{"id":"https://openalex.org/W4394088299","doi":"https://doi.org/10.6084/m9.figshare.10049009","title":"MOESM3 of The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples","display_name":"MOESM3 of The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W4394088299","doi":"https://doi.org/10.6084/m9.figshare.10049009"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/10049009","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/MOESM3_of_The_impact_of_sequencing_depth_on_the_inferred_taxonomic_composition_and_AMR_gene_content_of_metagenomic_samples/10049009","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/MOESM3_of_The_impact_of_sequencing_depth_on_the_inferred_taxonomic_composition_and_AMR_gene_content_of_metagenomic_samples/10049009","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009431634","display_name":"Hyun S. Gweon","orcid":"https://orcid.org/0000-0002-6218-6301","observed_orcids":["https://orcid.org/0000-0002-6218-6301"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Gweon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055049959","display_name":"Liam P. Shaw","orcid":"https://orcid.org/0000-0001-7332-0820","observed_orcids":["https://orcid.org/0000-0001-7332-0820"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shaw, Liam","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064078365","display_name":"Jeremy Swann","orcid":"https://orcid.org/0000-0002-1475-8248","observed_orcids":["https://orcid.org/0000-0002-1475-8248"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Swann, Jeremy","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Maio, Nicola","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Maio, Nicola","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021655313","display_name":"Manal AbuOun","orcid":"https://orcid.org/0000-0003-4190-1473","observed_orcids":["https://orcid.org/0000-0003-4190-1473"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"AbuOun, Manal","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019907250","display_name":"Ren\u00e9 Niehus","orcid":"https://orcid.org/0000-0002-6751-4124","observed_orcids":["https://orcid.org/0000-0002-6751-4124"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Niehus, Rene","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075639856","display_name":"Alasdair T. M. Hubbard","orcid":"https://orcid.org/0000-0001-6668-9179","observed_orcids":["https://orcid.org/0000-0001-6668-9179"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hubbard, Alasdair","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Bowes, Mike","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bowes, Mike","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012062286","display_name":"Mark Bailey","orcid":"https://orcid.org/0000-0003-3874-5334","observed_orcids":["https://orcid.org/0000-0003-3874-5334"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bailey, Mark","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026480684","display_name":"Tim Peto","orcid":"https://orcid.org/0000-0003-3477-8307","observed_orcids":["https://orcid.org/0000-0003-3477-8307"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peto, Tim","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041276359","display_name":"Sarah Hoosdally","orcid":"https://orcid.org/0000-0001-7375-6907","observed_orcids":["https://orcid.org/0000-0001-7375-6907"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hoosdally, Sarah","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001331694","display_name":"Ann Sarah Walker","orcid":"https://orcid.org/0000-0002-0412-8509","observed_orcids":["https://orcid.org/0000-0002-0412-8509","https://orcid.org/0000-0003-0421-9264","https://orcid.org/0000-0002-5840-3414","https://orcid.org/0000-0001-6378-4867"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Walker","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076788078","display_name":"Robert Sebra","orcid":"https://orcid.org/0000-0001-9267-2426","observed_orcids":["https://orcid.org/0000-0001-9267-2426"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sebra, Robert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089282433","display_name":"Derrick W. Crook","orcid":"https://orcid.org/0000-0002-0590-2850","observed_orcids":["https://orcid.org/0000-0002-0590-2850"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Crook, Derrick","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030395937","display_name":"Muna F. Anjum","orcid":"https://orcid.org/0000-0001-5278-7587","observed_orcids":["https://orcid.org/0000-0001-5278-7587"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anjum, Muna","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011141863","display_name":"Daniel S. Read","orcid":"https://orcid.org/0000-0001-8546-5154","observed_orcids":["https://orcid.org/0000-0001-8546-5154"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Read, Daniel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5028335853","display_name":"Nicole E Stoesser","orcid":"https://orcid.org/0000-0002-4508-7969","observed_orcids":["https://orcid.org/0000-0002-4508-7969","https://orcid.org/0000-0002-2887-2068"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stoesser, Nicole","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9682999849319458,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.01140000019222498,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.00419999985024333,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequencing-depth","display_name":"sequencing depth","score":0.9919999837875366},{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.8759999871253967},{"id":"https://openalex.org/keywords/taxonomic-composition","display_name":"taxonomic composition","score":0.8830000162124634},{"id":"https://openalex.org/keywords/antimicrobial-resistance-genes","display_name":"antimicrobial resistance genes","score":0.9860000014305115},{"id":"https://openalex.org/keywords/read-mapping","display_name":"read mapping","score":0.36000001430511475}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.950603723526001},{"id":"https://openalex.org/C40231798","wikidata":"https://www.wikidata.org/wiki/Q1333743","display_name":"Composition (language)","level":2,"score":0.5173927545547485},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.41206106543540955},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.40576326847076416},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4042244553565979},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29542046785354614},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18484434485435486},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:figshare.com:article/10049009","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/MOESM3_of_The_impact_of_sequencing_depth_on_the_inferred_taxonomic_composition_and_AMR_gene_content_of_metagenomic_samples/10049009","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.10049009","doi":"https://doi.org/10.6084/m9.figshare.10049009","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.10049009","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.10049009.v1","doi":"https://doi.org/10.6084/m9.figshare.10049009.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.10049009.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/10049009","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/MOESM3_of_The_impact_of_sequencing_depth_on_the_inferred_taxonomic_composition_and_AMR_gene_content_of_metagenomic_samples/10049009","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394519213","https://openalex.org/W4394471014","https://openalex.org/W6939206471","https://openalex.org/W2977723904","https://openalex.org/W4416506807","https://openalex.org/W3014442747","https://openalex.org/W7100953602","https://openalex.org/W7104008436","https://openalex.org/W3028587149","https://openalex.org/W4396660241"],"abstract_inverted_index":{"Additional":[0],"file":[1],"3:":[2],"Table":[3],"S1.":[4],"Metagenomic":[5],"data.":[6],"Each":[7],"sample":[8,33,48],"was":[9],"sequenced":[10],"in":[11,35],"replicate":[12],"across":[13],"four":[14],"lanes":[15],"(2":[16],"\u00d7":[17],"4":[18],"=":[19],"8":[20],"files":[21],"per":[22,32],"sample),":[23],"combining":[24],"to":[25,43],"give":[26],"the":[27,36],"~":[28],"200":[29],"million":[30],"reads":[31,41],"used":[34],"study.":[37],"The":[38],"number":[39],"of":[40],"mapping":[42],"T.":[44],"thermophilus":[45],"from":[46],"each":[47],"is":[49],"also":[50],"given.":[51],"Provided":[52],"as":[53],"Excel":[54],"spreadsheet.":[55]},"counts_by_year":[],"updated_date":"2026-11-06T12:05:46.655746","created_date":"2024-04-08T00:00:00"}