{"id":"https://openalex.org/W4394447604","doi":"https://doi.org/10.6084/m9.figshare.21382990","title":"Additional file 2 of Specific metabolites drive the deterministic assembly of diseased rhizosphere microbiome through weakening microbial degradation of autotoxin","display_name":"Additional file 2 of Specific metabolites drive the deterministic assembly of diseased rhizosphere microbiome through weakening microbial degradation of autotoxin","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4394447604","doi":"https://doi.org/10.6084/m9.figshare.21382990"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/21382990","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Specific_metabolites_drive_the_deterministic_assembly_of_diseased_rhizosphere_microbiome_through_weakening_microbial_degradation_of_autotoxin/21382990","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Specific_metabolites_drive_the_deterministic_assembly_of_diseased_rhizosphere_microbiome_through_weakening_microbial_degradation_of_autotoxin/21382990","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011088620","display_name":"Tao Wen","orcid":"https://orcid.org/0000-0003-0102-0487","observed_orcids":["https://orcid.org/0000-0003-0102-0487"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen, Tao","raw_affiliation_strings":["Nanjing Agricultural University","Chinese Academy of Medical Sciences & Peking Union Medical College"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]},{"raw_affiliation_string":"Chinese Academy of Medical Sciences & Peking Union Medical College","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065441244","display_name":"Penghao Xie","orcid":"https://orcid.org/0000-0002-1607-0092","observed_orcids":["https://orcid.org/0000-0002-1607-0092"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xie, Penghao","raw_affiliation_strings":["Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055007401","display_name":"C. Ryan Penton","orcid":"https://orcid.org/0000-0001-9166-7852","observed_orcids":["https://orcid.org/0000-0001-9166-7852"]},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Penton, C. Ryan","raw_affiliation_strings":["Arizona State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arizona State University","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038929042","display_name":"Lauren E. Hale","orcid":"https://orcid.org/0000-0002-2574-2225","observed_orcids":["https://orcid.org/0000-0002-2574-2225"]},"institutions":[{"id":"https://openalex.org/I2801410363","display_name":"Stony Brook University Hospital","ror":"https://ror.org/05wyq9e07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801410363","https://openalex.org/I4210102711","https://openalex.org/I59553526"]},{"id":"https://openalex.org/I4210090748","display_name":"San Joaquin Valley Agricultural Sciences Center","ror":"https://ror.org/009xkwz08","country_code":"US","type":"facility","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210090748","https://openalex.org/I4210094889"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hale, Lauren","raw_affiliation_strings":["Stony Brook University Hospital","San Joaquin Valley Agricultural Sciences Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stony Brook University Hospital","institution_ids":["https://openalex.org/I2801410363"]},{"raw_affiliation_string":"San Joaquin Valley Agricultural Sciences Center","institution_ids":["https://openalex.org/I4210090748"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042933034","display_name":"Linda S. Thomashow","orcid":"https://orcid.org/0000-0002-0809-3606","observed_orcids":["https://orcid.org/0000-0002-0809-3606"]},"institutions":[{"id":"https://openalex.org/I4210094889","display_name":"Agricultural Research Service - Pacific West Area","ror":"https://ror.org/00qv2zm13","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210094889"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomashow, Linda S.","raw_affiliation_strings":["Agricultural Research Service - Pacific West Area"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Agricultural Research Service - Pacific West Area","institution_ids":["https://openalex.org/I4210094889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018609102","display_name":"Shengdie Yang","orcid":"https://orcid.org/0000-0003-3270-2288","observed_orcids":["https://orcid.org/0000-0003-3270-2288"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang, Shengdie","raw_affiliation_strings":["Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058505053","display_name":"Zhexu Ding","orcid":"https://orcid.org/0009-0006-4779-3863","observed_orcids":["https://orcid.org/0009-0006-4779-3863"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ding, Zhexu","raw_affiliation_strings":["Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031934969","display_name":"Yaqi Su","orcid":"https://orcid.org/0009-0000-5807-0077","observed_orcids":["https://orcid.org/0009-0000-5807-0077"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Su, Yaqi","raw_affiliation_strings":["Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066660351","display_name":"Jun Jie Yuan","orcid":"https://orcid.org/0000-0002-8265-0239","observed_orcids":["https://orcid.org/0000-0002-8265-0239"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]},{"id":"https://openalex.org/I2801241159","display_name":"The Heart Research Institute","ror":"https://ror.org/046fa4y88","country_code":"AU","type":"facility","lineage":["https://openalex.org/I2801241159"]}],"countries":["AU","CN"],"is_corresponding":false,"raw_author_name":"Yuan, Jun","raw_affiliation_strings":["The Heart Research Institute","Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Heart Research Institute","institution_ids":["https://openalex.org/I2801241159"]},{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067482090","display_name":"Qirong Shen","orcid":"https://orcid.org/0000-0002-5662-9620","observed_orcids":["https://orcid.org/0000-0002-5662-9620","https://orcid.org/0000-0002-4939-2506"]},"institutions":[{"id":"https://openalex.org/I119454577","display_name":"Nanjing Agricultural University","ror":"https://ror.org/05td3s095","country_code":"CN","type":"education","lineage":["https://openalex.org/I119454577"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shen, Qirong","raw_affiliation_strings":["Nanjing Agricultural University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nanjing Agricultural University","institution_ids":["https://openalex.org/I119454577"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.8550000190734863,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.8550000190734863,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12058","display_name":"Allelopathy and phytotoxic interactions","score":0.13819999992847443,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12660","display_name":"Plant Disease Management Techniques","score":0.0010000000474974513,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rhizosphere-microbiome","display_name":"rhizosphere microbiome","score":0.953000009059906},{"id":"https://openalex.org/keywords/plant-disease","display_name":"plant disease","score":0.7080000042915344},{"id":"https://openalex.org/keywords/soil-metabolites","display_name":"soil metabolites","score":0.7099999785423279},{"id":"https://openalex.org/keywords/microbial-degradation","display_name":"microbial degradation","score":0.6370000243186951},{"id":"https://openalex.org/keywords/autotoxins","display_name":"autotoxins","score":0.9269999861717224},{"id":"https://openalex.org/keywords/metabolic-biomarkers","display_name":"metabolic biomarkers","score":0.6620000004768372},{"id":"https://openalex.org/keywords/soil-chemical-properties","display_name":"soil chemical properties","score":0.6880000233650208}],"concepts":[{"id":"https://openalex.org/C86626682","wikidata":"https://www.wikidata.org/wiki/Q1124578","display_name":"Rhizosphere","level":3,"score":0.8945446610450745},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.778687596321106},{"id":"https://openalex.org/C2779679103","wikidata":"https://www.wikidata.org/wiki/Q5251805","display_name":"Degradation (telecommunications)","level":2,"score":0.7170567512512207},{"id":"https://openalex.org/C196222841","wikidata":"https://www.wikidata.org/wiki/Q6839252","display_name":"Microbial biodegradation","level":4,"score":0.5084308981895447},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4056961238384247},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3780827522277832},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.35860878229141235},{"id":"https://openalex.org/C107872376","wikidata":"https://www.wikidata.org/wiki/Q321355","display_name":"Environmental chemistry","level":1,"score":0.34707558155059814},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.29045820236206055},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.21036255359649658},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.20460733771324158},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.14749160408973694},{"id":"https://openalex.org/C175605896","wikidata":"https://www.wikidata.org/wiki/Q39833","display_name":"Microorganism","level":3,"score":0.12012407183647156},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/21382990","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Specific_metabolites_drive_the_deterministic_assembly_of_diseased_rhizosphere_microbiome_through_weakening_microbial_degradation_of_autotoxin/21382990","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.21382990","doi":"https://doi.org/10.6084/m9.figshare.21382990","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.21382990","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.21382990.v1","doi":"https://doi.org/10.6084/m9.figshare.21382990.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.21382990.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/21382990","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_2_of_Specific_metabolites_drive_the_deterministic_assembly_of_diseased_rhizosphere_microbiome_through_weakening_microbial_degradation_of_autotoxin/21382990","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[{"score":0.4390000104904175,"id":"https://metadata.un.org/sdg/15","display_name":"Life on land"}],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W6920962128","https://openalex.org/W4307135247","https://openalex.org/W4407363251","https://openalex.org/W2736550466","https://openalex.org/W4393235599","https://openalex.org/W6943492653","https://openalex.org/W7134853915","https://openalex.org/W4401246680","https://openalex.org/W1004058023","https://openalex.org/W4320917349"],"abstract_inverted_index":{"Additional":[0],"file":[1],"2:":[2],"Supplementary":[3,14,27,43,68,79,91],"Table":[4,15,28,44,69,80,92],"1.":[5],"Sampling":[6],"information":[7],"for":[8,20,38,61,65,84],"diseased":[9],"and":[10,101],"healthy":[11],"rhizosphere":[12,89],"soils.":[13],"2.":[16],"Basic":[17],"sequencing":[18],"data":[19],"other":[21],"reports":[22],"integrated":[23],"into":[24],"our":[25],"study.":[26],"3.":[29],"Soil":[30],"chemical":[31,77],"properties":[32],"of":[33,72,88,95],"the":[34,39,52,55,104,109,114],"two":[35,115],"soils":[36],"used":[37],"conditioned":[40],"soil":[41],"experiment.":[42],"4.":[45],"Selected":[46],"different":[47],"threshold":[48,60],"(thresholda/b:":[49],"represent":[50],"selected":[51],"metabolites":[53,73,97],"with":[54],"relative":[56],"abundance":[57],"greater/less":[58],"than":[59],"model":[62,66],"1/model2":[63],"construction)":[64],"construction.":[67],"5.":[70],"Grouping":[71],"according":[74],"to":[75],"their":[76],"properties.":[78],"6.":[81],"Pairwise":[82],"Adonis":[83],"multiple":[85],"pairwise":[86],"comparisons":[87],"metabolites.":[90],"7.":[93],"Total":[94],"46":[96],"were":[98],"significant":[99],"difference":[100],"also":[102],"in":[103],"best":[105],"biomarkers":[106],"identified":[107],"by":[108],"random":[110],"forest":[111],"classifier":[112],"between":[113],"groups.":[116]},"counts_by_year":[],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2024-04-08T00:00:00"}