{"id":"https://openalex.org/W4394249191","doi":"https://doi.org/10.6084/m9.figshare.17981933","title":"Additional file 3 of STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families","display_name":"Additional file 3 of STRIDE: a command-line HMM-based identifier and sub-classifier of Plasmodium falciparum RIFIN and STEVOR variant surface antigen families","publication_year":2022,"publication_date":"2022-01-01","ids":{"openalex":"https://openalex.org/W4394249191","doi":"https://doi.org/10.6084/m9.figshare.17981933"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/17981933","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_3_of_STRIDE_a_command-line_HMM-based_identifier_and_sub-classifier_of_Plasmodium_falciparum_RIFIN_and_STEVOR_variant_surface_antigen_families/17981933","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/Additional_file_3_of_STRIDE_a_command-line_HMM-based_identifier_and_sub-classifier_of_Plasmodium_falciparum_RIFIN_and_STEVOR_variant_surface_antigen_families/17981933","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Zhou, Albert E.","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhou, Albert E.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064270563","display_name":"Zalak Shah","orcid":"https://orcid.org/0000-0002-7667-1025","observed_orcids":["https://orcid.org/0000-0002-7667-1025"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shah, Zalak V.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063071187","display_name":"Katie R. Bradwell","orcid":"https://orcid.org/0000-0002-9730-1808","observed_orcids":["https://orcid.org/0000-0002-9730-1808"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bradwell, Katie R.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039491087","display_name":"James B. Munro","orcid":"https://orcid.org/0000-0003-3067-6434","observed_orcids":["https://orcid.org/0000-0003-3067-6434"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Munro, James B.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073817969","display_name":"Andrea A. Berry","orcid":"https://orcid.org/0000-0003-3140-3868","observed_orcids":["https://orcid.org/0000-0003-3140-3868"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Berry, Andrea A.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038574644","display_name":"David Serre","orcid":"https://orcid.org/0000-0002-2446-9095","observed_orcids":["https://orcid.org/0000-0002-2446-9095"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Serre, David","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011546643","display_name":"Shannon Takala\u2010Harrison","orcid":"https://orcid.org/0000-0003-4674-8500","observed_orcids":["https://orcid.org/0000-0003-4674-8500"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Takala-Harrison, Shannon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103172233","display_name":"Timothy D. O\u2019Connor","orcid":"https://orcid.org/0000-0002-0276-1896","observed_orcids":["https://orcid.org/0000-0002-0276-1896","https://orcid.org/0000-0001-5413-6526"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"O\u2019Connor, Timothy D.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000332288","display_name":"Joana Caldeira Fernandes da Silva","orcid":"https://orcid.org/0000-0001-6502-7026","observed_orcids":["https://orcid.org/0000-0001-6502-7026"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Silva, Joana C.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5026256846","display_name":"Mark A. Travassos","orcid":"https://orcid.org/0000-0002-6045-3322","observed_orcids":["https://orcid.org/0000-0002-6045-3322"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Travassos, Mark A.","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6045-3322","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10091","display_name":"Malaria Research and Control","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10091","display_name":"Malaria Research and Control","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.012900000438094139,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12178","display_name":"Bird parasitology and diseases","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plasmodium-falciparum","display_name":"Plasmodium falciparum","score":0.9869999885559082},{"id":"https://openalex.org/keywords/rifin","display_name":"RIFIN","score":0.9409999847412109},{"id":"https://openalex.org/keywords/stevor","display_name":"STEVOR","score":1.0},{"id":"https://openalex.org/keywords/variant-surface-antigens","display_name":"variant surface antigens","score":0.968999981880188},{"id":"https://openalex.org/keywords/stride","display_name":"STRIDE","score":0.7749999761581421},{"id":"https://openalex.org/keywords/hidden-markov-models","display_name":"hidden Markov models","score":0.722000002861023},{"id":"https://openalex.org/keywords/gene-classification","display_name":"gene classification","score":0.5989999771118164},{"id":"https://openalex.org/keywords/plasmodb","display_name":"PlasmoDB","score":0.8339999914169312},{"id":"https://openalex.org/keywords/de-novo-assembly","display_name":"de novo assembly","score":0.8199999928474426},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.5630000233650208}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7912786602973938},{"id":"https://openalex.org/C18007350","wikidata":"https://www.wikidata.org/wiki/Q7394815","display_name":"STRIDE","level":2,"score":0.5766940116882324},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.5315318703651428},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47503307461738586},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.47384554147720337},{"id":"https://openalex.org/C2778371730","wikidata":"https://www.wikidata.org/wiki/Q311383","display_name":"Plasmodium falciparum","level":3,"score":0.44428080320358276},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.42674732208251953},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4099710285663605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3440658450126648},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30285340547561646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1887826919555664},{"id":"https://openalex.org/C2778048844","wikidata":"https://www.wikidata.org/wiki/Q12156","display_name":"Malaria","level":2,"score":0.16178447008132935},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.10663977265357971},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.10444095730781555}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/17981933","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_3_of_STRIDE_a_command-line_HMM-based_identifier_and_sub-classifier_of_Plasmodium_falciparum_RIFIN_and_STEVOR_variant_surface_antigen_families/17981933","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.17981933","doi":"https://doi.org/10.6084/m9.figshare.17981933","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.17981933","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.17981933.v1","doi":"https://doi.org/10.6084/m9.figshare.17981933.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.17981933.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/17981933","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_3_of_STRIDE_a_command-line_HMM-based_identifier_and_sub-classifier_of_Plasmodium_falciparum_RIFIN_and_STEVOR_variant_surface_antigen_families/17981933","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394155251","https://openalex.org/W6901965601","https://openalex.org/W4205797579","https://openalex.org/W2158206091","https://openalex.org/W4407164721","https://openalex.org/W7097609967","https://openalex.org/W6958455454","https://openalex.org/W2068404794","https://openalex.org/W7100472897","https://openalex.org/W2589292775"],"abstract_inverted_index":{"Additional":[0],"file":[1],"3":[2],"List":[3],"of":[4,20,41],"reclassified":[5],"PlasmoDB":[6,21],"sequences":[7],"and":[8,28,43],"annotated":[9],"de":[10,47],"novo":[11,48],"assemblies":[12,49],"using":[13],"STRIDE.":[14],"Excel":[15],"document":[16],"containing":[17],"a":[18],"list":[19],"gene":[22],"IDs":[23],"with":[24,50],"their":[25,51],"original":[26],"annotations":[27],"the":[29,38],"suggested":[30],"classifications":[31],"based":[32],"on":[33],"STRIDE,":[34],"in":[35],"addition":[36],"to":[37],"predicted":[39],"number":[40],"RIFINs":[42],"STEVORs":[44],"from":[45],"15":[46],"respective":[52],"accession":[53],"numbers.":[54]},"counts_by_year":[],"updated_date":"2026-10-09T09:14:12.587421","created_date":"2024-04-08T00:00:00"}
