{"id":"https://openalex.org/W4394374306","doi":"https://doi.org/10.6084/m9.figshare.c.3657074_d6","title":"MOESM5 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism","display_name":"MOESM5 of Improved growth rate in Clostridium thermocellum hydrogenase mutant via perturbed sulfur metabolism","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W4394374306","doi":"https://doi.org/10.6084/m9.figshare.c.3657074_d6"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/4516484","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/MOESM5_of_Improved_growth_rate_in_Clostridium_thermocellum_hydrogenase_mutant_via_perturbed_sulfur_metabolism/4516484","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/MOESM5_of_Improved_growth_rate_in_Clostridium_thermocellum_hydrogenase_mutant_via_perturbed_sulfur_metabolism/4516484","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036064704","display_name":"Ranjita Biswas","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ranjita Biswas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036696755","display_name":"Charlotte M. Wilson","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wilson, Charlotte","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022944441","display_name":"Richard J. Giannone","orcid":"https://orcid.org/0000-0001-8551-0138","observed_orcids":["https://orcid.org/0000-0001-8551-0138"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Giannone, Richard","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002003335","display_name":"Dawn M. Klingeman","orcid":"https://orcid.org/0000-0002-4307-2560","observed_orcids":["https://orcid.org/0000-0002-4307-2560"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klingeman, Dawn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040730961","display_name":"Thomas Rydzak","orcid":"https://orcid.org/0000-0002-5176-3222","observed_orcids":["https://orcid.org/0000-0002-5176-3222"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rydzak, Thomas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035410248","display_name":"Manesh B. Shah","orcid":"https://orcid.org/0000-0003-1436-5345","observed_orcids":["https://orcid.org/0000-0003-1436-5345"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Manesh Shah","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002596998","display_name":"Robert L. Hettich","orcid":"https://orcid.org/0000-0001-7708-786X","observed_orcids":["https://orcid.org/0000-0001-7708-786X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hettich, Robert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019407143","display_name":"Steven D. Brown","orcid":"https://orcid.org/0000-0002-9281-3898","observed_orcids":["https://orcid.org/0000-0002-9281-3898"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Brown, Steven","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5088190837","display_name":"Adam M. Guss","orcid":"https://orcid.org/0000-0001-5823-5329","observed_orcids":["https://orcid.org/0000-0001-5823-5329"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guss, Adam","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.40380001068115234,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11626","display_name":"Metalloenzymes and iron-sulfur proteins","score":0.40380001068115234,"subfield":{"id":"https://openalex.org/subfields/2105","display_name":"Renewable Energy, Sustainability and the Environment"},"field":{"id":"https://openalex.org/fields/21","display_name":"Energy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10284","display_name":"Anaerobic Digestion and Biogas Production","score":0.33570000529289246,"subfield":{"id":"https://openalex.org/subfields/2215","display_name":"Building and Construction"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.16110000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/clostridium-thermocellum","display_name":"Clostridium thermocellum","score":1.0},{"id":"https://openalex.org/keywords/hydrogenase-mutants","display_name":"hydrogenase mutants","score":0.8659999966621399},{"id":"https://openalex.org/keywords/hydg","display_name":"HydG","score":0.7879999876022339},{"id":"https://openalex.org/keywords/ech","display_name":"ECH","score":0.6380000114440918},{"id":"https://openalex.org/keywords/sulfur-metabolism","display_name":"sulfur metabolism","score":0.8849999904632568},{"id":"https://openalex.org/keywords/acetate","display_name":"acetate","score":0.878000020980835},{"id":"https://openalex.org/keywords/differential-gene-expression","display_name":"differential gene expression","score":0.968999981880188},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.8859999775886536},{"id":"https://openalex.org/keywords/growth-rate","display_name":"growth rate","score":0.656000018119812},{"id":"https://openalex.org/keywords/hydrogen-production","display_name":"hydrogen production","score":0.5109999775886536}],"concepts":[{"id":"https://openalex.org/C2776061948","wikidata":"https://www.wikidata.org/wiki/Q3681172","display_name":"Clostridium thermocellum","level":4,"score":0.9794456958770752},{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.64817214012146},{"id":"https://openalex.org/C518881349","wikidata":"https://www.wikidata.org/wiki/Q682","display_name":"Sulfur","level":2,"score":0.6085008978843689},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.5829311609268188},{"id":"https://openalex.org/C79115784","wikidata":"https://www.wikidata.org/wiki/Q424135","display_name":"Hydrogenase","level":3,"score":0.5583930611610413},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.46403929591178894},{"id":"https://openalex.org/C65192284","wikidata":"https://www.wikidata.org/wiki/Q7636225","display_name":"Sulfur metabolism","level":3,"score":0.4548436403274536},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.4353974163532257},{"id":"https://openalex.org/C2781092032","wikidata":"https://www.wikidata.org/wiki/Q327663","display_name":"Clostridium","level":3,"score":0.4332350492477417},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3242149353027344},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2373412847518921},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.22217592597007751},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.2009350061416626},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07424396276473999},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.06544339656829834},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.05600348114967346},{"id":"https://openalex.org/C141603559","wikidata":"https://www.wikidata.org/wiki/Q410324","display_name":"Cellulase","level":3,"score":0.04181545972824097}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/4516484","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/MOESM5_of_Improved_growth_rate_in_Clostridium_thermocellum_hydrogenase_mutant_via_perturbed_sulfur_metabolism/4516484","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.c.3657074_d6","doi":"https://doi.org/10.6084/m9.figshare.c.3657074_d6","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.3657074_d6","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.c.3657074_d6.v1","doi":"https://doi.org/10.6084/m9.figshare.c.3657074_d6.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.3657074_d6.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/4516484","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/MOESM5_of_Improved_growth_rate_in_Clostridium_thermocellum_hydrogenase_mutant_via_perturbed_sulfur_metabolism/4516484","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7136088042","https://openalex.org/W4394332883","https://openalex.org/W4394406474","https://openalex.org/W2560878440","https://openalex.org/W2091045173","https://openalex.org/W2026361863","https://openalex.org/W2488167288","https://openalex.org/W3088854433","https://openalex.org/W2071002751","https://openalex.org/W2039306713"],"abstract_inverted_index":{"Additional":[0],"file":[1],"5:":[2],"Data":[3],"set":[4],"S3.":[5],"Differential":[6,9],"gene":[7,10,46,68],"expression.":[8],"expression":[11],"expressed":[12],"as":[13],"a":[14],"ratio":[15,61],"between":[16,62],"the":[17,28,36,63],"\u0394hydG,":[18],"\u2206hydG":[19],"\u2206ech,":[20],"and":[21,55],"wild-type":[22],"strains":[23],"of":[24,32,66],"C.":[25],"thermocellum":[26],"in":[27],"presence":[29],"or":[30],"absence":[31],"acetate.":[33],"Included":[34],"is":[35],"False":[37],"Discovery":[38],"Rate":[39],"(FDR)":[40],"adjusted":[41,51],"p":[42,52],"value":[43,53],"for":[44],"each":[45],"comparison":[47],"with":[48],"an":[49],"FDR":[50],"<0.05":[54],"greater":[56],"than":[57],"\u00b11":[58],"log2":[59],"transformed":[60],"conditions":[64],"indicative":[65],"altered":[67],"regulation.":[69]},"counts_by_year":[],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2024-04-08T00:00:00"}
