{"id":"https://openalex.org/W4394511077","doi":"https://doi.org/10.6084/m9.figshare.14404231","title":"Additional file 3 of Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes","display_name":"Additional file 3 of Comparative genomics identifies thousands of candidate structured RNAs in human microbiomes","publication_year":2021,"publication_date":"2021-01-01","ids":{"openalex":"https://openalex.org/W4394511077","doi":"https://doi.org/10.6084/m9.figshare.14404231"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/14404231","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_3_of_Comparative_genomics_identifies_thousands_of_candidate_structured_RNAs_in_human_microbiomes/14404231","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/Additional_file_3_of_Comparative_genomics_identifies_thousands_of_candidate_structured_RNAs_in_human_microbiomes/14404231","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070470672","display_name":"Brayon J. Fremin","orcid":"https://orcid.org/0000-0002-5799-8655","observed_orcids":["https://orcid.org/0000-0002-5799-8655"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brayon J. Fremin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5080667439","display_name":"Ami Siddharth Bhatt","orcid":"https://orcid.org/0000-0001-8099-2975","observed_orcids":["https://orcid.org/0000-0001-8099-2975"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bhatt, Ami S.","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-8099-2975","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5160999894142151,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5160999894142151,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.38530001044273376,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.009399999864399433,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/structured-rna","display_name":"structured RNA","score":0.9629999995231628},{"id":"https://openalex.org/keywords/human-microbiome","display_name":"human microbiome","score":0.6819999814033508},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"comparative genomics","score":0.7670000195503235},{"id":"https://openalex.org/keywords/rna-secondary-structure","display_name":"RNA secondary structure","score":0.6539999842643738}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6451293230056763},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6441009044647217},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5327568054199219},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5227351784706116},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37513625621795654},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3264444172382355},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29665249586105347},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23474019765853882},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1867256760597229}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/14404231","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_3_of_Comparative_genomics_identifies_thousands_of_candidate_structured_RNAs_in_human_microbiomes/14404231","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.14404231","doi":"https://doi.org/10.6084/m9.figshare.14404231","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.14404231","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.14404231.v1","doi":"https://doi.org/10.6084/m9.figshare.14404231.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.14404231.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/14404231","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_3_of_Comparative_genomics_identifies_thousands_of_candidate_structured_RNAs_in_human_microbiomes/14404231","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394486837","https://openalex.org/W4394103680","https://openalex.org/W6902002092","https://openalex.org/W3155760473","https://openalex.org/W7098829308","https://openalex.org/W7100640952","https://openalex.org/W4388461417","https://openalex.org/W2122914162","https://openalex.org/W7096487534","https://openalex.org/W7096548755"],"abstract_inverted_index":{"Additional":[0],"file":[1],"3:":[2],"Table":[3],"S3.":[4],"Candidate":[5],"structured":[6,17,29,49,84],"RNAs":[7,18,50,85],"that":[8,43],"overlap":[9,44],"or":[10,61],"are":[11,19,34,59],"palindromic.":[12],"We":[13],"list":[14,56],"which":[15,57,64],"candidate":[16,28,48,83],"found":[20],"on":[21],"the":[22,38,45,68,72,79],"opposing":[23,76],"strand":[24],"of":[25],"a":[26],"different":[27],"RNA.":[30],"All":[31],"pairwise":[32],"overlaps":[33],"provided":[35],"both":[36],"for":[37,78],"3161":[39,80],"and":[40,81],"2022":[41,82],"(those":[42],"nr":[46],"database)":[47],"as":[51,86],"separate":[52,87],"tabs.":[53,88],"Additionally,":[54],"we":[55],"structures":[58],"palindromic,":[60],"those":[62],"in":[63,75],"cmsearch":[65],"[14]":[66],"predicts":[67],"same":[69,73],"structure":[70],"overlapping":[71],"region":[74],"orientations":[77]},"counts_by_year":[],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2024-04-08T00:00:00"}
