{"id":"https://openalex.org/W4394255367","doi":"https://doi.org/10.6084/m9.figshare.9937670","title":"MOESM6 of A machine learning-based service for estimating quality of genomes using PATRIC","display_name":"MOESM6 of A machine learning-based service for estimating quality of genomes using PATRIC","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W4394255367","doi":"https://doi.org/10.6084/m9.figshare.9937670"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/9937670","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/MOESM6_of_A_machine_learning-based_service_for_estimating_quality_of_genomes_using_PATRIC/9937670","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","is_traditional":false,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/MOESM6_of_A_machine_learning-based_service_for_estimating_quality_of_genomes_using_PATRIC/9937670","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026370684","display_name":"Bruce Parrello","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Parrello, Bruce","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000388637","display_name":"Rory Butler","orcid":"https://orcid.org/0000-0003-1667-1709","observed_orcids":["https://orcid.org/0000-0003-1667-1709"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Butler, Rory","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069825511","display_name":"Philippe Chlenski","orcid":"https://orcid.org/0000-0002-2951-4385","observed_orcids":["https://orcid.org/0000-0002-2951-4385"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chlenski, Philippe","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015210172","display_name":"Robert Olson","orcid":"https://orcid.org/0000-0001-9751-4734","observed_orcids":["https://orcid.org/0000-0001-9751-4734"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Olson, Robert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073549627","display_name":"Jamie Overbeek","orcid":"https://orcid.org/0009-0001-5806-087X","observed_orcids":["https://orcid.org/0009-0001-5806-087X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Overbeek, Jamie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066616906","display_name":"Gordon D. Pusch","orcid":"https://orcid.org/0000-0003-1471-0401","observed_orcids":["https://orcid.org/0000-0003-1471-0401"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pusch, Gordon D.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036781580","display_name":"Veronika Vonstein","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vonstein, Veronika","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5085138988","display_name":"Ross Overbeek","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Overbeek, Ross","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-quality-assessment","display_name":"genome quality assessment","score":0.9330000281333923},{"id":"https://openalex.org/keywords/patric","display_name":"PATRIC","score":0.7480000257492065},{"id":"https://openalex.org/keywords/genome-completeness","display_name":"genome completeness","score":0.7889999747276306},{"id":"https://openalex.org/keywords/genome-contamination","display_name":"genome contamination","score":0.7480000257492065},{"id":"https://openalex.org/keywords/phenylalanine-trna-synthetase","display_name":"phenylalanine-tRNA synthetase","score":0.9100000262260437},{"id":"https://openalex.org/keywords/machine-learning","display_name":"machine learning","score":0.593999981880188}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.553825318813324},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.4451950192451477},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.40735989809036255},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36648768186569214},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3495509624481201},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.06276631355285645},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/9937670","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/MOESM6_of_A_machine_learning-based_service_for_estimating_quality_of_genomes_using_PATRIC/9937670","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.9937670","doi":"https://doi.org/10.6084/m9.figshare.9937670","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.9937670","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.9937670.v1","doi":"https://doi.org/10.6084/m9.figshare.9937670.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.9937670.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/9937670","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/MOESM6_of_A_machine_learning-based_service_for_estimating_quality_of_genomes_using_PATRIC/9937670","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394544119","https://openalex.org/W2977580499","https://openalex.org/W4394200462","https://openalex.org/W4394363109","https://openalex.org/W2189472024","https://openalex.org/W3154442102","https://openalex.org/W6929240598","https://openalex.org/W4242380825","https://openalex.org/W4385302518","https://openalex.org/W3179293577"],"abstract_inverted_index":{"Additional":[0],"file":[1],"6":[2],"PATRIC":[3,25],"quality":[4],"report.":[5],"This":[6],"is":[7],"a":[8,67],"report":[9],"of":[10,70,79],"EvalCon":[11,30],"and":[12,41,58],"EvalG":[13,34,37],"scores":[14],"for":[15,86,89],"all":[16],"public":[17],"genomes":[18],"in":[19,22],"PATRIC.":[20],"Columns,":[21],"order,":[23],"are:":[24],"genome":[26,28],"ID,":[27],"name,":[29],"fine":[31,55],"consistency":[32,56],"score,":[33,36,39],"completeness":[35,60],"contamination":[38,52],"\u201cGood,\u201d":[40],"\u201cGood":[42],"Seed.\u201d":[43],"Genomes":[44,62],"marked":[45,63],"\u201cgood\u201d":[46],"meet":[47],"the":[48,71],"following":[49],"criteria:":[50],"(1)":[51],"\u226410%,":[53],"(2)":[54],"\u226587%,":[57],"(3)":[59],"\u226580%.":[61],"\u201cgood":[64],"seed\u201d":[65],"have":[66],"single":[68],"copy":[69],"phenylalanine":[72],"tRNA":[73],"synthetase,":[74],"alpha":[75],"subunit":[76],"(pheS)":[77],"gene":[78],"appropriate":[80],"length":[81],"(209\u2013405":[82],"amino":[83],"acid":[84],"residues":[85],"bacteria,":[87],"293-652":[88],"archaea).":[90]},"counts_by_year":[],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2024-04-08T00:00:00"}