{"id":"https://openalex.org/W4394518971","doi":"https://doi.org/10.6084/m9.figshare.22599479","title":"Additional file 2 of Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation","display_name":"Additional file 2 of Canalization of genome-wide transcriptional activity in Arabidopsis thaliana accessions by MET1-dependent CG methylation","publication_year":2023,"publication_date":"2023-01-01","ids":{"openalex":"https://openalex.org/W4394518971","doi":"https://doi.org/10.6084/m9.figshare.22599479"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/22599479","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Canalization_of_genome-wide_transcriptional_activity_in_Arabidopsis_thaliana_accessions_by_MET1-dependent_CG_methylation/22599479","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Canalization_of_genome-wide_transcriptional_activity_in_Arabidopsis_thaliana_accessions_by_MET1-dependent_CG_methylation/22599479","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089661390","display_name":"Thanvi Srikant","orcid":"https://orcid.org/0000-0003-1390-3236","observed_orcids":["https://orcid.org/0000-0003-1390-3236"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I4210165766","display_name":"Max Planck Institute for Biology","ror":"https://ror.org/0243gzr89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210165766"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"Srikant, Thanvi","raw_affiliation_strings":["Max Planck Institute for Biology","ETH Zurich"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Biology","institution_ids":["https://openalex.org/I4210165766"]},{"raw_affiliation_string":"ETH Zurich","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032710816","display_name":"Wei Yuan","orcid":"https://orcid.org/0000-0001-5117-3639","observed_orcids":["https://orcid.org/0000-0001-5117-3639"]},"institutions":[{"id":"https://openalex.org/I161350542","display_name":"China Three Gorges University","ror":"https://ror.org/0419nfc77","country_code":"CN","type":"education","lineage":["https://openalex.org/I161350542"]},{"id":"https://openalex.org/I4210099437","display_name":"Hubei University Of Economics","ror":"https://ror.org/012a84b59","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210099437"]},{"id":"https://openalex.org/I4210144482","display_name":"Shanghai Sixth People's Hospital","ror":"https://ror.org/049zrh188","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210144482"]},{"id":"https://openalex.org/I4210165766","display_name":"Max Planck Institute for Biology","ror":"https://ror.org/0243gzr89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210165766"]},{"id":"https://openalex.org/I61057504","display_name":"Fujian Agriculture and Forestry University","ror":"https://ror.org/04kx2sy84","country_code":"CN","type":"education","lineage":["https://openalex.org/I61057504"]}],"countries":["CN","DE"],"is_corresponding":false,"raw_author_name":"Yuan, Wei","raw_affiliation_strings":["Max Planck Institute for Biology","China Three Gorges University","Fujian Agriculture and Forestry University","Hubei University Of Economics","Shanghai Sixth People's Hospital"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Biology","institution_ids":["https://openalex.org/I4210165766"]},{"raw_affiliation_string":"China Three Gorges University","institution_ids":["https://openalex.org/I161350542"]},{"raw_affiliation_string":"Fujian Agriculture and Forestry University","institution_ids":["https://openalex.org/I61057504"]},{"raw_affiliation_string":"Hubei University Of Economics","institution_ids":["https://openalex.org/I4210099437"]},{"raw_affiliation_string":"Shanghai Sixth People's Hospital","institution_ids":["https://openalex.org/I4210144482"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036329904","display_name":"Kenneth Wayne Berendzen","orcid":"https://orcid.org/0000-0001-9870-6164","observed_orcids":["https://orcid.org/0000-0001-9870-6164"]},"institutions":[{"id":"https://openalex.org/I8087733","display_name":"University of T\u00fcbingen","ror":"https://ror.org/03a1kwz48","country_code":"DE","type":"education","lineage":["https://openalex.org/I8087733"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Berendzen, Kenneth Wayne","raw_affiliation_strings":["University of T\u00fcbingen"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of T\u00fcbingen","institution_ids":["https://openalex.org/I8087733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006188369","display_name":"Adri\u00e1n Contreras\u2010Garrido","orcid":"https://orcid.org/0000-0001-5760-9800","observed_orcids":["https://orcid.org/0000-0001-5760-9800"]},"institutions":[{"id":"https://openalex.org/I4210165766","display_name":"Max Planck Institute for Biology","ror":"https://ror.org/0243gzr89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210165766"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Contreras-Garrido, Adri\u00e1n","raw_affiliation_strings":["Max Planck Institute for Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Biology","institution_ids":["https://openalex.org/I4210165766"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006994142","display_name":"Hajk\u2010Georg Drost","orcid":"https://orcid.org/0000-0002-1567-306X","observed_orcids":["https://orcid.org/0000-0002-1567-306X"]},"institutions":[{"id":"https://openalex.org/I4210165766","display_name":"Max Planck Institute for Biology","ror":"https://ror.org/0243gzr89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210165766"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Drost, Hajk-Georg","raw_affiliation_strings":["Max Planck Institute for Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Biology","institution_ids":["https://openalex.org/I4210165766"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083249997","display_name":"Rebecca Schwab","orcid":"https://orcid.org/0000-0001-9933-9669","observed_orcids":["https://orcid.org/0000-0001-9933-9669"]},"institutions":[{"id":"https://openalex.org/I4210165766","display_name":"Max Planck Institute for Biology","ror":"https://ror.org/0243gzr89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210165766"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Schwab, Rebecca","raw_affiliation_strings":["Max Planck Institute for Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Biology","institution_ids":["https://openalex.org/I4210165766"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003440649","display_name":"Detlef Weigel","orcid":"https://orcid.org/0000-0002-2114-7963","observed_orcids":["https://orcid.org/0000-0002-2114-7963"]},"institutions":[{"id":"https://openalex.org/I4210165766","display_name":"Max Planck Institute for Biology","ror":"https://ror.org/0243gzr89","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210165766"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Weigel, Detlef","raw_affiliation_strings":["Max Planck Institute for Biology"],"raw_orcid":"https://orcid.org/0000-0002-2114-7963","affiliations":[{"raw_affiliation_string":"Max Planck Institute for Biology","institution_ids":["https://openalex.org/I4210165766"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9394999742507935,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.02019999921321869,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.007699999958276749,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-methylation","display_name":"DNA methylation","score":0.781000018119812},{"id":"https://openalex.org/keywords/met1","display_name":"MET1","score":0.7799999713897705},{"id":"https://openalex.org/keywords/cg-methylation","display_name":"CG methylation","score":0.9940000176429749},{"id":"https://openalex.org/keywords/arabidopsis-thaliana-accessions","display_name":"Arabidopsis thaliana accessions","score":0.8619999885559082},{"id":"https://openalex.org/keywords/genome-wide-transcription","display_name":"genome-wide transcription","score":0.5199999809265137},{"id":"https://openalex.org/keywords/differentially-expressed-genes","display_name":"differentially expressed genes","score":0.9629999995231628},{"id":"https://openalex.org/keywords/differentially-methylated-regions","display_name":"differentially methylated regions","score":0.9980000257492065},{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":0.9359999895095825}],"concepts":[{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.7778081893920898},{"id":"https://openalex.org/C33288867","wikidata":"https://www.wikidata.org/wiki/Q518328","display_name":"Methylation","level":3,"score":0.6878106594085693},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6430742740631104},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.6314074397087097},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.521210789680481},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5114027857780457},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36062514781951904},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.33465123176574707},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11503952741622925},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/22599479","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Canalization_of_genome-wide_transcriptional_activity_in_Arabidopsis_thaliana_accessions_by_MET1-dependent_CG_methylation/22599479","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.22599479","doi":"https://doi.org/10.6084/m9.figshare.22599479","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.22599479","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.22599479.v1","doi":"https://doi.org/10.6084/m9.figshare.22599479.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.22599479.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/22599479","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Canalization_of_genome-wide_transcriptional_activity_in_Arabidopsis_thaliana_accessions_by_MET1-dependent_CG_methylation/22599479","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":69,"referenced_works":["https://openalex.org/W1779683016","https://openalex.org/W1960142378","https://openalex.org/W1966327575","https://openalex.org/W1967655525","https://openalex.org/W1975268045","https://openalex.org/W1997270596","https://openalex.org/W2008743417","https://openalex.org/W2014299430","https://openalex.org/W2018220730","https://openalex.org/W2019525237","https://openalex.org/W2024578708","https://openalex.org/W2026343134","https://openalex.org/W2034851274","https://openalex.org/W2036681915","https://openalex.org/W2041844160","https://openalex.org/W2044890878","https://openalex.org/W2046584121","https://openalex.org/W2059979506","https://openalex.org/W2060507771","https://openalex.org/W2067151470","https://openalex.org/W2072791837","https://openalex.org/W2087923515","https://openalex.org/W2089516860","https://openalex.org/W2091722627","https://openalex.org/W2095575747","https://openalex.org/W2113643663","https://openalex.org/W2116122104","https://openalex.org/W2117211801","https://openalex.org/W2123430325","https://openalex.org/W2123921804","https://openalex.org/W2123931334","https://openalex.org/W2131374955","https://openalex.org/W2131908888","https://openalex.org/W2134485426","https://openalex.org/W2139581653","https://openalex.org/W2156183792","https://openalex.org/W2161553904","https://openalex.org/W2163003877","https://openalex.org/W2294638722","https://openalex.org/W2409013835","https://openalex.org/W2462490406","https://openalex.org/W2472874273","https://openalex.org/W2513390929","https://openalex.org/W2769091420","https://openalex.org/W2776155615","https://openalex.org/W2783502736","https://openalex.org/W2797879175","https://openalex.org/W2804344327","https://openalex.org/W2886533440","https://openalex.org/W2889928059","https://openalex.org/W2950103832","https://openalex.org/W2951690611","https://openalex.org/W2951822269","https://openalex.org/W2974856084","https://openalex.org/W2997843641","https://openalex.org/W3007462267","https://openalex.org/W3037009539","https://openalex.org/W3083393593","https://openalex.org/W3116959142","https://openalex.org/W3119486786","https://openalex.org/W3122921488","https://openalex.org/W3123999894","https://openalex.org/W3129188903","https://openalex.org/W3161052439","https://openalex.org/W3163351743","https://openalex.org/W3164610320","https://openalex.org/W4295038001","https://openalex.org/W4297128474","https://openalex.org/W6910184743"],"related_works":["https://openalex.org/W4394254807","https://openalex.org/W4394330327","https://openalex.org/W4394184153","https://openalex.org/W4312113952","https://openalex.org/W2060796153","https://openalex.org/W3207638387","https://openalex.org/W4367597731","https://openalex.org/W3178007799","https://openalex.org/W72336083","https://openalex.org/W2143994006"],"abstract_inverted_index":{"Additional":[0],"file":[1],"2:":[2],"Table":[3],"S2.":[4],"(1)":[5],"Numbers":[6,17,25],"of":[7,18,26],"DEGs,":[8,33],"DMRs":[9,34],"and":[10,35,41,45],"HV-dACRs":[11,42],"identified":[12,20,29],"across":[13,21],"all":[14,22],"samples.":[15],"(2)":[16],"DEGs":[19],"contrasts.":[23],"(3)":[24],"unique":[27],"genes":[28],"in":[30],"intersections":[31],"between":[32,39],"HV-dACRs.":[36],"(4)":[37],"Intersections":[38],"DMR":[40],"with":[43],"TEs":[44],"genes.":[46]},"counts_by_year":[],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2024-04-08T00:00:00"}