{"id":"https://openalex.org/W4394407364","doi":"https://doi.org/10.6084/m9.figshare.6362963","title":"Additional file 10: of A Comprehensive Approach to Sequence-oriented IsomiR annotation (CASMIR): demonstration with IsomiR profiling in colorectal neoplasia","display_name":"Additional file 10: of A Comprehensive Approach to Sequence-oriented IsomiR annotation (CASMIR): demonstration with IsomiR profiling in colorectal neoplasia","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W4394407364","doi":"https://doi.org/10.6084/m9.figshare.6362963"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/6362963","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_10_of_A_Comprehensive_Approach_to_Sequence-oriented_IsomiR_annotation_CASMIR_demonstration_with_IsomiR_profiling_in_colorectal_neoplasia/6362963","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/Additional_file_10_of_A_Comprehensive_Approach_to_Sequence-oriented_IsomiR_annotation_CASMIR_demonstration_with_IsomiR_profiling_in_colorectal_neoplasia/6362963","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109180455","display_name":"Chung Wu","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wu, Chung","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086665939","display_name":"Jared M. Evans","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Evans, Jared","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108086435","display_name":"Shengbing Huang","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shengbing Huang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038158795","display_name":"Douglas W. Mahoney","orcid":"https://orcid.org/0000-0001-5144-0645","observed_orcids":["https://orcid.org/0000-0001-5144-0645"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mahoney, Douglas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077043597","display_name":"Brian A. Dukek","orcid":"https://orcid.org/0000-0001-7986-647X","observed_orcids":["https://orcid.org/0000-0001-7986-647X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dukek, Brian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Taylor, William","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Taylor, William","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038050880","display_name":"Tracy C. Yab","orcid":"https://orcid.org/0000-0002-9116-8428","observed_orcids":["https://orcid.org/0000-0002-9116-8428"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yab, Tracy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049580044","display_name":"Thomas C. Smyrk","orcid":"https://orcid.org/0000-0001-6194-7853","observed_orcids":["https://orcid.org/0000-0001-6194-7853"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Smyrk, Thomas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101601959","display_name":"Jin Jen","orcid":"https://orcid.org/0000-0002-8790-9836","observed_orcids":["https://orcid.org/0000-0002-8790-9836"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jen, Jin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017521990","display_name":"John B. Kisiel","orcid":"https://orcid.org/0000-0002-3840-5324","observed_orcids":["https://orcid.org/0000-0002-3840-5324"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kisiel, John","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5078991711","display_name":"David A. Ahlquist","orcid":"https://orcid.org/0000-0002-0652-0758","observed_orcids":["https://orcid.org/0000-0002-0652-0758"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ahlquist, David","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9545999765396118,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9545999765396118,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.01769999973475933,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.005100000184029341,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/isomirs","display_name":"isomiRs","score":0.8029999732971191},{"id":"https://openalex.org/keywords/colorectal-neoplasms","display_name":"colorectal neoplasia","score":0.9950000047683716},{"id":"https://openalex.org/keywords/the-cancer-genome-atlas","display_name":"TCGA","score":0.8029999732971191},{"id":"https://openalex.org/keywords/reproducibility","display_name":"reproducibility","score":0.8930000066757202},{"id":"https://openalex.org/keywords/mirna-sequencing","display_name":"miRNA sequencing","score":0.527999997138977}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6950140595436096},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6091082692146301},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.46885308623313904},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4555368423461914},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.31448793411254883},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.19073843955993652},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11066442728042603}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/6362963","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_10_of_A_Comprehensive_Approach_to_Sequence-oriented_IsomiR_annotation_CASMIR_demonstration_with_IsomiR_profiling_in_colorectal_neoplasia/6362963","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.6362963","doi":"https://doi.org/10.6084/m9.figshare.6362963","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.6362963","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.6362963.v1","doi":"https://doi.org/10.6084/m9.figshare.6362963.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.6362963.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/6362963","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_10_of_A_Comprehensive_Approach_to_Sequence-oriented_IsomiR_annotation_CASMIR_demonstration_with_IsomiR_profiling_in_colorectal_neoplasia/6362963","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8199999928474426}],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394517872","https://openalex.org/W4394321526","https://openalex.org/W4394211822","https://openalex.org/W4380052291","https://openalex.org/W2567295518","https://openalex.org/W4393076320","https://openalex.org/W3032284422","https://openalex.org/W2797749213","https://openalex.org/W6930636504","https://openalex.org/W4317777587"],"abstract_inverted_index":{"Table":[0],"S8.":[1],"Reproducibility":[2],"of":[3],"isomiRs":[4],"identified":[5],"in":[6,14],"TCGA":[7],"dataset":[8,16],"using":[9,17],"an":[10],"independent":[11],"pipeline":[12],"and":[13],"our":[15],"CASMIR.":[18],"(XLSX":[19],"111\u00c2":[20],"kb)":[21]},"counts_by_year":[],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2024-04-08T00:00:00"}
