{"id":"https://openalex.org/W4396675554","doi":"https://doi.org/10.1186/s13072-024-00528-8","title":"The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit flies","display_name":"The probability of chromatin to be at the nuclear lamina has no systematic effect on its transcription level in fruit flies","publication_year":2024,"publication_date":"2024-05-05","ids":{"openalex":"https://openalex.org/W4396675554","doi":"https://doi.org/10.1186/s13072-024-00528-8","pmid":"https://pubmed.ncbi.nlm.nih.gov/38705995","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/11071202"},"language":"en","primary_location":{"id":"doi:10.1186/s13072-024-00528-8","doi":"https://doi.org/10.1186/s13072-024-00528-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13072-024-00528-8","pdf_url":"https://epigeneticsandchromatin.biomedcentral.com/counter/pdf/10.1186/s13072-024-00528-8","source":{"id":"https://openalex.org/S155115555","display_name":"Epigenetics & Chromatin","issn_l":"1756-8935","issn":["1756-8935"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Epigenetics &amp; Chromatin","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://epigeneticsandchromatin.biomedcentral.com/counter/pdf/10.1186/s13072-024-00528-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083821896","display_name":"Alexander Y. Afanasyev","orcid":"https://orcid.org/0000-0003-0489-2299","observed_orcids":["https://orcid.org/0000-0003-0489-2299"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Y. Afanasyev","raw_affiliation_strings":["Department of Biomedical Engineering and Mechanics, Virginia Tech","Department of Biomedical Engineering and Mechanics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering and Mechanics, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Biomedical Engineering and Mechanics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009924872","display_name":"Yoonjin Kim","orcid":"https://orcid.org/0000-0002-1768-0685","observed_orcids":["https://orcid.org/0000-0002-1768-0685"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoonjin Kim","raw_affiliation_strings":["Department of Computer Science, Virginia Tech","Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA"],"raw_orcid":"https://orcid.org/0000-0002-1768-0685","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011446168","display_name":"Igor S. Tolokh","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Igor S. Tolokh","raw_affiliation_strings":["Department of Computer Science, Virginia Tech","Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Computer Science, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048174967","display_name":"Igor V. Sharakhov","orcid":"https://orcid.org/0000-0003-0752-3747","observed_orcids":["https://orcid.org/0000-0003-0752-3747"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Igor V. Sharakhov","raw_affiliation_strings":["Department of Entomology, Virginia Tech","Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA"],"raw_orcid":"https://orcid.org/0000-0003-0752-3747","affiliations":[{"raw_affiliation_string":"Department of Entomology, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Entomology, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022075325","display_name":"Alexey V. Onufriev","orcid":"https://orcid.org/0000-0002-4930-6612","observed_orcids":["https://orcid.org/0000-0002-4930-6612"]},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexey V. Onufriev","raw_affiliation_strings":["Center for Soft Matter and Biological Physics, Virginia Tech","Department of Computer Science, Virginia Tech","Department of Physics, Virginia Tech","Department of Physics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA"],"raw_orcid":"https://orcid.org/0000-0002-4930-6612","affiliations":[{"raw_affiliation_string":"Center for Soft Matter and Biological Physics, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Computer Science, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Physics, Virginia Tech","institution_ids":["https://openalex.org/I859038795"]},{"raw_affiliation_string":"Department of Physics, Virginia Polytechnic Institute and State University, Blacksburg, VA, 24061, USA","institution_ids":["https://openalex.org/I859038795"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022075325","https://openalex.org/A5048174967"],"corresponding_institution_ids":["https://openalex.org/I859038795"],"apc_list":{"value":3090,"currency":"USD","value_usd":3090},"apc_paid":{"value":3090,"currency":"USD","value_usd":3090},"fwci":0.2711,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.44675121,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"17","issue":"1","first_page":"13","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11841","display_name":"Nuclear Structure and Function","score":0.5273000001907349,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11841","display_name":"Nuclear Structure and Function","score":0.5273000001907349,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.4702000021934509,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nuclear-lamina","display_name":"nuclear lamina","score":0.9559999704360962},{"id":"https://openalex.org/keywords/nuclear-envelope","display_name":"nuclear envelope","score":0.6949999928474426},{"id":"https://openalex.org/keywords/topologically-associated-domains","display_name":"topologically associating domains","score":0.9409999847412109},{"id":"https://openalex.org/keywords/lamina-associated-domains","display_name":"lamina-associated domains","score":0.8709999918937683},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.781000018119812},{"id":"https://openalex.org/keywords/chromatin-positioning","display_name":"chromatin positioning","score":0.7900000214576721},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.8790000081062317},{"id":"https://openalex.org/keywords/nuclear-organization","display_name":"nuclear organization","score":0.4320000112056732},{"id":"https://openalex.org/keywords/transcriptional-regulation","display_name":"transcriptional regulation","score":0.3370000123977661}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8188220262527466},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6737700700759888},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.5349830985069275},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4168761670589447},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.414157509803772},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3680429756641388},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3085508942604065},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D004331","descriptor_name":"Drosophila melanogaster","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034881","descriptor_name":"Nuclear Lamina","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s13072-024-00528-8","doi":"https://doi.org/10.1186/s13072-024-00528-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13072-024-00528-8","pdf_url":"https://epigeneticsandchromatin.biomedcentral.com/counter/pdf/10.1186/s13072-024-00528-8","source":{"id":"https://openalex.org/S155115555","display_name":"Epigenetics & Chromatin","issn_l":"1756-8935","issn":["1756-8935"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Epigenetics &amp; Chromatin","raw_type":"journal-article"},{"id":"doi:10.1101/2022.02.17.480932","doi":"https://doi.org/10.1101/2022.02.17.480932","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2022.02.17.480932","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2022/02/18/2022.02.17.480932.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:11071202","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11071202","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11071202/pdf/13072_2024_Article_528.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Epigenetics Chromatin","raw_type":"Text"},{"id":"pmid:38705995","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38705995","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Epigenetics & chromatin","raw_type":"Journal Article"},{"id":"pmh:oai:vtechworks.lib.vt.edu:10919/118999","doi":null,"is_oa":true,"landing_page_url":"https://hdl.handle.net/10919/118999","pdf_url":"https://vtechworks.lib.vt.edu/bitstreams/066f7838-242d-43d4-b852-a758e032289c/download","source":{"id":"https://openalex.org/S4306400248","display_name":"VTechWorks (Virginia Tech)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I859038795","host_organization_name":"Virginia Tech","host_organization_lineage":["https://openalex.org/I859038795"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article - Refereed"},{"id":"pmh:oai:doaj.org/article:7ddca1a8f3c84f8697c4f2f28c642c44","doi":null,"is_oa":true,"landing_page_url":"https://doaj.org/article/7ddca1a8f3c84f8697c4f2f28c642c44","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Epigenetics & Chromatin, Vol 17, Iss 1, Pp 1-17 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13072-024-00528-8","doi":"https://doi.org/10.1186/s13072-024-00528-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13072-024-00528-8","pdf_url":"https://epigeneticsandchromatin.biomedcentral.com/counter/pdf/10.1186/s13072-024-00528-8","source":{"id":"https://openalex.org/S155115555","display_name":"Epigenetics & Chromatin","issn_l":"1756-8935","issn":["1756-8935"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-140","russia-white-list-1"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Epigenetics &amp; Chromatin","raw_type":"journal-article"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3237427514","display_name":null,"funder_award_id":"GM14459","funder_id":"https://openalex.org/F4320337544","funder_display_name":"Office of Extramural Research, National Institutes of Health"},{"id":"https://openalex.org/G4585378706","display_name":"Functional Effects of Chromosome-Nuclear Envelope Interactions","funder_award_id":"1715207","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7625828002","display_name":null,"funder_award_id":"MCB-1715207","funder_id":"https://openalex.org/F4320332167","funder_display_name":"Directorate for Biological Sciences"},{"id":"https://openalex.org/G9000877450","display_name":"Next generation implicit solvation for atomistic modeling","funder_award_id":"R01GM144596","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337544","display_name":"Office of Extramural Research, National Institutes of Health","ror":"https://ror.org/05aq6yn88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4396675554.pdf","grobid_xml":"https://content.openalex.org/works/W4396675554.grobid-xml"},"referenced_works_count":112,"referenced_works":["https://openalex.org/W1859117663","https://openalex.org/W1887325245","https://openalex.org/W1966116114","https://openalex.org/W1968554285","https://openalex.org/W1972645430","https://openalex.org/W1973062929","https://openalex.org/W1986820862","https://openalex.org/W1992713810","https://openalex.org/W1998780591","https://openalex.org/W2007107824","https://openalex.org/W2008627600","https://openalex.org/W2010295908","https://openalex.org/W2012220598","https://openalex.org/W2018658338","https://openalex.org/W2018667441","https://openalex.org/W2021919933","https://openalex.org/W2022610139","https://openalex.org/W2023186182","https://openalex.org/W2032464841","https://openalex.org/W2034089913","https://openalex.org/W2038774969","https://openalex.org/W2039395294","https://openalex.org/W2051518111","https://openalex.org/W2053296163","https://openalex.org/W2056482755","https://openalex.org/W2057341073","https://openalex.org/W2064727535","https://openalex.org/W2067761440","https://openalex.org/W2070021921","https://openalex.org/W2073504534","https://openalex.org/W2076484837","https://openalex.org/W2080477348","https://openalex.org/W2082912595","https://openalex.org/W2085110456","https://openalex.org/W2089057627","https://openalex.org/W2090037139","https://openalex.org/W2093804830","https://openalex.org/W2098549100","https://openalex.org/W2099847814","https://openalex.org/W2100805144","https://openalex.org/W2101814873","https://openalex.org/W2103315616","https://openalex.org/W2109000324","https://openalex.org/W2111032472","https://openalex.org/W2111424853","https://openalex.org/W2112124900","https://openalex.org/W2118261741","https://openalex.org/W2121656741","https://openalex.org/W2144328273","https://openalex.org/W2154431984","https://openalex.org/W2161212572","https://openalex.org/W2162507985","https://openalex.org/W2167778358","https://openalex.org/W2169500338","https://openalex.org/W2169727662","https://openalex.org/W2170188420","https://openalex.org/W2172400873","https://openalex.org/W2174420796","https://openalex.org/W2289805503","https://openalex.org/W2430846749","https://openalex.org/W2558061074","https://openalex.org/W2594734559","https://openalex.org/W2596601694","https://openalex.org/W2614144400","https://openalex.org/W2616198309","https://openalex.org/W2625007641","https://openalex.org/W2732130203","https://openalex.org/W2736242246","https://openalex.org/W2740728714","https://openalex.org/W2761461280","https://openalex.org/W2763478649","https://openalex.org/W2765510117","https://openalex.org/W2799917943","https://openalex.org/W2800968671","https://openalex.org/W2804554615","https://openalex.org/W2884101170","https://openalex.org/W2898488853","https://openalex.org/W2898577086","https://openalex.org/W2898784229","https://openalex.org/W2914108428","https://openalex.org/W2920852097","https://openalex.org/W2922445328","https://openalex.org/W2939263494","https://openalex.org/W2945510241","https://openalex.org/W2949426619","https://openalex.org/W2951956418","https://openalex.org/W2952771490","https://openalex.org/W2961406494","https://openalex.org/W2979931451","https://openalex.org/W3007727593","https://openalex.org/W3015167195","https://openalex.org/W3030892594","https://openalex.org/W3088059405","https://openalex.org/W3111613002","https://openalex.org/W3114311814","https://openalex.org/W3120518704","https://openalex.org/W3127314690","https://openalex.org/W3145419749","https://openalex.org/W3165776564","https://openalex.org/W3175930821","https://openalex.org/W3181106681","https://openalex.org/W3194121212","https://openalex.org/W4213269979","https://openalex.org/W4223566620","https://openalex.org/W4281296108","https://openalex.org/W4285082526","https://openalex.org/W4295907576","https://openalex.org/W4313531433","https://openalex.org/W4317811480","https://openalex.org/W4362602579","https://openalex.org/W4378515073","https://openalex.org/W4378782463"],"related_works":["https://openalex.org/W4319938124","https://openalex.org/W4211031750","https://openalex.org/W6921091995","https://openalex.org/W4224917883","https://openalex.org/W2913611271","https://openalex.org/W4211219739","https://openalex.org/W2057341073","https://openalex.org/W6977581605","https://openalex.org/W2430846749","https://openalex.org/W3006009166"],"abstract_inverted_index":{"BACKGROUND:":[0],"Multiple":[1],"studies":[2],"have":[3],"demonstrated":[4],"a":[5,55,98,231],"negative":[6,177],"correlation":[7,178,182,212],"between":[8,60],"gene":[9,41,109,169,291],"expression":[10,62,110,170,292],"and":[11,77,137,185,225,240],"positioning":[12,151],"of":[13,33,39,64,67,74,80,92,102,119,124,152,168,210,230,250,254,282],"genes":[14,68,120],"at":[15,85,156],"the":[16,25,34,40,44,61,65,78,86,90,103,114,122,132,135,145,149,157,165,175,204,208,211,219,222,228,248,252,260,269,286],"nuclear":[17,22,261],"envelope":[18,262],"(NE)":[19],"lined":[20],"by":[21,161,235,278],"lamina,":[23],"but":[24],"exact":[26],"relationship":[27,59],"remains":[28],"unclear,":[29],"especially":[30],"in":[31,69,129,134,171,257,272],"light":[32],"highly":[35],"stochastic,":[36],"transient":[37],"nature":[38,91],"association":[42],"with":[43,107,131,259,288],"NE.":[45,87],"RESULTS:":[46],"In":[47],"this":[48,93],"paper,":[49],"we":[50,96,112],"ask":[51],"whether":[52],"there":[53],"is":[54,179,183,276],"causal,":[56],"systematic,":[57,265],"genome-wide":[58,108],"levels":[63,118],"groups":[66],"topologically":[70],"associating":[71],"domains":[72,193],"(TADs)":[73],"Drosophila":[75,105,153],"nuclei":[76],"probabilities":[79,123],"TADs":[81,126,155,189,196],"to":[82,127,227],"be":[83,128],"found":[84],"To":[88],"investigate":[89],"possible":[94],"relationship,":[95],"combine":[97],"coarse-grained":[99],"dynamic":[100],"model":[101],"entire":[104],"nucleus":[106,287],"data;":[111],"analyze":[113],"TAD":[115,232,283],"averaged":[116],"transcription":[117,270],"against":[121],"individual":[125],"contact":[130,258],"NE":[133,158,229],"control":[136],"lamins-depleted":[138],"nuclei.":[139],"Our":[140],"findings":[141],"demonstrate":[142],"that,":[143],"within":[144,285],"statistical":[146],"error":[147],"margin,":[148],"stochastic":[150],"melanogaster":[154],"does":[159],"not,":[160],"itself,":[162],"systematically":[163],"affect":[164],"mean":[166],"level":[167,249,271],"these":[172],"TADs,":[173,251],"while":[174],"expected":[176],"confirmed.":[180],"The":[181,274],"weak":[184],"disappears":[186],"completely":[187],"for":[188,207],"not":[190],"containing":[191,197],"lamina-associated":[192],"(LADs)":[194],"or":[195],"LADs,":[198],"considered":[199],"separately.":[200],"Verifiable":[201],"hypotheses":[202],"regarding":[203],"underlying":[205],"mechanism":[206],"presence":[209],"without":[213],"causality":[214],"are":[215,233],"discussed.":[216],"These":[217],"include":[218],"possibility":[220],"that":[221],"epigenetic":[223],"marks":[224],"affinity":[226],"determined":[234],"various":[236],"non-mutually":[237],"exclusive":[238],"mechanisms":[239],"remain":[241],"relatively":[242],"stable":[243],"during":[244],"interphase.":[245],"CONCLUSIONS:":[246],"At":[247],"probability":[253],"chromatin":[255],"being":[256],"has":[263],"no":[264],"causal":[266],"effect":[267],"on":[268],"Drosophila.":[273],"conclusion":[275],"reached":[277],"combining":[279],"model-derived":[280],"time-evolution":[281],"locations":[284],"their":[289],"experimental":[290],"levels.":[293]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1}],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2024-05-07T00:00:00"}
