{"id":"https://openalex.org/W4394043513","doi":"https://doi.org/10.5281/zenodo.3066261","title":"Supplementary data for: Detection of expressed mutations in acute myeloid leukemia cells using single cell RNA-sequencing","display_name":"Supplementary data for: Detection of expressed mutations in acute myeloid leukemia cells using single cell RNA-sequencing","publication_year":2019,"publication_date":"2019-05-20","ids":{"openalex":"https://openalex.org/W4394043513","doi":"https://doi.org/10.5281/zenodo.3066261"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/8186771","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Supplementary_data_for_Detection_of_expressed_mutations_in_acute_myeloid_leukemia_cells_using_single_cell_RNA-sequencing/8186771","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"supplementary-materials","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/Supplementary_data_for_Detection_of_expressed_mutations_in_acute_myeloid_leukemia_cells_using_single_cell_RNA-sequencing/8186771","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013666106","display_name":"Allegra A. Petti","orcid":"https://orcid.org/0000-0001-6884-6107","observed_orcids":["https://orcid.org/0000-0001-6884-6107"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Petti, Allegra A","raw_affiliation_strings":["Washington University in St Louis"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in St Louis","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034310814","display_name":"Stephen R. Williams","orcid":"https://orcid.org/0000-0003-2108-2757","observed_orcids":["https://orcid.org/0000-0003-2108-2757"]},"institutions":[{"id":"https://openalex.org/I4210117513","display_name":"10X Genomics (United States)","ror":"https://ror.org/01sxvbm95","country_code":"US","type":"company","lineage":["https://openalex.org/I4210117513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Williams, Stephen R","raw_affiliation_strings":["10x Genomics, Inc., Pleasanton, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"10x Genomics, Inc., Pleasanton, CA","institution_ids":["https://openalex.org/I4210117513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101442425","display_name":"Christopher A. Miller","orcid":"https://orcid.org/0000-0003-4266-6700","observed_orcids":["https://orcid.org/0000-0003-4266-6700"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miller, Christopher A","raw_affiliation_strings":["Washington University in St Louis"],"raw_orcid":"https://orcid.org/0000-0003-4266-6700","affiliations":[{"raw_affiliation_string":"Washington University in St Louis","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083807320","display_name":"Ian T. Fiddes","orcid":"https://orcid.org/0000-0002-1580-7443","observed_orcids":["https://orcid.org/0000-0002-1580-7443"]},"institutions":[{"id":"https://openalex.org/I4210117513","display_name":"10X Genomics (United States)","ror":"https://ror.org/01sxvbm95","country_code":"US","type":"company","lineage":["https://openalex.org/I4210117513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fiddes, Ian T","raw_affiliation_strings":["10x Genomics, Inc., Pleasanton, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"10x Genomics, Inc., Pleasanton, CA","institution_ids":["https://openalex.org/I4210117513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038311597","display_name":"Sridhar Nonavinkere Srivatsan","orcid":"https://orcid.org/0000-0001-6293-4632","observed_orcids":["https://orcid.org/0000-0001-6293-4632"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srivatsan, Sridhar N","raw_affiliation_strings":["Washington University in St Louis"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in St Louis","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002111756","display_name":"David Y. Chen","orcid":"https://orcid.org/0000-0002-3681-6576","observed_orcids":["https://orcid.org/0000-0002-3681-6576","https://orcid.org/0009-0007-5537-9096"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chen, David Y","raw_affiliation_strings":["Washington University in St Louis"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in St Louis","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051683931","display_name":"Catrina C. Fronick","orcid":"https://orcid.org/0000-0002-2766-9551","observed_orcids":["https://orcid.org/0000-0002-2766-9551"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fronick, Catrina C","raw_affiliation_strings":["Washington University in St Louis"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in St Louis","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061026009","display_name":"Robert S. Fulton","orcid":"https://orcid.org/0009-0006-6820-3404","observed_orcids":["https://orcid.org/0009-0006-6820-3404"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fulton, Robert S","raw_affiliation_strings":["Washington University in St Louis"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in St Louis","institution_ids":["https://openalex.org/I204465549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089568820","display_name":"Deanna M. Church","orcid":"https://orcid.org/0000-0003-4264-1853","observed_orcids":["https://orcid.org/0000-0003-4264-1853"]},"institutions":[{"id":"https://openalex.org/I4210117513","display_name":"10X Genomics (United States)","ror":"https://ror.org/01sxvbm95","country_code":"US","type":"company","lineage":["https://openalex.org/I4210117513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Church, Deanna M","raw_affiliation_strings":["10x Genomics, Inc., Pleasanton, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"10x Genomics, Inc., Pleasanton, CA","institution_ids":["https://openalex.org/I4210117513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076598094","display_name":"Timothy James Ley","orcid":"https://orcid.org/0000-0002-9913-0520","observed_orcids":["https://orcid.org/0000-0002-9913-0520"]},"institutions":[{"id":"https://openalex.org/I204465549","display_name":"Washington University in St. Louis","ror":"https://ror.org/01yc7t268","country_code":"US","type":"education","lineage":["https://openalex.org/I204465549"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ley, Timothy J","raw_affiliation_strings":["Washington University in St Louis"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Washington University in St Louis","institution_ids":["https://openalex.org/I204465549"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10309","display_name":"Acute Myeloid Leukemia Research","score":0.6909000277519226,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10309","display_name":"Acute Myeloid Leukemia Research","score":0.6909000277519226,"subfield":{"id":"https://openalex.org/subfields/2720","display_name":"Hematology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.2939000129699707,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.009700000286102295,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/acute-myeloid-leukemia","display_name":"acute myeloid leukemia","score":0.996999979019165},{"id":"https://openalex.org/keywords/somatic-mutations","display_name":"somatic mutations","score":0.8299999833106995},{"id":"https://openalex.org/keywords/single-cell-rna-sequencing","display_name":"single-cell RNA sequencing","score":0.8339999914169312},{"id":"https://openalex.org/keywords/mutation-detection","display_name":"mutation detection","score":0.49900001287460327},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.5870000123977661}],"concepts":[{"id":"https://openalex.org/C2778729363","wikidata":"https://www.wikidata.org/wiki/Q11688946","display_name":"Myeloid leukemia","level":2,"score":0.7162120342254639},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5189518928527832},{"id":"https://openalex.org/C2779282312","wikidata":"https://www.wikidata.org/wiki/Q1956561","display_name":"Myeloid","level":2,"score":0.49524107575416565},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4496704041957855},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.4247353971004486},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4160388112068176},{"id":"https://openalex.org/C153911025","wikidata":"https://www.wikidata.org/wiki/Q7202","display_name":"Molecular biology","level":1,"score":0.35546809434890747},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3225816488265991},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28753232955932617},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2855651378631592}],"mesh":[],"locations_count":7,"locations":[{"id":"pmh:oai:figshare.com:article/8186771","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Supplementary_data_for_Detection_of_expressed_mutations_in_acute_myeloid_leukemia_cells_using_single_cell_RNA-sequencing/8186771","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:figshare.com:article/8981786","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Supplementary_data_for_Detection_of_expressed_mutations_in_acute_myeloid_leukemia_cells_using_single_cell_RNA-sequencing/8981786","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:zenodo.org:3066262","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/3066262","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"pmh:oai:zenodo.org:3345981","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/3345981","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.3066261","doi":"https://doi.org/10.5281/zenodo.3066261","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3066261","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.3066262","doi":"https://doi.org/10.5281/zenodo.3066262","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3066262","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.3345981","doi":"https://doi.org/10.5281/zenodo.3345981","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3345981","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/8186771","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Supplementary_data_for_Detection_of_expressed_mutations_in_acute_myeloid_leukemia_cells_using_single_cell_RNA-sequencing/8186771","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[{"score":0.8048999905586243,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2896988469","https://openalex.org/W2915399488","https://openalex.org/W2968098426","https://openalex.org/W6913020992","https://openalex.org/W6901881656","https://openalex.org/W4393687801","https://openalex.org/W4405837577","https://openalex.org/W2883695236","https://openalex.org/W4245007478","https://openalex.org/W2026402481"],"abstract_inverted_index":{"Supplemental":[0],"data":[1,38,55],"for":[2,40],"the":[3],"publication:":[4],"Detection":[5],"of":[6,47,63],"expressed":[7],"mutations":[8],"in":[9],"acute":[10],"myeloid":[11],"leukemia":[12],"cells":[13],"using":[14],"single":[15],"cell":[16],"RNA-sequencing":[17],"Contents:":[18],"-":[19,21,28,30,43,45,56],"expression_matrices.tar":[20],"Gene/Barcode":[22],"expression":[23],"matrices":[24],"from":[25],"`cellranger":[26],"count`":[27],"*.seurat.rds":[29],"R":[31],"object":[32],"files":[33],"with":[34],"Seurat":[35],"analyses":[36],"and":[37,54],"structures":[39],"each":[41],"sample":[42],"scrna_mutations.tar.gz":[44],"copy":[46],"a":[48],"git":[49],"repository":[50],"containing":[51],"additional":[52],"scripts":[53],"also":[57],"hosted":[58],"at":[59],"https://github.com/genome/scrna_mutations":[60],"(snapshot":[61],"as":[62],"May":[64],"20,":[65],"2019)":[66]},"counts_by_year":[],"updated_date":"2026-10-09T09:14:12.587421","created_date":"2024-04-07T00:00:00"}
