{"id":"https://openalex.org/W4399797352","doi":"https://doi.org/10.1016/s2666-5247(24)00065-x","title":"Implementation of the WHO Tricycle protocol for surveillance of extended-spectrum \u03b2-lactamase producing Escherichia coli in humans, chickens, and the environment in Madagascar: a prospective genomic epidemiology study","display_name":"Implementation of the WHO Tricycle protocol for surveillance of extended-spectrum \u03b2-lactamase producing Escherichia coli in humans, chickens, and the environment in Madagascar: a prospective genomic epidemiology study","publication_year":2024,"publication_date":"2024-06-19","ids":{"openalex":"https://openalex.org/W4399797352","doi":"https://doi.org/10.1016/s2666-5247(24)00065-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/38908389"},"language":"en","primary_location":{"id":"doi:10.1016/s2666-5247(24)00065-x","doi":"https://doi.org/10.1016/s2666-5247(24)00065-x","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s2666-5247(24)00065-x","pdf_url":"http://www.thelancet.com/article/S266652472400065X/pdf","source":{"id":"https://openalex.org/S4210190705","display_name":"The Lancet Microbe","issn_l":"2666-5247","issn":["2666-5247"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-1","oarl","poland-20"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet Microbe","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://www.thelancet.com/article/S266652472400065X/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043584430","display_name":"Milen Milenkov","orcid":"https://orcid.org/0009-0008-2793-0626","observed_orcids":["https://orcid.org/0009-0008-2793-0626"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210109013","display_name":"Fondation M\u00e9rieux","ror":"https://ror.org/01m6mfc08","country_code":"FR","type":"other","lineage":["https://openalex.org/I1284886586","https://openalex.org/I4210109013"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Milen Milenkov","raw_affiliation_strings":["Fondation M\u00e9rieux, Lyon, France; Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","Fondation M\u00e9rieux, Lyon, France","Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondation M\u00e9rieux, Lyon, France; Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210109013","https://openalex.org/I4387156044"]},{"raw_affiliation_string":"Fondation M\u00e9rieux, Lyon, France","institution_ids":["https://openalex.org/I4210109013"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003504165","display_name":"Caroline Proux","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Caroline Proux","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031004422","display_name":"Tiavina Rasolofoarison","orcid":"https://orcid.org/0009-0003-5021-9780","observed_orcids":["https://orcid.org/0009-0003-5021-9780"]},"institutions":[{"id":"https://openalex.org/I137724175","display_name":"University of Antananarivo","ror":"https://ror.org/02w4gwv87","country_code":"MG","type":"education","lineage":["https://openalex.org/I137724175"]}],"countries":["MG"],"is_corresponding":false,"raw_author_name":"Tiavina Lalaina Rasolofoarison","raw_affiliation_strings":["Centre d'Infectiologie Charles M\u00e9rieux, University of Antananarivo, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre d'Infectiologie Charles M\u00e9rieux, University of Antananarivo, Antananarivo, Madagascar","institution_ids":["https://openalex.org/I137724175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017967896","display_name":"Fetra Angelot Rakotomalala","orcid":"https://orcid.org/0000-0002-0718-1604","observed_orcids":["https://orcid.org/0000-0002-0718-1604"]},"institutions":[{"id":"https://openalex.org/I137724175","display_name":"University of Antananarivo","ror":"https://ror.org/02w4gwv87","country_code":"MG","type":"education","lineage":["https://openalex.org/I137724175"]}],"countries":["MG"],"is_corresponding":false,"raw_author_name":"Fetra Angelot Rakotomalala","raw_affiliation_strings":["Centre d'Infectiologie Charles M\u00e9rieux, University of Antananarivo, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre d'Infectiologie Charles M\u00e9rieux, University of Antananarivo, Antananarivo, Madagascar","institution_ids":["https://openalex.org/I137724175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084317554","display_name":"Sa\u00efda Rasoanandrasana","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Saida Rasoanandrasana","raw_affiliation_strings":["Laboratoire de Bact\u00e9riologie, CHU Joseph Raseta Befelatanana, RESAMAD Network, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bact\u00e9riologie, CHU Joseph Raseta Befelatanana, RESAMAD Network, Antananarivo, Madagascar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003390357","display_name":"Vonintsoa Lalaina Rahajamanana","orcid":"https://orcid.org/0000-0002-0802-8054","observed_orcids":["https://orcid.org/0000-0002-0802-8054"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vonintsoa Lalaina Rahajamanana","raw_affiliation_strings":["Laboratoire de Bact\u00e9riologie, CHU M\u00e8re-Enfant Tsaralalana, RESAMAD Network, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bact\u00e9riologie, CHU M\u00e8re-Enfant Tsaralalana, RESAMAD Network, Antananarivo, Madagascar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049798123","display_name":"Christian Rafalimanana","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christian Rafalimanana","raw_affiliation_strings":["Laboratoire de Bact\u00e9riologie, CHU Joseph Ravoahangy Andrianavalona, RESAMAD Network, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Bact\u00e9riologie, CHU Joseph Ravoahangy Andrianavalona, RESAMAD Network, Antananarivo, Madagascar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022843047","display_name":"Zakasoa Mbololona Ravaoarisaina","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zakasoa Ravaoarisaina","raw_affiliation_strings":["CHU M\u00e8re Enfant Ambohimiandra, RESAMAD Network, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CHU M\u00e8re Enfant Ambohimiandra, RESAMAD Network, Antananarivo, Madagascar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022216015","display_name":"Ilo Tsimok\u2019Haja Ramahatafandry","orcid":"https://orcid.org/0009-0007-3047-2016","observed_orcids":["https://orcid.org/0009-0007-3047-2016"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ilo Tsimok\u2019Haja Ramahatafandry","raw_affiliation_strings":["Direction des Services V\u00e9t\u00e9rinaires, Minist\u00e8re de l'Agriculture et de l'Elevage, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Direction des Services V\u00e9t\u00e9rinaires, Minist\u00e8re de l'Agriculture et de l'Elevage, Antananarivo, Madagascar","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028263194","display_name":"Emilie Westeel","orcid":"https://orcid.org/0000-0001-7207-7419","observed_orcids":["https://orcid.org/0000-0001-7207-7419"]},"institutions":[{"id":"https://openalex.org/I4210109013","display_name":"Fondation M\u00e9rieux","ror":"https://ror.org/01m6mfc08","country_code":"FR","type":"other","lineage":["https://openalex.org/I1284886586","https://openalex.org/I4210109013"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emilie Westeel","raw_affiliation_strings":["Fondation M\u00e9rieux, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondation M\u00e9rieux, Lyon, France","institution_ids":["https://openalex.org/I4210109013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032514878","display_name":"Marie Petitjean","orcid":"https://orcid.org/0000-0003-0397-2051","observed_orcids":["https://orcid.org/0000-0003-0397-2051"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie Petitjean","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048425211","display_name":"Valentine Berti","orcid":"https://orcid.org/0009-0004-7447-1136","observed_orcids":["https://orcid.org/0009-0004-7447-1136"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210145170","display_name":"H\u00f4pital Bichat-Claude-Bernard","ror":"https://ror.org/03fdnmv92","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210145170"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Valentine Berti","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France","Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France","Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210097159","https://openalex.org/I4210145170","https://openalex.org/I4387156044"]},{"raw_affiliation_string":"Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210097159","https://openalex.org/I4210145170"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083995202","display_name":"Julie Marin","orcid":"https://orcid.org/0000-0002-7160-9302","observed_orcids":["https://orcid.org/0000-0002-7160-9302"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210091279","display_name":"Universit\u00e9 Sorbonne Paris Nord","ror":"https://ror.org/0199hds37","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210091279"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie Marin","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Universit\u00e9 Sorbonne Paris Nord, IAME, INSERM UMR 1137, Bobigny, France","Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","Universit\u00e9 Sorbonne Paris Nord, IAME, INSERM UMR 1137, Bobigny, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Universit\u00e9 Sorbonne Paris Nord, IAME, INSERM UMR 1137, Bobigny, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210091279","https://openalex.org/I4387156044"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]},{"raw_affiliation_string":"Universit\u00e9 Sorbonne Paris Nord, IAME, INSERM UMR 1137, Bobigny, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I4210091279","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043223770","display_name":"Jimmy Mullaert","orcid":"https://orcid.org/0000-0002-2563-9033","observed_orcids":["https://orcid.org/0000-0002-2563-9033"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jimmy Mullaert","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074898049","display_name":"Lien Han","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lien Han","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046289689","display_name":"Olivier Clermont","orcid":"https://orcid.org/0000-0003-3961-1397","observed_orcids":["https://orcid.org/0000-0003-3961-1397"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Clermont","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107383558","display_name":"Laurent Raskine","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210109013","display_name":"Fondation M\u00e9rieux","ror":"https://ror.org/01m6mfc08","country_code":"FR","type":"other","lineage":["https://openalex.org/I1284886586","https://openalex.org/I4210109013"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent Raskine","raw_affiliation_strings":["Fondation M\u00e9rieux, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondation M\u00e9rieux, Lyon, France","institution_ids":["https://openalex.org/I4210109013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043278467","display_name":"Hubert P. Endtz","orcid":"https://orcid.org/0000-0002-1018-0864","observed_orcids":["https://orcid.org/0000-0002-1018-0864"]},"institutions":[{"id":"https://openalex.org/I2801952686","display_name":"Erasmus MC","ror":"https://ror.org/018906e22","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I2801952686"]},{"id":"https://openalex.org/I4210109013","display_name":"Fondation M\u00e9rieux","ror":"https://ror.org/01m6mfc08","country_code":"FR","type":"other","lineage":["https://openalex.org/I1284886586","https://openalex.org/I4210109013"]}],"countries":["FR","NL"],"is_corresponding":false,"raw_author_name":"Hubert Endtz","raw_affiliation_strings":["Fondation M\u00e9rieux, Lyon, France; Department of Medical Microbiology and Infectious Diseases, Erasmus MC, Rotterdam, Netherlands","Department of Medical Microbiology and Infectious Diseases, Erasmus MC, Rotterdam, Netherlands","Fondation M\u00e9rieux, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondation M\u00e9rieux, Lyon, France; Department of Medical Microbiology and Infectious Diseases, Erasmus MC, Rotterdam, Netherlands","institution_ids":["https://openalex.org/I2801952686","https://openalex.org/I4210109013"]},{"raw_affiliation_string":"Department of Medical Microbiology and Infectious Diseases, Erasmus MC, Rotterdam, Netherlands","institution_ids":["https://openalex.org/I2801952686"]},{"raw_affiliation_string":"Fondation M\u00e9rieux, Lyon, France","institution_ids":["https://openalex.org/I4210109013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111536633","display_name":"Antoine Andremont","orcid":"https://orcid.org/0000-0002-9321-2074","observed_orcids":["https://orcid.org/0000-0002-9321-2074"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Antoine Andremont","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079264989","display_name":"\u00c9rick Denamur","orcid":"https://orcid.org/0000-0002-7860-1717","observed_orcids":["https://orcid.org/0000-0002-7860-1717"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210145170","display_name":"H\u00f4pital Bichat-Claude-Bernard","ror":"https://ror.org/03fdnmv92","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210145170"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Erick Denamur","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Laboratoire de G\u00e9n\u00e9tique Mol\u00e9culaire, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 de Paris, Paris, France","Laboratoire de G\u00e9n\u00e9tique Mol\u00e9culaire, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 de Paris, Paris, France","Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Laboratoire de G\u00e9n\u00e9tique Mol\u00e9culaire, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 de Paris, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210097159","https://openalex.org/I4210145170","https://openalex.org/I4387156044"]},{"raw_affiliation_string":"Laboratoire de G\u00e9n\u00e9tique Mol\u00e9culaire, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 de Paris, Paris, France","institution_ids":["https://openalex.org/I4210097159","https://openalex.org/I4210145170"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035599547","display_name":"Florence Komurian-Pradel","orcid":"https://orcid.org/0000-0002-1023-0796","observed_orcids":["https://orcid.org/0000-0002-1023-0796"]},"institutions":[{"id":"https://openalex.org/I4210109013","display_name":"Fondation M\u00e9rieux","ror":"https://ror.org/01m6mfc08","country_code":"FR","type":"other","lineage":["https://openalex.org/I1284886586","https://openalex.org/I4210109013"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Florence Komurian-Pradel","raw_affiliation_strings":["Fondation M\u00e9rieux, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondation M\u00e9rieux, Lyon, France","institution_ids":["https://openalex.org/I4210109013"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054671327","display_name":"Luc Herv\u00e9 Samison","orcid":"https://orcid.org/0000-0003-0776-1438","observed_orcids":["https://orcid.org/0000-0003-0776-1438"]},"institutions":[{"id":"https://openalex.org/I137724175","display_name":"University of Antananarivo","ror":"https://ror.org/02w4gwv87","country_code":"MG","type":"education","lineage":["https://openalex.org/I137724175"]}],"countries":["MG"],"is_corresponding":false,"raw_author_name":"Luc Herv\u00e9 Samison","raw_affiliation_strings":["Centre d'Infectiologie Charles M\u00e9rieux, University of Antananarivo, Antananarivo, Madagascar"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre d'Infectiologie Charles M\u00e9rieux, University of Antananarivo, Antananarivo, Madagascar","institution_ids":["https://openalex.org/I137724175"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010742802","display_name":"Laurence Armand-Lef\u00e8vre","orcid":"https://orcid.org/0000-0002-2013-3252","observed_orcids":["https://orcid.org/0000-0002-2013-3252"]},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I204730241","display_name":"Universit\u00e9 Paris Cit\u00e9","ror":"https://ror.org/05f82e368","country_code":"FR","type":"education","lineage":["https://openalex.org/I204730241"]},{"id":"https://openalex.org/I4210097159","display_name":"Assistance Publique \u2013 H\u00f4pitaux de Paris","ror":"https://ror.org/00pg5jh14","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159"]},{"id":"https://openalex.org/I4210145170","display_name":"H\u00f4pital Bichat-Claude-Bernard","ror":"https://ror.org/03fdnmv92","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210145170"]},{"id":"https://openalex.org/I4387156044","display_name":"Infection, Anti-microbiens, Mod\u00e9lisation, Evolution","ror":"https://ror.org/05hqep952","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Laurence Armand-Lefevre","raw_affiliation_strings":["Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France. Electronic address: laurence.armand@aphp.fr","Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France","Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-2013-3252","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France; Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France. Electronic address: laurence.armand@aphp.fr","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210097159","https://openalex.org/I4210145170","https://openalex.org/I4387156044"]},{"raw_affiliation_string":"Laboratoire de Bact\u00e9riologie, H\u00f4pital Bichat-Claude Bernard, AP-HP Nord-Universit\u00e9 Paris Cit\u00e9, Paris, France","institution_ids":["https://openalex.org/I204730241","https://openalex.org/I4210097159","https://openalex.org/I4210145170"]},{"raw_affiliation_string":"Universit\u00e9 Paris Cit\u00e9, IAME, INSERM UMR 1137, Paris, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4387156044"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5010742802"],"corresponding_institution_ids":["https://openalex.org/I154526488","https://openalex.org/I204730241","https://openalex.org/I4210097159","https://openalex.org/I4210145170","https://openalex.org/I4387156044"],"apc_list":{"value":6300,"currency":"USD","value_usd":6300},"apc_paid":{"value":6300,"currency":"USD","value_usd":6300},"fwci":10.6993,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.99474802,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"5","issue":"8","first_page":"100850","last_page":"100850"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10897","display_name":"Antibiotic Use and Resistance","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10419","display_name":"Pharmaceutical and Antibiotic Environmental Impacts","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/2310","display_name":"Pollution"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/extended-spectrum-beta-lactamase","display_name":"extended-spectrum beta-lactamase","score":0.9419999718666077},{"id":"https://openalex.org/keywords/esbl-producing-escherichia-coli","display_name":"ESBL-producing Escherichia coli","score":0.859000027179718},{"id":"https://openalex.org/keywords/antimicrobial-resistance","display_name":"antimicrobial resistance","score":0.9200000166893005},{"id":"https://openalex.org/keywords/one-health","display_name":"One Health","score":0.8059999942779541},{"id":"https://openalex.org/keywords/plasmid-replicons","display_name":"plasmid replicons","score":0.7900000214576721},{"id":"https://openalex.org/keywords/plasmid-mediated-resistance-genes","display_name":"plasmid-mediated resistance genes","score":0.49900001287460327},{"id":"https://openalex.org/keywords/chickens","display_name":"chickens","score":0.34299999475479126},{"id":"https://openalex.org/keywords/surface-water","display_name":"surface water","score":0.46000000834465027},{"id":"https://openalex.org/keywords/wastewater","display_name":"wastewater","score":0.7639999985694885},{"id":"https://openalex.org/keywords/slaughterhouse-wastewater","display_name":"slaughterhouse wastewater","score":0.9259999990463257},{"id":"https://openalex.org/keywords/pregnant-women","display_name":"pregnant women","score":0.6909999847412109},{"id":"https://openalex.org/keywords/bloodstream-infection","display_name":"bloodstream infection","score":0.8809999823570251},{"id":"https://openalex.org/keywords/virulence-genes","display_name":"virulence genes","score":0.6790000200271606},{"id":"https://openalex.org/keywords/sequence-types","display_name":"sequence types","score":0.4860000014305115},{"id":"https://openalex.org/keywords/genomic-epidemiology","display_name":"genomic epidemiology","score":0.6029999852180481},{"id":"https://openalex.org/keywords/madagascar","display_name":"Madagascar","score":0.6470000147819519},{"id":"https://openalex.org/keywords/low-income-countries","display_name":"low-income countries","score":0.6330000162124634}],"concepts":[{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.7827010154724121},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.6251853704452515},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.5108560919761658},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48828911781311035},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.47051090002059937},{"id":"https://openalex.org/C138816342","wikidata":"https://www.wikidata.org/wiki/Q189603","display_name":"Public health","level":2,"score":0.4696689546108246},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.448013037443161},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.4188097417354584},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.4176385998725891},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.34564778208732605},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24015173316001892},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23528075218200684},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2223101258277893},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.1453675627708435},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000293","descriptor_name":"Adolescent","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000328","descriptor_name":"Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D000900","descriptor_name":"Anti-Bacterial Agents","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D001618","descriptor_name":"beta-Lactamases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002645","descriptor_name":"Chickens","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000201","qualifier_name":"enzymology","is_major_topic":true},{"descriptor_ui":"D004926","descriptor_name":"Escherichia coli","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000188","qualifier_name":"drug therapy","is_major_topic":true},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":true},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":true},{"descriptor_ui":"D004927","descriptor_name":"Escherichia coli Infections","qualifier_ui":"Q000662","qualifier_name":"veterinary","is_major_topic":true},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008270","descriptor_name":"Madagascar","qualifier_ui":"Q000453","qualifier_name":"epidemiology","is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008875","descriptor_name":"Middle Aged","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010957","descriptor_name":"Plasmids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011247","descriptor_name":"Pregnancy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011446","descriptor_name":"Prospective Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015995","descriptor_name":"Prevalence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055815","descriptor_name":"Young Adult","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1016/s2666-5247(24)00065-x","doi":"https://doi.org/10.1016/s2666-5247(24)00065-x","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s2666-5247(24)00065-x","pdf_url":"http://www.thelancet.com/article/S266652472400065X/pdf","source":{"id":"https://openalex.org/S4210190705","display_name":"The Lancet Microbe","issn_l":"2666-5247","issn":["2666-5247"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-1","oarl","poland-20"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet Microbe","raw_type":"journal-article"},{"id":"doi:10.1101/2023.01.16.23284583","doi":"https://doi.org/10.1101/2023.01.16.23284583","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2023.01.16.23284583","pdf_url":"https://www.medrxiv.org/content/medrxiv/early/2023/01/18/2023.01.16.23284583.full.pdf","source":{"id":"https://openalex.org/S3005729997","display_name":"medRxiv","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":["https://openalex.org/P4310315909"],"host_organization_lineage_names":["Cold Spring Harbor Laboratory Press"],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"medRxiv","raw_type":"posted-content"},{"id":"pmid:38908389","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38908389","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet. Microbe","raw_type":"Journal Article"},{"id":"pmh:oai:pure.eur.nl:openaire/00d93b8b-d132-4e06-8d13-04b3a5354329","doi":null,"is_oa":true,"landing_page_url":"https://pure.eur.nl/en/publications/00d93b8b-d132-4e06-8d13-04b3a5354329","pdf_url":null,"source":{"id":"https://openalex.org/S4306401266","display_name":"EUR Research Repository (Erasmus University Rotterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I913958620","host_organization_name":"Erasmus University Rotterdam","host_organization_lineage":["https://openalex.org/I913958620"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1016/s2666-5247(24)00065-x","doi":"https://doi.org/10.1016/s2666-5247(24)00065-x","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s2666-5247(24)00065-x","pdf_url":"http://www.thelancet.com/article/S266652472400065X/pdf","source":{"id":"https://openalex.org/S4210190705","display_name":"The Lancet Microbe","issn_l":"2666-5247","issn":["2666-5247"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-1","oarl","poland-20"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The Lancet Microbe","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.9537000060081482,"display_name":"Good health and well-being"}],"study_designs":[{"id":"https://openalex.org/study-designs/observational-study","display_name":"Observational Study"}],"awards":[{"id":"https://openalex.org/G1186624241","display_name":"Human Genetics and Disease Biology: Core Renewal for the Wellcome Trust Centre for Human Genetics","funder_award_id":"203141/Z/16/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G7328908021","display_name":"Human Genetics and Disease Biology: Core Renewal for the Wellcome Trust Centre for Human Genetics","funder_award_id":"203141","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320325202","display_name":"Fondation M\u00e9rieux","ror":"https://ror.org/01m6mfc08"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399797352.pdf","grobid_xml":"https://content.openalex.org/works/W4399797352.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W93588716","https://openalex.org/W1500120202","https://openalex.org/W1961504819","https://openalex.org/W1970103602","https://openalex.org/W1980310800","https://openalex.org/W2058248134","https://openalex.org/W2074491517","https://openalex.org/W2091030812","https://openalex.org/W2091452614","https://openalex.org/W2096093282","https://openalex.org/W2108089570","https://openalex.org/W2117043113","https://openalex.org/W2118442768","https://openalex.org/W2122673596","https://openalex.org/W2124967403","https://openalex.org/W2128438807","https://openalex.org/W2130010389","https://openalex.org/W2134852597","https://openalex.org/W2143325926","https://openalex.org/W2152859383","https://openalex.org/W2553170472","https://openalex.org/W2601567326","https://openalex.org/W2765650691","https://openalex.org/W2771077517","https://openalex.org/W2781663341","https://openalex.org/W2791527951","https://openalex.org/W2794623497","https://openalex.org/W2803599078","https://openalex.org/W2809619040","https://openalex.org/W2900102202","https://openalex.org/W2908766782","https://openalex.org/W2922256653","https://openalex.org/W2946715758","https://openalex.org/W2951228794","https://openalex.org/W2952167528","https://openalex.org/W2968227964","https://openalex.org/W2968953218","https://openalex.org/W2981886860","https://openalex.org/W3005235420","https://openalex.org/W3008810229","https://openalex.org/W3036685142","https://openalex.org/W3089693088","https://openalex.org/W3143063265","https://openalex.org/W3216351184","https://openalex.org/W4200281472","https://openalex.org/W4206677002","https://openalex.org/W4213130967","https://openalex.org/W4281652480","https://openalex.org/W4377042569","https://openalex.org/W4381470641"],"related_works":["https://openalex.org/W4317240944","https://openalex.org/W7201951658","https://openalex.org/W4200281472","https://openalex.org/W4226371226","https://openalex.org/W4403468175","https://openalex.org/W3203638777","https://openalex.org/W4392677815","https://openalex.org/W4416827347","https://openalex.org/W4381470641","https://openalex.org/W4410744921"],"abstract_inverted_index":{"Background":[0],"Antimicrobial":[1],"resistance":[2,228],"(AMR)":[3],"is":[4,26],"a":[5,47,105,186,212,423,517,522,531],"major":[6],"public":[7],"health":[8],"threat,":[9],"affecting":[10],"not":[11],"only":[12],"people":[13],"but":[14],"also":[15],"animals":[16],"and":[17,65,79,82,89,118,140,145,153,192,201,229,233,255,261,301,328,344,396,419,446,455,460,480,497,504,520,538],"the":[18,34,60,66,149,157,241,268,461,505],"environment.":[19],"The":[20,178,309,452,510],"One":[21,532],"Health":[22,533],"dimension":[23],"of":[24,36,85,180,223,276,292,298,304,320,333,370,381,387,413,428,439,450,473,528],"AMR":[25,529],"well":[27],"known;":[28],"however,":[29],"data":[30,100],"are":[31,499],"lacking":[32],"on":[33,52,189,211,422],"circulation":[35,84],"resistance-conferring":[37],"genes,":[38],"particularly":[39],"in":[40,59,71,137,156,287,322,425,471,483,507,516],"low-income":[41,518],"countries.":[42],"In":[43,92],"2017,":[44],"WHO":[45],"proposed":[46],"protocol":[48,512],"called":[49],"Tricycle,":[50],"focusing":[51],"extended-spectrum":[53],"\u03b2-lactamase":[54],"(ESBL)-":[55],"Escherichia":[56],"coli":[57,77,88,176,274,284,495],"surveillance":[58],"three":[61,135,402],"sectors":[62,395,479],"(humans,":[63],"animals,":[64],"environment).":[67],"We":[68,220,236],"implemented":[69,515],"Tricycle":[70,511],"Madagascar":[72],"to":[73,114,129,165,313],"assess":[74],"ESBL-":[75,86,174,282,493],"E":[76,87,175,273,283,494],"prevalence":[78],"describe":[80],"intrasector":[81],"intersector":[83],"plasmids.":[90],"Methods":[91],"this":[93],"prospective":[94],"study,":[95],"we":[96],"collected":[97,254],"blood":[98,251,269],"culture":[99],"from":[101,110,121,125,134,142,148,161,249,289,338,342,346,393,400,477,530],"hospitalised":[102],"patients":[103],"with":[104,317,357],"suspected":[106],"bloodstream":[107],"infection":[108],"processed":[109],"May":[111],"1,":[112],"2018,":[113,128,164],"April":[115,130,162,166],"30,":[116,127,167],"2019,":[117,132],"rectal":[119],"swabs":[120],"healthy":[122],"pregnant":[123,257,294,339],"women":[124],"July":[126],"27,":[131],"both":[133,492],"hospitals":[136],"Antananarivo,":[138,508],"Madagascar;":[139],"caeca":[141],"farm":[143],"chickens":[144,329],"surface":[146,263,306],"waters":[147,264],"Ikopa":[150],"river,":[151],"wastewater,":[152],"slaughterhouse":[154],"effluents":[155],"Antananarivo":[158],"area,":[159],"Madagascar,":[160],"9,":[163],"2019.":[168],"All":[169],"samples":[170,288],"were":[171,183,253,265,280,406,420,434,465,469,481],"tested":[172],"for":[173,525],".":[177],"genomes":[179,222],"all":[181,401,407,466,478],"isolates":[182,239,336,372,384,392,399,472],"sequenced":[184],"using":[185,206,240],"short-read":[187],"method":[188,210,244],"NextSeq":[190],"500":[191],"NovaSeq":[193],"6000":[194],"platforms":[195],"(Illumina,":[196],"San":[197],"Diego,":[198],"CA,":[199],"USA)":[200],"those":[202],"carrying":[203],"plasmid":[204,234,424],"replicons":[205],"an":[207],"additional":[208],"long-read":[209],"MinION":[213],"platform":[214],"(Oxford":[215],"Nanopore":[216],"Technologies,":[217],"Oxford,":[218],"UK).":[219],"characterised":[221],"isolated":[224],"strains":[225,496],"(sequence":[226],"type,":[227],"virulence":[230],"gene":[231],"content,":[232],"replicons).":[235],"then":[237],"compared":[238],"variant":[242],"calling":[243],"(single-nucleotide":[245],"polymorphism).":[246],"Findings":[247],"Data":[248],"1056":[250],"cultures":[252],"289":[256,293],"women,":[258,295,340],"246":[259,299],"chickens,":[260,300,343,503],"28":[262,302,305],"sampled.":[266],"Of":[267],"cultures,":[270],"18":[271],"contained":[272,391,398],",":[275],"which":[277,388,464],"seven":[278],"(39%)":[279],"ESBL.":[281],"was":[285,315],"present":[286],"86":[290],"(30%)":[291],"140":[296],"(57%)":[297],"(100%)":[303],"water":[307],"samples.":[308],"wet":[310],"season":[311],"(November":[312],"April)":[314],"associated":[316],"higher":[318],"rates":[319],"carriage":[321],"humans":[323],"(odds":[324],"ratio":[325],"3\u00b708":[326],"[1\u00b781\u20135\u00b727])":[327],"(2\u00b779":[330],"[1\u00b765\u20134\u00b781]).":[331],"Sequencing":[332],"277":[334,371,414,429],"non-duplicated":[335],"(82":[337],"118":[341],"77":[345],"environmental":[347],"samples)":[348],"showed":[349],"high":[350],"genetic":[351,475],"diversity":[352],"(90":[353],"sequence":[354],"types":[355],"identified)":[356],"sector-specific":[358,489],"genomic":[359],"features.":[360],"Single":[361],"nucleotide":[362],"polymorphism":[363],"(SNP)":[364],"analysis":[365],"revealed":[366],"that":[367],"169":[368],"(61%)":[369],"grouped":[373],"into":[374],"44":[375],"clusters":[376,390],"(two":[377],"or":[378],"more":[379],"isolates)":[380],"closely":[382],"related":[383],"(<40":[385],"SNPs),":[386],"24":[389],"two":[394,444],"five":[397],"sectors.":[403],"ESBL":[404],"genes":[405],"bla":[408,416],"CTX-M":[409],"variants":[410],"(215":[411],"[78%]":[412],"being":[415],"CTX-M-15":[417],")":[418],"located":[421],"113":[426],"(41%)":[427],"isolates.":[430],"These":[431],"ESBL-carrying":[432],"plasmids":[433,498],"mainly":[435],"IncF":[436],"(63":[437],"[55%]":[438],"114;":[440],"one":[441],"strain":[442],"carried":[443],"plasmids)":[445],"IncY":[447,462],"(42":[448],"[37%]":[449],"114).":[451],"F31/36:A4:B1":[453],"(n=13)":[454],"F-:A-:B53":[456],"(n=8)":[457],"pMLST":[458],"subtypes,":[459],"plasmids,":[463],"highly":[467],"conserved,":[468],"observed":[470],"differing":[474],"backgrounds":[476],"transferable":[482],"vitro":[484],"by":[485],"conjugation.":[486],"Interpretation":[487],"Despite":[488],"population":[490],"structures,":[491],"circulating":[500],"among":[501],"humans,":[502],"environment":[506],"Madagascar.":[509],"can":[513],"be":[514],"country":[519],"represents":[521],"powerful":[523],"tool":[524],"investigating":[526],"dissemination":[527],"perspective.":[534],"Funding":[535],"Fondation":[536],"M\u00e9rieux":[537],"INSERM,":[539],"Universit\u00e9":[540],"Paris":[541],"Cit\u00e9.":[542]},"counts_by_year":[{"year":2026,"cited_by_count":40},{"year":2025,"cited_by_count":18},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":5}],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2024-06-20T00:00:00"}
