{"id":"https://openalex.org/W4397033717","doi":"https://doi.org/10.1111/cla.12584","title":"On the importance of sequence alignment inspections in plastid phylogenomics \u2013 an example from revisiting the relationships of the water\u2010lilies","display_name":"On the importance of sequence alignment inspections in plastid phylogenomics \u2013 an example from revisiting the relationships of the water\u2010lilies","publication_year":2024,"publication_date":"2024-05-18","ids":{"openalex":"https://openalex.org/W4397033717","doi":"https://doi.org/10.1111/cla.12584","pmid":"https://pubmed.ncbi.nlm.nih.gov/38761095"},"language":"en","primary_location":{"id":"doi:10.1111/cla.12584","doi":"https://doi.org/10.1111/cla.12584","is_oa":true,"landing_page_url":"https://doi.org/10.1111/cla.12584","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/cla.12584","source":{"id":"https://openalex.org/S90511721","display_name":"Cladistics","issn_l":"0748-3007","issn":["0748-3007","1096-0031"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cladistics","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/cla.12584","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048614137","display_name":"Jessica A. Roestel","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jessica A. Roestel","raw_affiliation_strings":["Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie Freie Universit\u00e4t Berlin  Berlin 14195 Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie Freie Universit\u00e4t Berlin  Berlin 14195 Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074012607","display_name":"John H. Wiersema","orcid":"https://orcid.org/0000-0001-9383-2807","observed_orcids":["https://orcid.org/0000-0001-9383-2807"]},"institutions":[{"id":"https://openalex.org/I103187081","display_name":"Smithsonian Institution","ror":"https://ror.org/01pp8nd67","country_code":"US","type":"government","lineage":["https://openalex.org/I103187081"]},{"id":"https://openalex.org/I1341618623","display_name":"National Museum of Natural History","ror":"https://ror.org/00cz47042","country_code":"US","type":"archive","lineage":["https://openalex.org/I103187081","https://openalex.org/I1341618623"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John H. Wiersema","raw_affiliation_strings":["Department of Botany National Museum of Natural History \u2013 Smithsonian Institution  Washington DC 37012 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Botany National Museum of Natural History \u2013 Smithsonian Institution  Washington DC 37012 USA","institution_ids":["https://openalex.org/I103187081","https://openalex.org/I1341618623"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001121649","display_name":"Robert K. Jansen","orcid":"https://orcid.org/0000-0002-0662-9032","observed_orcids":["https://orcid.org/0000-0002-0662-9032"]},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert K. Jansen","raw_affiliation_strings":["Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712 USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047115746","display_name":"Thomas Borsch","orcid":"https://orcid.org/0000-0002-5724-2786","observed_orcids":["https://orcid.org/0000-0002-5724-2786"]},"institutions":[{"id":"https://openalex.org/I4210086012","display_name":"Botanic Garden and Botanical Museum Berlin","ror":"https://ror.org/00bv4cx53","country_code":"DE","type":"archive","lineage":["https://openalex.org/I4210086012","https://openalex.org/I75951250"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Borsch","raw_affiliation_strings":["Botanischer Garten und Botanisches Museum Berlin Freie Universit\u00e4t Berlin  14195 Berlin Germany","Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie Freie Universit\u00e4t Berlin  Berlin 14195 Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Botanischer Garten und Botanisches Museum Berlin Freie Universit\u00e4t Berlin  14195 Berlin Germany","institution_ids":["https://openalex.org/I4210086012","https://openalex.org/I75951250"]},{"raw_affiliation_string":"Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie Freie Universit\u00e4t Berlin  Berlin 14195 Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021224578","display_name":"Michael Gruenstaeudl","orcid":"https://orcid.org/0000-0002-1666-1773","observed_orcids":["https://orcid.org/0000-0002-1666-1773"]},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]},{"id":"https://openalex.org/I91083438","display_name":"Fort Hays State University","ror":"https://ror.org/00rwzgx62","country_code":"US","type":"education","lineage":["https://openalex.org/I91083438"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Michael Gruenstaeudl","raw_affiliation_strings":["Department of Biological Sciences, Fort Hays State University, Hays, KS, 67601 USA","Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie Freie Universit\u00e4t Berlin  Berlin 14195 Germany"],"raw_orcid":"https://orcid.org/0000-0002-1666-1773","affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Fort Hays State University, Hays, KS, 67601 USA","institution_ids":["https://openalex.org/I91083438"]},{"raw_affiliation_string":"Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie Freie Universit\u00e4t Berlin  Berlin 14195 Germany","institution_ids":["https://openalex.org/I75951250"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5021224578"],"corresponding_institution_ids":["https://openalex.org/I75951250","https://openalex.org/I91083438"],"apc_list":{"value":3810,"currency":"USD","value_usd":3810},"apc_paid":{"value":3810,"currency":"USD","value_usd":3810},"fwci":2.4171,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.88261172,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"40","issue":"5","first_page":"469","last_page":"495"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13168","display_name":"Plant Ecology and Taxonomy Studies","score":0.015799999237060547,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/water-lily","display_name":"water lily","score":0.7870000004768372},{"id":"https://openalex.org/keywords/nymphaeaceae","display_name":"Nymphaeaceae","score":0.9729999899864197},{"id":"https://openalex.org/keywords/plastid-phylogenomics","display_name":"plastid phylogenomics","score":0.8690000176429749},{"id":"https://openalex.org/keywords/chloroplast-genome","display_name":"chloroplast genome","score":0.7319999933242798},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"sequence alignment","score":0.5860000252723694},{"id":"https://openalex.org/keywords/nymphaea","display_name":"Nymphaea","score":0.7059999704360962},{"id":"https://openalex.org/keywords/euryale","display_name":"Euryale","score":0.8259999752044678},{"id":"https://openalex.org/keywords/victoria","display_name":"Victoria","score":0.9829999804496765},{"id":"https://openalex.org/keywords/paraphyly","display_name":"paraphyly","score":0.6660000085830688},{"id":"https://openalex.org/keywords/angiosperm-phylogeny","display_name":"angiosperm phylogeny","score":0.7630000114440918},{"id":"https://openalex.org/keywords/intergenic-spacer","display_name":"intergenic spacer","score":0.7310000061988831},{"id":"https://openalex.org/keywords/introns","display_name":"introns","score":0.6620000004768372}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7948493957519531},{"id":"https://openalex.org/C2779141871","wikidata":"https://www.wikidata.org/wiki/Q24779283","display_name":"NdhF","level":5,"score":0.7634345293045044},{"id":"https://openalex.org/C160525816","wikidata":"https://www.wikidata.org/wiki/Q208755","display_name":"Paraphyly","level":5,"score":0.7296217679977417},{"id":"https://openalex.org/C70343354","wikidata":"https://www.wikidata.org/wiki/Q3381973","display_name":"Phylogenomics","level":5,"score":0.7024052739143372},{"id":"https://openalex.org/C12326286","wikidata":"https://www.wikidata.org/wiki/Q210958","display_name":"Monophyly","level":5,"score":0.6787022352218628},{"id":"https://openalex.org/C48050816","wikidata":"https://www.wikidata.org/wiki/Q3182853","display_name":"Chloroplast DNA","level":4,"score":0.6354367733001709},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.5804175138473511},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5372253656387329},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.531785249710083},{"id":"https://openalex.org/C2779267337","wikidata":"https://www.wikidata.org/wiki/Q19596352","display_name":"Character evolution","level":5,"score":0.48701292276382446},{"id":"https://openalex.org/C93829228","wikidata":"https://www.wikidata.org/wiki/Q165963","display_name":"Plastid","level":4,"score":0.4834176301956177},{"id":"https://openalex.org/C137374422","wikidata":"https://www.wikidata.org/wiki/Q3238261","display_name":"Subgenus","level":3,"score":0.47522643208503723},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.30818232893943787},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21137994527816772},{"id":"https://openalex.org/C157369684","wikidata":"https://www.wikidata.org/wiki/Q34740","display_name":"Genus","level":2,"score":0.12424537539482117},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08033990859985352},{"id":"https://openalex.org/C69305403","wikidata":"https://www.wikidata.org/wiki/Q47263","display_name":"Chloroplast","level":3,"score":0.057526350021362305}],"mesh":[{"descriptor_ui":"D007438","descriptor_name":"Introns","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018087","descriptor_name":"Plastids","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030721","descriptor_name":"Nymphaea","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030721","descriptor_name":"Nymphaea","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D054627","descriptor_name":"Genome, Plastid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":9,"locations":[{"id":"doi:10.1111/cla.12584","doi":"https://doi.org/10.1111/cla.12584","is_oa":true,"landing_page_url":"https://doi.org/10.1111/cla.12584","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/cla.12584","source":{"id":"https://openalex.org/S90511721","display_name":"Cladistics","issn_l":"0748-3007","issn":["0748-3007","1096-0031"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cladistics","raw_type":"journal-article"},{"id":"pmid:38761095","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38761095","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cladistics : the international journal of the Willi Hennig Society","raw_type":"Journal Article"},{"id":"pmh:oai:scholars.fhsu.edu:biology_facpubs-1031","doi":null,"is_oa":true,"landing_page_url":"https://scholars.fhsu.edu/biology_facpubs/32","pdf_url":null,"source":{"id":"https://openalex.org/S4377196602","display_name":"FHSU Scholars Repository (Fort Hays State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I91083438","host_organization_name":"Fort Hays State University","host_organization_lineage":["https://openalex.org/I91083438"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biological Sciences Faculty Publications","raw_type":"text"},{"id":"pmh:oai:refubium.fu-berlin.de:fub188/43733","doi":null,"is_oa":true,"landing_page_url":"https://refubium.fu-berlin.de/handle/fub188/43733","pdf_url":null,"source":{"id":"https://openalex.org/S4306402444","display_name":"Refubium (Universit\u00e4tsbibliothek der Freien Universit\u00e4t Berlin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I75951250","host_organization_name":"Freie Universit\u00e4t Berlin","host_organization_lineage":["https://openalex.org/I75951250"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doc-type:article"},{"id":"pmh:oai:zenodo.org:7860937","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7860937","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.17169/refubium-43448","doi":"https://doi.org/10.17169/refubium-43448","is_oa":true,"landing_page_url":"https://doi.org/10.17169/refubium-43448","pdf_url":null,"source":{"id":"https://openalex.org/S7407052913","display_name":"Universit\u00e4tsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5281/zenodo.4672108","doi":"https://doi.org/10.5281/zenodo.4672108","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.4672108","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.5281/zenodo.4672109","doi":"https://doi.org/10.5281/zenodo.4672109","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.4672109","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.5281/zenodo.7860937","doi":"https://doi.org/10.5281/zenodo.7860937","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7860937","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1111/cla.12584","doi":"https://doi.org/10.1111/cla.12584","is_oa":true,"landing_page_url":"https://doi.org/10.1111/cla.12584","pdf_url":"https://onlinelibrary.wiley.com/doi/pdfdirect/10.1111/cla.12584","source":{"id":"https://openalex.org/S90511721","display_name":"Cladistics","issn_l":"0748-3007","issn":["0748-3007","1096-0031"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-a","jufo-2","ki-jl-2","medline","norway-2","poland-140","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320595","host_organization_name":"Wiley","host_organization_lineage":["https://openalex.org/P4310320595"],"host_organization_lineage_names":["Wiley"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cladistics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G2921881625","display_name":null,"funder_award_id":"P20 GM103418","funder_id":"https://openalex.org/F4320318255","funder_display_name":"Kansas IDeA Network of Biomedical Research Excellence"},{"id":"https://openalex.org/G3027536161","display_name":"PlastidenPhylogenomik von Seerosen, mit Schwerpunkt auf Partitionierungsstrategien und der Entwicklung bioinformatischer Methoden","funder_award_id":"418670221","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8853000093","display_name":null,"funder_award_id":"P20 GM103418 (subaward GR509061)","funder_id":"https://openalex.org/F4320318255","funder_display_name":"Kansas IDeA Network of Biomedical Research Excellence"}],"funders":[{"id":"https://openalex.org/F4320312652","display_name":"Willi Hennig Society","ror":"https://ror.org/029xmja08"},{"id":"https://openalex.org/F4320318255","display_name":"Kansas IDeA Network of Biomedical Research Excellence","ror":null},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4397033717.pdf","grobid_xml":"https://content.openalex.org/works/W4397033717.grobid-xml"},"referenced_works_count":102,"referenced_works":["https://openalex.org/W1596228216","https://openalex.org/W1659960894","https://openalex.org/W1846926012","https://openalex.org/W1967426888","https://openalex.org/W1975282045","https://openalex.org/W1977415869","https://openalex.org/W1982413443","https://openalex.org/W1985154083","https://openalex.org/W1988123545","https://openalex.org/W1992720708","https://openalex.org/W2013298312","https://openalex.org/W2017528171","https://openalex.org/W2021883973","https://openalex.org/W2035622691","https://openalex.org/W2044096000","https://openalex.org/W2051373750","https://openalex.org/W2053514564","https://openalex.org/W2059466542","https://openalex.org/W2066615914","https://openalex.org/W2067104025","https://openalex.org/W2073661767","https://openalex.org/W2074830661","https://openalex.org/W2076508551","https://openalex.org/W2077232789","https://openalex.org/W2081833503","https://openalex.org/W2086286885","https://openalex.org/W2095040593","https://openalex.org/W2096042561","https://openalex.org/W2099135443","https://openalex.org/W2101133358","https://openalex.org/W2108264366","https://openalex.org/W2111762123","https://openalex.org/W2117801354","https://openalex.org/W2117884309","https://openalex.org/W2119900532","https://openalex.org/W2121370091","https://openalex.org/W2122082385","https://openalex.org/W2125270888","https://openalex.org/W2127688908","https://openalex.org/W2127847431","https://openalex.org/W2127860913","https://openalex.org/W2128880918","https://openalex.org/W2131271579","https://openalex.org/W2133559537","https://openalex.org/W2138468761","https://openalex.org/W2140952049","https://openalex.org/W2141052558","https://openalex.org/W2142635246","https://openalex.org/W2143882457","https://openalex.org/W2146058063","https://openalex.org/W2150270014","https://openalex.org/W2158192817","https://openalex.org/W2159529678","https://openalex.org/W2160378127","https://openalex.org/W2160913333","https://openalex.org/W2163110314","https://openalex.org/W2164541345","https://openalex.org/W2171689183","https://openalex.org/W2182342509","https://openalex.org/W2225854829","https://openalex.org/W2258865027","https://openalex.org/W2320770953","https://openalex.org/W2327639708","https://openalex.org/W2401311635","https://openalex.org/W2438549965","https://openalex.org/W2475160608","https://openalex.org/W2501045737","https://openalex.org/W2502232598","https://openalex.org/W2527201061","https://openalex.org/W2582743722","https://openalex.org/W2612261225","https://openalex.org/W2724836997","https://openalex.org/W2775558344","https://openalex.org/W2799318107","https://openalex.org/W2801159594","https://openalex.org/W2809197864","https://openalex.org/W2809677581","https://openalex.org/W2883251903","https://openalex.org/W2891847180","https://openalex.org/W2899474303","https://openalex.org/W2903436430","https://openalex.org/W2915395120","https://openalex.org/W2943591933","https://openalex.org/W2948873612","https://openalex.org/W2953289982","https://openalex.org/W2969866109","https://openalex.org/W2985592114","https://openalex.org/W2995259736","https://openalex.org/W3014432010","https://openalex.org/W3017993448","https://openalex.org/W3042522572","https://openalex.org/W3084201551","https://openalex.org/W3207729497","https://openalex.org/W4210519461","https://openalex.org/W4238719510","https://openalex.org/W4281386736","https://openalex.org/W4283792981","https://openalex.org/W4283825972","https://openalex.org/W4308687190","https://openalex.org/W4317708817","https://openalex.org/W4366549782","https://openalex.org/W4385800729"],"related_works":["https://openalex.org/W6912697968","https://openalex.org/W3123861589","https://openalex.org/W1975282045","https://openalex.org/W4401595099","https://openalex.org/W2138468761","https://openalex.org/W2121370091","https://openalex.org/W2385055469","https://openalex.org/W4312374721","https://openalex.org/W2020876080","https://openalex.org/W2527201061"],"abstract_inverted_index":{"The":[0,50,213],"water-lily":[1,67,286],"clade":[2],"represents":[3],"the":[4,19,22,28,38,62,66,70,82,100,117,128,132,178,181,186,208,230,239,258,270],"second":[5],"earliest-diverging":[6],"branch":[7],"of":[8,11,17,43,61,108,119,131,180,189,207,215,229,233,248],"angiosperms.":[9],"Most":[10],"its":[12,224],"species":[13],"belong":[14],"to":[15,58,176,185,244],"Nymphaeaceae,":[16,40],"which":[18,149],"\"core":[20],"Nymphaeaceae\"-comprising":[21],"genera":[23],"Euryale,":[24],"Nymphaea":[25,220,234,241,259],"and":[26,53,112,152,157,170,237,263],"Victoria-is":[27],"most":[29,60],"diverse":[30],"clade.":[31],"Despite":[32,69],"previous":[33],"molecular":[34,78],"phylogenetic":[35,79,129,202,271],"studies":[36],"on":[37,81,87,99,116,285],"core":[39,83,101,133],"various":[41],"aspects":[42],"their":[44],"evolutionary":[45,255],"relationships":[46,256],"have":[47],"remained":[48],"unresolved.":[49],"length-variable":[51],"introns":[52,111],"intergenic":[54,113],"spacers":[55,114],"are":[56,155,279],"known":[57],"contain":[59],"sequence":[63,74,106,121,162],"variability":[64],"within":[65,257],"plastomes.":[68],"challenges":[71],"with":[72,282],"multiple":[73],"alignment,":[75,163],"any":[76],"new":[77,95],"investigation":[80],"Nymphaeaceae":[84,102,134],"should":[85,103],"focus":[86],"these":[88,216],"noncoding":[89,153],"plastome":[90,209],"regions.":[91],"For":[92],"example,":[93],"a":[94,143,166],"plastid":[96,110,144],"phylogenomic":[97,145],"study":[98],"generate":[104],"DNA":[105,161],"alignments":[107],"all":[109,150,245],"based":[115],"principle":[118],"conserved":[120],"motifs.":[122],"In":[123,265],"this":[124],"investigation,":[125],"we":[126,141,267],"revisit":[127],"history":[130],"by":[135,165],"employing":[136],"such":[137],"an":[138],"approach.":[139],"Specifically,":[140],"use":[142],"analysis":[146],"strategy":[147],"in":[148,223,280],"coding":[151],"partitions":[154],"separated":[156],"then":[158],"undergo":[159],"software-driven":[160],"followed":[164],"motif-based":[167,276],"alignment":[168,277],"inspection":[169],"adjustment.":[171],"This":[172],"approach":[173,198],"allows":[174],"us":[175],"increase":[177],"reliability":[179],"character":[182],"base":[183],"compared":[184],"default":[187],"practice":[188],"aligning":[190],"complete":[191],"plastomes":[192],"through":[193,274],"software":[194],"algorithms":[195],"alone.":[196],"Our":[197,250],"produces":[199],"significantly":[200],"different":[201],"tree":[203],"reconstructions":[204,217,272],"for":[205],"several":[206],"regions":[210],"under":[211],"study.":[212],"results":[214,251],"underscore":[218],"that":[219,227,238],"is":[221,235,242],"paraphyletic":[222],"current":[225],"circumscription,":[226],"each":[228],"five":[231],"subgenera":[232,247,260],"monophyletic,":[236],"subgenus":[240],"sister":[243],"other":[246],"Nymphaea.":[249,264],"also":[252],"clarify":[253],"many":[254],"Brachyceras,":[261],"Hydrocallis":[262],"closing,":[266],"discuss":[268],"whether":[269],"obtained":[273],"our":[275],"adjustments":[278],"line":[281],"morphological":[283],"evidence":[284],"evolution.":[287]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2024-05-19T00:00:00"}
