{"id":"https://openalex.org/W4394253687","doi":"https://doi.org/10.6084/m9.figshare.7006805","title":"Additional file 7: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation","display_name":"Additional file 7: of Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W4394253687","doi":"https://doi.org/10.6084/m9.figshare.7006805"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/7006805","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_7_of_Nascent_RNA_sequencing_analysis_provides_insights_into_enhancer-mediated_gene_regulation/7006805","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","is_traditional":false,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/Additional_file_7_of_Nascent_RNA_sequencing_analysis_provides_insights_into_enhancer-mediated_gene_regulation/7006805","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100378578","display_name":"Jing Wang","orcid":"https://orcid.org/0000-0002-7566-1212","observed_orcids":["https://orcid.org/0000-0002-7566-1212","https://orcid.org/0000-0002-9272-5628"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wang, Jing","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Zhao, Yue","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhao, Yue","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082973092","display_name":"Xiaofan Zhou","orcid":"https://orcid.org/0000-0002-2879-6317","observed_orcids":["https://orcid.org/0000-0002-2879-6317"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhou, Xiaofan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068430189","display_name":"Scott W. Hiebert","orcid":"https://orcid.org/0000-0001-5621-1454","observed_orcids":["https://orcid.org/0000-0001-5621-1454"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hiebert, Scott","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014353485","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0002-0596-5579","observed_orcids":["https://orcid.org/0000-0002-0596-5579"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Qi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5062656698","display_name":"Yu Shyr","orcid":"https://orcid.org/0000-0003-2086-9670","observed_orcids":["https://orcid.org/0000-0003-2086-9670"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shyr, Yu","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enhancers","display_name":"enhancers","score":0.7300000190734863},{"id":"https://openalex.org/keywords/enhancer-identification","display_name":"enhancer identification","score":0.7590000033378601},{"id":"https://openalex.org/keywords/nascent-rna-sequencing","display_name":"nascent RNA sequencing","score":0.7889999747276306},{"id":"https://openalex.org/keywords/pro-seq","display_name":"PRO-seq","score":0.9409999847412109},{"id":"https://openalex.org/keywords/hdac3","display_name":"HDAC3","score":0.777999997138977},{"id":"https://openalex.org/keywords/gene-expression-regulation","display_name":"gene expression regulation","score":0.6269999742507935},{"id":"https://openalex.org/keywords/mouse-liver","display_name":"mouse liver","score":0.8550000190734863}],"concepts":[{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.7911725044250488},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5923502445220947},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5745943188667297},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5358433127403259},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5291614532470703},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5049956440925598},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4400767982006073},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4351133108139038},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2301579713821411},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.14651522040367126}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/7006805","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_7_of_Nascent_RNA_sequencing_analysis_provides_insights_into_enhancer-mediated_gene_regulation/7006805","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.7006805","doi":"https://doi.org/10.6084/m9.figshare.7006805","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.7006805","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.7006805.v1","doi":"https://doi.org/10.6084/m9.figshare.7006805.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.7006805.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/7006805","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_7_of_Nascent_RNA_sequencing_analysis_provides_insights_into_enhancer-mediated_gene_regulation/7006805","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394084883","https://openalex.org/W4394498719","https://openalex.org/W2888181943","https://openalex.org/W4394344119","https://openalex.org/W4393554500","https://openalex.org/W2080157838","https://openalex.org/W4411314166","https://openalex.org/W3100166045","https://openalex.org/W4412713831","https://openalex.org/W4415638080"],"abstract_inverted_index":{"Table":[0],"S3.":[1],"Identified":[2],"enhancers":[3],"using":[4],"Hdac3":[5],"WT":[6],"and":[7],"KO":[8],"PRO-seq":[9],"data":[10],"derived":[11],"from":[12],"the":[13],"mouse":[14],"liver.":[15],"(XLSX":[16],"381":[17],"kb)":[18]},"counts_by_year":[],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2024-04-08T00:00:00"}
