{"id":"https://openalex.org/W4396800538","doi":"https://doi.org/10.1107/s2053273323092185","title":"Exploring experimentally determined structures and computed structure models from artificial intelligence/machine learning at RCSB Protein Data Bank (RCSB PDB, RCSB.org)","display_name":"Exploring experimentally determined structures and computed structure models from artificial intelligence/machine learning at RCSB Protein Data Bank (RCSB PDB, RCSB.org)","publication_year":2023,"publication_date":"2023-08-22","ids":{"openalex":"https://openalex.org/W4396800538","doi":"https://doi.org/10.1107/s2053273323092185"},"language":"en","primary_location":{"id":"doi:10.1107/s2053273323092185","doi":"https://doi.org/10.1107/s2053273323092185","is_oa":true,"landing_page_url":"https://doi.org/10.1107/s2053273323092185","pdf_url":"https://doi.org/10.1107/s2053273323092185","source":{"id":"https://openalex.org/S4393918093","display_name":"Acta Crystallographica Section A Foundations and Advances","issn_l":"2053-2733","issn":["2053-2733"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-1","medline","norway-1","poland-200","russia-white-list-2"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Acta Crystallographica Section A Foundations and Advances","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1107/s2053273323092185","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074677048","display_name":"Dennis W. Piehl","orcid":"https://orcid.org/0000-0002-8315-2899","observed_orcids":["https://orcid.org/0000-0002-8315-2899"]},"institutions":[{"id":"https://openalex.org/I4388482661","display_name":"Worldwide Protein Data Bank","ror":"https://ror.org/047qy5748","country_code":"US","type":"archive","lineage":["https://openalex.org/I4388482661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. W. Piehl","raw_affiliation_strings":["Institute for Quantitative Biomedicine, and","RCSB Protein Data Bank,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Quantitative Biomedicine, and","institution_ids":[]},{"raw_affiliation_string":"RCSB Protein Data Bank,","institution_ids":["https://openalex.org/I4388482661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068648875","display_name":"Stephen Kevin Burley","orcid":"https://orcid.org/0000-0002-2487-9713","observed_orcids":["https://orcid.org/0000-0002-2487-9713"]},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4388482661","display_name":"Worldwide Protein Data Bank","ror":"https://ror.org/047qy5748","country_code":"US","type":"archive","lineage":["https://openalex.org/I4388482661"]},{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute","ror":"https://ror.org/0060x3y55","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. K. Burley","raw_affiliation_strings":["Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08903, USA","Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA","Institute for Quantitative Biomedicine, and","RCSB Protein Data Bank,","RCSB Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cancer Institute of New Jersey, Rutgers, The State University of New Jersey, New Brunswick, NJ 08903, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]},{"raw_affiliation_string":"Department of Chemistry and Chemical Biology, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Institute for Quantitative Biomedicine, and","institution_ids":[]},{"raw_affiliation_string":"RCSB Protein Data Bank,","institution_ids":["https://openalex.org/I4388482661"]},{"raw_affiliation_string":"RCSB Protein Data Bank, San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":4220,"currency":"USD","value_usd":4220},"apc_paid":{"value":4220,"currency":"USD","value_usd":4220},"fwci":0.1475,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.31888869,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"79","issue":"a2","first_page":"C397","last_page":"C397"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.6923999786376953,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.6923999786376953,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.27390000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.006300000008195639,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-structure-database","display_name":"protein structure database","score":0.4449999928474426}],"concepts":[{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.9804584980010986},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.8121560215950012},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.488130658864975},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.402262806892395},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3383881449699402},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.30877819657325745},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2204093039035797},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08799368143081665}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1107/s2053273323092185","doi":"https://doi.org/10.1107/s2053273323092185","is_oa":true,"landing_page_url":"https://doi.org/10.1107/s2053273323092185","pdf_url":"https://doi.org/10.1107/s2053273323092185","source":{"id":"https://openalex.org/S4393918093","display_name":"Acta Crystallographica Section A Foundations and Advances","issn_l":"2053-2733","issn":["2053-2733"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-1","medline","norway-1","poland-200","russia-white-list-2"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Acta Crystallographica Section A Foundations and Advances","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1107/s2053273323092185","doi":"https://doi.org/10.1107/s2053273323092185","is_oa":true,"landing_page_url":"https://doi.org/10.1107/s2053273323092185","pdf_url":"https://doi.org/10.1107/s2053273323092185","source":{"id":"https://openalex.org/S4393918093","display_name":"Acta Crystallographica Section A Foundations and Advances","issn_l":"2053-2733","issn":["2053-2733"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-b","jufo-1","medline","norway-1","poland-200","russia-white-list-2"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Acta Crystallographica Section A Foundations and Advances","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396800538.pdf","grobid_xml":"https://content.openalex.org/works/W4396800538.grobid-xml"},"referenced_works_count":1,"referenced_works":["https://openalex.org/W4249055169"],"related_works":["https://openalex.org/W4365793669","https://openalex.org/W4396801268","https://openalex.org/W4393167465","https://openalex.org/W4309908854","https://openalex.org/W4319917447","https://openalex.org/W4415590473","https://openalex.org/W4411273216","https://openalex.org/W7130545671","https://openalex.org/W3210775852","https://openalex.org/W2912129167"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-10-27T15:51:10.671819","created_date":"2024-05-11T00:00:00"}
