex.org/F4320337808","display_name":"European Maritime and Fisheries Fund","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4401396308.pdf","grobid_xml":"https://content.openalex.org/works/W4401396308.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1596936080","https://openalex.org/W1659313070","https://openalex.org/W1699172361","https://openalex.org/W2036897871","https://openalex.org/W2056279562","https://openalex.org/W2072735086","https://openalex.org/W2072812562","https://openalex.org/W2096525273","https://openalex.org/W2242464395","https://openalex.org/W2259815689","https://openalex.org/W2513506562","https://openalex.org/W2562683361","https://openalex.org/W2575750030","https://openalex.org/W2789843538","https://openalex.org/W2802266517","https://openalex.org/W2950891420","https://openalex.org/W2951278111","https://openalex.org/W3121089444","https://openalex.org/W3122109253","https://openalex.org/W3146423745","https://openalex.org/W3207135252","https://openalex.org/W3208186059","https://openalex.org/W4205440119","https://openalex.org/W4214838801","https://openalex.org/W4289274885","https://openalex.org/W4321097795","https://openalex.org/W4321116997","https://openalex.org/W4376256177","https://openalex.org/W4385068503","https://openalex.org/W4400006735"],"related_works":["https://openalex.org/W4414111344","https://openalex.org/W4409885015","https://openalex.org/W2596926044","https://openalex.org/W7160122283","https://openalex.org/W4407047676","https://openalex.org/W7162416785","https://openalex.org/W3107304363","https://openalex.org/W2928143999","https://openalex.org/W2110916511","https://openalex.org/W7097386364"],"abstract_inverted_index":{"Amplicon":[0],"sequencing":[1,42,66,178],"has":[2],"long":[3],"served":[4],"as":[5],"a":[6,20,35,98,116,171],"robust":[7],"method":[8],"for":[9,39,174,196],"characterising":[10],"microbial":[11,142,166,184],"communities,":[12],"and":[13,25,89,108,115,156,182],"despite":[14],"inherent":[15],"resolution":[16],"limitations,":[17],"it":[18],"remains":[19],"preferred":[21],"technique,":[22],"offering":[23,138],"cost\u2010":[24],"time\u2010effective":[26],"insights":[27,140],"into":[28,141],"bacterial":[29],"compositions.":[30],"Here,":[31],"we":[32,146],"introduce":[33],"ONT\u2010AmpSeq,":[34],"user\u2010friendly":[36],"pipeline":[37,52,79],"designed":[38],"processing":[40],"amplicon":[41,136,177],"data":[43,114],"generated":[44],"from":[45,64],"Oxford":[46],"Nanopore":[47],"Technology":[48],"(ONT)":[49],"devices.":[50],"Our":[51,125],"enables":[53],"efficient":[54],"creation":[55],"of":[56,101,130,150,159],"taxonomically":[57],"annotated":[58],"operational":[59],"taxonomic":[60,90,154,160],"unit":[61],"(OTU)":[62],"tables":[63],"ONT":[65,135,176],"data,":[67,137,179,192],"with":[68,105,190],"the":[69,75,128,148,157,164],"flexibility":[70],"to":[71,132],"multiplex":[72],"amplicons":[73],"on":[74,153,163],"same":[76],"barcode.":[77],"The":[78,187],"encompasses":[80],"six":[81],"main":[82],"steps\u2014statistics,":[83],"quality":[84],"filtering,":[85],"alignment,":[86],"clustering,":[87],"polishing,":[88],"classification\u2014integrating":[91],"various":[92],"state\u2010of\u2010the\u2010art":[93],"software":[94],"tools.":[95],"We":[96],"provide":[97],"detailed":[99],"description":[100],"each":[102],"step,":[103],"along":[104,189],"performance":[106],"tests":[107],"robustness":[109],"evaluations":[110],"using":[111],"both":[112],"test":[113,191],"ZymoBIOMICS":[117],"\u00ae":[118],"Microbial":[119],"Community":[120],"Standard":[121],"mock":[122],"community":[123,143,185],"dataset.":[124],"results":[126],"demonstrate":[127],"ability":[129],"ONT\u2010AmpSeq":[131,169],"effectively":[133],"process":[134],"valuable":[139],"composition.":[144,167],"Additionally,":[145],"discuss":[147],"influence":[149],"polishing":[151],"tools":[152],"insight":[155],"impact":[158],"annotation":[161],"methods":[162],"derived":[165],"Overall,":[168],"represents":[170],"comprehensive":[172],"solution":[173],"analysing":[175],"facilitating":[180],"streamlined":[181],"reliable":[183],"analysis.":[186],"pipeline,":[188],"is":[193],"freely":[194],"available":[195],"public":[197],"use.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":4}],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2024-08-08T00:00:00"}
