{"id":"https://openalex.org/W4400229060","doi":"https://doi.org/10.1016/j.bbrep.2024.101772","title":"Development of a formula for scoring competence of bovine embryos to sustain pregnancy","display_name":"Development of a formula for scoring competence of bovine embryos to sustain pregnancy","publication_year":2024,"publication_date":"2024-07-02","ids":{"openalex":"https://openalex.org/W4400229060","doi":"https://doi.org/10.1016/j.bbrep.2024.101772","pmid":"https://pubmed.ncbi.nlm.nih.gov/39050012","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/11268127"},"language":"en","primary_location":{"id":"doi:10.1016/j.bbrep.2024.101772","doi":"https://doi.org/10.1016/j.bbrep.2024.101772","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.bbrep.2024.101772","pdf_url":null,"source":{"id":"https://openalex.org/S2764640729","display_name":"Biochemistry and Biophysics Reports","issn_l":"2405-5808","issn":["2405-5808"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","ki-jl-1","norway-1","poland-40"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and Biophysics Reports","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.bbrep.2024.101772","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046365910","display_name":"Mar\u00eda Bel\u00e9n Rabaglino","orcid":"https://orcid.org/0000-0002-0099-045X","observed_orcids":["https://orcid.org/0000-0002-0099-045X"]},"institutions":[{"id":"https://openalex.org/I193662353","display_name":"Utrecht University","ror":"https://ror.org/04pp8hn57","country_code":"NL","type":"education","lineage":["https://openalex.org/I193662353"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Maria Belen Rabaglino","raw_affiliation_strings":["Department of Population Health Science, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, the Netherlands"],"raw_orcid":"https://orcid.org/0000-0002-0099-045X","affiliations":[{"raw_affiliation_string":"Department of Population Health Science, Faculty of Veterinary Medicine, Utrecht University, 3584 CL, Utrecht, the Netherlands","institution_ids":["https://openalex.org/I193662353"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028606515","display_name":"Peter James Hansen","orcid":"https://orcid.org/0000-0003-3061-9333","observed_orcids":["https://orcid.org/0000-0003-3061-9333"]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter J. Hansen","raw_affiliation_strings":["Dept. of Animal Sciences, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Animal Sciences, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5046365910"],"corresponding_institution_ids":["https://openalex.org/I193662353"],"apc_list":{"value":2540,"currency":"USD","value_usd":2540},"apc_paid":{"value":2540,"currency":"USD","value_usd":2540},"fwci":4.4063,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.94783866,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"39","issue":null,"first_page":"101772","last_page":"101772"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10584","display_name":"Reproductive Physiology in Livestock","score":0.8676999807357788,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10584","display_name":"Reproductive Physiology in Livestock","score":0.8676999807357788,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10364","display_name":"Reproductive Biology and Fertility","score":0.08709999918937683,"subfield":{"id":"https://openalex.org/subfields/2743","display_name":"Reproductive Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12929","display_name":"Animal Genetics and Reproduction","score":0.026799999177455902,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bovine-embryos","display_name":"bovine embryos","score":0.8489999771118164},{"id":"https://openalex.org/keywords/pregnancy-establishment","display_name":"pregnancy establishment","score":0.7820000052452087},{"id":"https://openalex.org/keywords/embryo-transfer","display_name":"embryo transfer","score":0.8370000123977661},{"id":"https://openalex.org/keywords/miscarriage","display_name":"miscarriage","score":0.8889999985694885},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.44999998807907104},{"id":"https://openalex.org/keywords/gene-expression-signatures","display_name":"gene expression signatures","score":0.5649999976158142},{"id":"https://openalex.org/keywords/cattle-reproduction","display_name":"cattle reproduction","score":0.8169999718666077}],"concepts":[{"id":"https://openalex.org/C196843134","wikidata":"https://www.wikidata.org/wiki/Q33196","display_name":"Embryo","level":2,"score":0.7471902966499329},{"id":"https://openalex.org/C100521375","wikidata":"https://www.wikidata.org/wiki/Q2015382","display_name":"Competence (human resources)","level":2,"score":0.6413106918334961},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5760596990585327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5313081741333008},{"id":"https://openalex.org/C160099875","wikidata":"https://www.wikidata.org/wiki/Q237118","display_name":"Embryo transfer","level":3,"score":0.5182111859321594},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5099102258682251},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4703650176525116},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.44766944646835327},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44451838731765747},{"id":"https://openalex.org/C145103041","wikidata":"https://www.wikidata.org/wiki/Q1151519","display_name":"Embryonic stem cell","level":3,"score":0.4408773183822632},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.4045802652835846},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3994327485561371},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.33480116724967957},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.32533568143844604},{"id":"https://openalex.org/C16685009","wikidata":"https://www.wikidata.org/wiki/Q335057","display_name":"Andrology","level":1,"score":0.32255080342292786},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14604321122169495},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.09818345308303833},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1016/j.bbrep.2024.101772","doi":"https://doi.org/10.1016/j.bbrep.2024.101772","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.bbrep.2024.101772","pdf_url":null,"source":{"id":"https://openalex.org/S2764640729","display_name":"Biochemistry and Biophysics Reports","issn_l":"2405-5808","issn":["2405-5808"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","ki-jl-1","norway-1","poland-40"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and Biophysics Reports","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11268127","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11268127","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11268127/pdf/main.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochem Biophys Rep","raw_type":"Text"},{"id":"pmid:39050012","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39050012","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and biophysics reports","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:d71fd7ae206f441696f8ca14d2f7f90f","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/d71fd7ae206f441696f8ca14d2f7f90f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biochemistry and Biophysics Reports, Vol 39, Iss , Pp 101772- (2024)","raw_type":"article"},{"id":"pmh:oai:dspace.library.uu.nl:1874/472087","doi":null,"is_oa":true,"landing_page_url":"https://dspace.library.uu.nl/handle/1874/472087","pdf_url":null,"source":{"id":"https://openalex.org/S4306401649","display_name":"Utrecht University Repository (Utrecht University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I193662353","host_organization_name":"Utrecht University","host_organization_lineage":["https://openalex.org/I193662353"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1016/j.bbrep.2024.101772","doi":"https://doi.org/10.1016/j.bbrep.2024.101772","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.bbrep.2024.101772","pdf_url":null,"source":{"id":"https://openalex.org/S2764640729","display_name":"Biochemistry and Biophysics Reports","issn_l":"2405-5808","issn":["2405-5808"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-d","jufo-1","ki-jl-1","norway-1","poland-40"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biochemistry and Biophysics Reports","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400229060.pdf","grobid_xml":"https://content.openalex.org/works/W4400229060.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1831050183","https://openalex.org/W2084793610","https://openalex.org/W2154837068","https://openalex.org/W2475326882","https://openalex.org/W2790798210","https://openalex.org/W2938708137","https://openalex.org/W2947960727","https://openalex.org/W2980590951","https://openalex.org/W2991489302","https://openalex.org/W3019408181","https://openalex.org/W3045223849","https://openalex.org/W3095471805","https://openalex.org/W3159098484","https://openalex.org/W3165308453","https://openalex.org/W3198951512","https://openalex.org/W4319461061","https://openalex.org/W4385649119","https://openalex.org/W4385695554","https://openalex.org/W4385695660","https://openalex.org/W4393965964"],"related_works":["https://openalex.org/W4319461061","https://openalex.org/W1988322245","https://openalex.org/W1975484662","https://openalex.org/W4405315014","https://openalex.org/W7219997086","https://openalex.org/W7112899838","https://openalex.org/W4379053584","https://openalex.org/W2187733857","https://openalex.org/W1967276073","https://openalex.org/W2895720667"],"abstract_inverted_index":{"Embryo":[0],"transfer":[1,21],"in":[2,76,161,180],"cattle":[3],"and":[4,174],"other":[5],"species":[6],"is":[7,22],"a":[8,24,37,109,116,145,150],"key":[9],"reproductive":[10],"technology":[11],"to":[12,27,39,90,124,132,144],"improve":[13],"genetic":[14],"merit.":[15],"However,":[16],"pregnancy":[17,71],"loss":[18],"after":[19],"embryo":[20,97,156],"still":[23],"major":[25],"barrier":[26],"optimal":[28],"utilization":[29],"of":[30,36,51,95,135,141],"the":[31,34,49,56,112,121,133,142,171],"technology.":[32],"Furthermore,":[33],"lack":[35],"method":[38],"objectively":[40],"quantify":[41],"embryonic":[42,127],"competence":[43,50,98,128],"hinders":[44],"investigations":[45],"aimed":[46],"at":[47],"improving":[48],"an":[52,62,126,166],"embryo.":[53],"Based":[54],"on":[55,120],"knowledge":[57],"that":[58,66,157],"bovine":[59],"embryos":[60],"have":[61,82],"inherent":[63],"molecular":[64],"signature":[65],"determines":[67],"their":[68],"ability":[69],"for":[70,99,111,154],"establishment":[72],"which":[73],"can":[74,158,177],"result":[75],"distinct":[77],"gene":[78,146],"expression":[79,134,147],"profiles,":[80],"we":[81,107],"previously":[83],"integrated":[84],"transcriptomic":[85],"data":[86],"from":[87],"independent":[88],"experiments":[89],"identify":[91],"eight":[92,137],"genes":[93],"capable":[94],"predicting":[96],"survival":[100],"with":[101,170],"high":[102],"accuracy.":[103],"In":[104],"this":[105],"study,":[106],"developed":[108],"function":[110,143],"R":[113,172],"software":[114],"containing":[115],"mathematical":[117],"formula":[118],"based":[119],"model":[122],"coefficients":[123],"yield":[125],"index":[129],"(ECI)":[130],"according":[131],"those":[136],"critical":[138],"genes.":[139],"Application":[140],"dataset":[148],"generates":[149],"quantitative":[151],"ECI":[152],"value":[153],"each":[155],"be":[159,178],"employed":[160],"statistical":[162],"analyses":[163],"when":[164],"performing":[165],"experiment.":[167],"The":[168],"folder":[169],"project":[173],"required":[175],"datasets":[176],"found":[179],"https://zenodo.org/records/12515587.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":2}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2024-07-03T00:00:00"}
