{"id":"https://openalex.org/W4394079743","doi":"https://doi.org/10.6084/m9.figshare.c.3833383_d3","title":"Additional file 3: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize","display_name":"Additional file 3: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W4394079743","doi":"https://doi.org/10.6084/m9.figshare.c.3833383_d3"},"language":"en","primary_location":{"id":"pmh:oai:dare.uva.nl:datasets/525059ad-dde5-43a7-a8a8-e305a48e1baf","doi":null,"is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.3833383_d3.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.6084/m9.figshare.c.3833383_d3.v1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004454425","display_name":"Rurika Oka","orcid":"https://orcid.org/0000-0003-4107-7250","observed_orcids":["https://orcid.org/0000-0003-4107-7250"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rurika Oka","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031390830","display_name":"Johan Zicola","orcid":"https://orcid.org/0000-0002-7201-8221","observed_orcids":["https://orcid.org/0000-0002-7201-8221"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zicola, Johan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028082387","display_name":"Blaise Weber","orcid":"https://orcid.org/0000-0001-7244-9198","observed_orcids":["https://orcid.org/0000-0001-7244-9198","https://orcid.org/0000-0003-4012-4430"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weber, Blaise","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007186211","display_name":"Sarah N. Anderson","orcid":"https://orcid.org/0000-0002-1671-2286","observed_orcids":["https://orcid.org/0000-0002-1671-2286"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Anderson, Sarah","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051248114","display_name":"Charlie T. Hodgman","orcid":"https://orcid.org/0000-0001-5862-8296","observed_orcids":["https://orcid.org/0000-0001-5862-8296"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hodgman, Charlie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032237809","display_name":"Jonathan Isaiah Gent","orcid":"https://orcid.org/0000-0002-3584-7717","observed_orcids":["https://orcid.org/0000-0002-3584-7717"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gent, Jonathan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015243475","display_name":"Jan\u2010Jaap Wesselink","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jan-Jaap Wesselink","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023378154","display_name":"Nathan M. Springer","orcid":"https://orcid.org/0000-0002-7301-4759","observed_orcids":["https://orcid.org/0000-0002-7301-4759"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Springer, Nathan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055133594","display_name":"Huub C. J. Hoefsloot","orcid":"https://orcid.org/0000-0001-9963-0413","observed_orcids":["https://orcid.org/0000-0001-9963-0413"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hoefsloot, Huub","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052390952","display_name":"Franziska Turck","orcid":"https://orcid.org/0000-0002-4982-5949","observed_orcids":["https://orcid.org/0000-0002-4982-5949"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Turck, Franziska","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5042032739","display_name":"Maike E. Stam","orcid":"https://orcid.org/0000-0003-0363-4677","observed_orcids":["https://orcid.org/0000-0003-0363-4677"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stam, Maike","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.951200008392334,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.951200008392334,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.01899999938905239,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.015200000256299973,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/enhancers","display_name":"enhancers","score":0.9599999785423279},{"id":"https://openalex.org/keywords/maize","display_name":"maize","score":0.8690000176429749},{"id":"https://openalex.org/keywords/husk","display_name":"husk","score":0.777999997138977},{"id":"https://openalex.org/keywords/dnase-i-hypersensitivity","display_name":"DNase I hypersensitivity","score":0.7630000114440918},{"id":"https://openalex.org/keywords/h3k9ac","display_name":"H3K9ac","score":0.9570000171661377},{"id":"https://openalex.org/keywords/chromatin-features","display_name":"chromatin features","score":0.781000018119812},{"id":"https://openalex.org/keywords/chromosome-number","display_name":"chromosome number","score":0.4490000009536743}],"concepts":[{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.7594744563102722},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.7458594441413879},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5796895027160645},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.575620174407959},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5604410767555237},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.538108229637146},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49780774116516113},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2685551643371582},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.14778146147727966}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:dare.uva.nl:datasets/525059ad-dde5-43a7-a8a8-e305a48e1baf","doi":null,"is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.3833383_d3.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"pmh:oai:figshare.com:article/5234296","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Additional_file_3_of_Genome-wide_mapping_of_transcriptional_enhancer_candidates_using_DNA_and_chromatin_features_in_maize/5234296","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.c.3833383_d3","doi":"https://doi.org/10.6084/m9.figshare.c.3833383_d3","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.3833383_d3","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.6084/m9.figshare.c.3833383_d3.v1","doi":"https://doi.org/10.6084/m9.figshare.c.3833383_d3.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.3833383_d3.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:dare.uva.nl:datasets/525059ad-dde5-43a7-a8a8-e305a48e1baf","doi":null,"is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.3833383_d3.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394209176","https://openalex.org/W4394077192","https://openalex.org/W7136061680","https://openalex.org/W2737056215","https://openalex.org/W4394244222","https://openalex.org/W2903227248","https://openalex.org/W4394495257","https://openalex.org/W4392077364","https://openalex.org/W6958811097","https://openalex.org/W3118250407"],"abstract_inverted_index":{"List":[0],"of":[1,39],"enhancer":[2],"candidates":[3],"in":[4],"husk.":[5],"The":[6],"columns":[7],"indicate":[8],"from":[9],"left":[10],"to":[11],"right:":[12],"chromosome":[13],"number,":[14],"start":[15],"coordinate,":[16,18],"end":[17],"candidate":[19],"ID,":[20],"DNase":[21,24],"intensity":[22,29],"ranking,":[23],"ranking":[25,30,33],"p":[26,34],"value,":[27,35],"H3K9ac":[28,32],"and":[31],"absence":[36],"or":[37],"presence":[38],"CNSs.":[40],"(XLSX":[41],"86":[42],"kb)":[43]},"counts_by_year":[],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2024-04-08T00:00:00"}
