{"id":"https://openalex.org/W4393834290","doi":"https://doi.org/10.5281/zenodo.3464541","title":"Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics","display_name":"Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning-enabled molecular diagnostics","publication_year":2019,"publication_date":"2019-09-29","ids":{"openalex":"https://openalex.org/W4393834290","doi":"https://doi.org/10.5281/zenodo.3464541"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/11448888","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Predicting_antimicrobial_resistance_in_Pseudomonas_aeruginosa_with_machine_learning-enabled_molecular_diagnostics/11448888","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/Predicting_antimicrobial_resistance_in_Pseudomonas_aeruginosa_with_machine_learning-enabled_molecular_diagnostics/11448888","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112483612","display_name":"Ariane Khaledi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210151865","display_name":"Center for Experimental and Clinical Infection Research","ror":"https://ror.org/04bya8j72","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I34809795","https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Khaledi\u00a7, Ariane","raw_affiliation_strings":["Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany"],"raw_orcid":"https://orcid.org/0000-0002-6518-7238","affiliations":[{"raw_affiliation_string":"Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany","institution_ids":["https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108913720","display_name":"Aaron Weinmann\u00a7","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210151865","display_name":"Center for Experimental and Clinical Infection Research","ror":"https://ror.org/04bya8j72","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I34809795","https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Weinmann\u00a7, Aaron","raw_affiliation_strings":["Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany AND German Center for Infection Research (DZIF), Braunschweig, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4597-2471","affiliations":[{"raw_affiliation_string":"Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany AND German Center for Infection Research (DZIF), Braunschweig, Germany","institution_ids":["https://openalex.org/I4210115305","https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037370878","display_name":"Monika Schniederjans","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210151865","display_name":"Center for Experimental and Clinical Infection Research","ror":"https://ror.org/04bya8j72","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I34809795","https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Schniederjans*, Monika","raw_affiliation_strings":["Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany"],"raw_orcid":"https://orcid.org/0000-0002-6518-7238","affiliations":[{"raw_affiliation_string":"Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany","institution_ids":["https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014316659","display_name":"Ehsaneddin Asgari","orcid":"https://orcid.org/0000-0002-6518-7238","observed_orcids":["https://orcid.org/0000-0002-6518-7238"]},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["DE","US"],"is_corresponding":false,"raw_author_name":"Asgari*, Ehsaneddin","raw_affiliation_strings":["Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, USA"],"raw_orcid":"https://orcid.org/0000-0002-6518-7238","affiliations":[{"raw_affiliation_string":"Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, USA","institution_ids":["https://openalex.org/I4210124929","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056742161","display_name":"Tzu\u2010Hao Kuo","orcid":"https://orcid.org/0000-0001-9530-1970","observed_orcids":["https://orcid.org/0000-0001-9530-1970"]},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tzu-Hao Kuo","raw_affiliation_strings":["Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany","institution_ids":["https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101326742","display_name":"Antonioa Oliver","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210126021","display_name":"Health Research Institute of the Balearic Islands","ror":"https://ror.org/037xbgq12","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210126021"]},{"id":"https://openalex.org/I4210152826","display_name":"Hospital Universitario Son Espases","ror":"https://ror.org/05jmd4043","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210152826"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Antonioa Oliver","raw_affiliation_strings":["Servicio de Microbiolog\u00eda and Unidad de Investigaci\u00f3n Hospital Universitario Son Espases, Instituto de Investigaci\u00f3n Sanitaria Illes Balears (IdISPa), Palma de Mallorca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Servicio de Microbiolog\u00eda and Unidad de Investigaci\u00f3n Hospital Universitario Son Espases, Instituto de Investigaci\u00f3n Sanitaria Illes Balears (IdISPa), Palma de Mallorca, Spain","institution_ids":["https://openalex.org/I4210126021","https://openalex.org/I4210152826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054331971","display_name":"Gabriel Cabot","orcid":"https://orcid.org/0000-0002-6452-9945","observed_orcids":["https://orcid.org/0000-0002-6452-9945"]},"institutions":[{"id":"https://openalex.org/I4210126021","display_name":"Health Research Institute of the Balearic Islands","ror":"https://ror.org/037xbgq12","country_code":"ES","type":"facility","lineage":["https://openalex.org/I4210126021"]},{"id":"https://openalex.org/I4210152826","display_name":"Hospital Universitario Son Espases","ror":"https://ror.org/05jmd4043","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210152826"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Cabot, Gabriel","raw_affiliation_strings":["Servicio de Microbiolog\u00eda and Unidad de Investigaci\u00f3n Hospital Universitario Son Espases, Instituto de Investigaci\u00f3n Sanitaria Illes Balears (IdISPa), Palma de Mallorca, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Servicio de Microbiolog\u00eda and Unidad de Investigaci\u00f3n Hospital Universitario Son Espases, Instituto de Investigaci\u00f3n Sanitaria Illes Balears (IdISPa), Palma de Mallorca, Spain","institution_ids":["https://openalex.org/I4210126021","https://openalex.org/I4210152826"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084188031","display_name":"Axel Kola","orcid":"https://orcid.org/0000-0003-4333-5663","observed_orcids":["https://orcid.org/0000-0003-4333-5663"]},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kola, Axel","raw_affiliation_strings":["Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute of Hygiene and Environmental Medicine, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute of Hygiene and Environmental Medicine, Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003538704","display_name":"Petra Gastmeier","orcid":"https://orcid.org/0000-0001-5520-4287","observed_orcids":["https://orcid.org/0000-0001-5520-4287"]},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 \u2013 Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gastmeier, Petra","raw_affiliation_strings":["Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute of Hygiene and Environmental Medicine, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute of Hygiene and Environmental Medicine, Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056491400","display_name":"Michael Hogardt","orcid":"https://orcid.org/0000-0002-0742-950X","observed_orcids":["https://orcid.org/0000-0002-0742-950X"]},"institutions":[{"id":"https://openalex.org/I4210132578","display_name":"University Hospital Frankfurt","ror":"https://ror.org/03f6n9m15","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210132578"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hogardt, Michael","raw_affiliation_strings":["Institute of Medical Microbiology and Infection Control, University Hospital Frankfurt, Frankfurt/Main, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Medical Microbiology and Infection Control, University Hospital Frankfurt, Frankfurt/Main, Germany","institution_ids":["https://openalex.org/I4210132578"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Jonas, Daniel","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas, Daniel","raw_affiliation_strings":["Institute for Infection Prevention and Hospital Epidemiology, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Infection Prevention and Hospital Epidemiology, Faculty of Medicine, Medical Center - University of Freiburg, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081","https://openalex.org/I2801240073"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062246663","display_name":"Mohammad R. K. Mofrad","orcid":"https://orcid.org/0000-0001-7004-4859","observed_orcids":["https://orcid.org/0000-0001-7004-4859"]},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mofrad, Mohammad R.K.","raw_affiliation_strings":["Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Lab, Berkeley, USA AND Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Biophysics and Integrated Bioimaging, Lawrence Berkeley National Lab, Berkeley, USA AND Molecular Cell Biomechanics Laboratory, Departments of Bioengineering and Mechanical Engineering, University of California, Berkeley, USA","institution_ids":["https://openalex.org/I148283060","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020102831","display_name":"Andreas Bremges","orcid":"https://orcid.org/0000-0001-6739-7899","observed_orcids":["https://orcid.org/0000-0001-6739-7899"]},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bremges, Andreas","raw_affiliation_strings":["Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND German Center for Infection Research (DZIF), Braunschweig, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6739-7899","affiliations":[{"raw_affiliation_string":"Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND German Center for Infection Research (DZIF), Braunschweig, Germany","institution_ids":["https://openalex.org/I4210115305","https://openalex.org/I4210124929"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081103408","display_name":"Alice Carolyn McHardy","orcid":"https://orcid.org/0000-0003-2370-3430","observed_orcids":["https://orcid.org/0000-0003-2370-3430"]},"institutions":[{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]},{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"McHardy, Alice C.","raw_affiliation_strings":["Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND German Center for Infection Research (DZIF), Braunschweig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Braunschweig, Germany AND German Center for Infection Research (DZIF), Braunschweig, Germany","institution_ids":["https://openalex.org/I4210115305","https://openalex.org/I4210124929"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026897650","display_name":"Susanne H\u00e4u\u00dfler","orcid":"https://orcid.org/0000-0001-6141-9102","observed_orcids":["https://orcid.org/0000-0001-6141-9102"]},"institutions":[{"id":"https://openalex.org/I4210124929","display_name":"Helmholtz Centre for Infection Research","ror":"https://ror.org/03d0p2685","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I4210124929"]},{"id":"https://openalex.org/I4210151865","display_name":"Center for Experimental and Clinical Infection Research","ror":"https://ror.org/04bya8j72","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I34809795","https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Haeussler, Susanne","raw_affiliation_strings":["Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular Bacteriology, Helmholtz Centre for Infection Research, Braunschweig, Germany AND Molecular Bacteriology, TWINCORE, Centre for Experimental and Clinical Infection Research, Hannover, Germany","institution_ids":["https://openalex.org/I4210124929","https://openalex.org/I4210151865"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12167","display_name":"Bacterial Identification and Susceptibility Testing","score":0.04910000041127205,"subfield":{"id":"https://openalex.org/subfields/1308","display_name":"Clinical Biochemistry"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.00800000037997961,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.9800000190734863},{"id":"https://openalex.org/keywords/antimicrobial-resistance","display_name":"antimicrobial resistance","score":0.9070000052452087},{"id":"https://openalex.org/keywords/machine-learning","display_name":"machine learning","score":0.6299999952316284},{"id":"https://openalex.org/keywords/molecular-diagnosis","display_name":"molecular diagnosis","score":0.906000018119812},{"id":"https://openalex.org/keywords/gene-presence-absence","display_name":"gene presence/absence","score":0.7789999842643738},{"id":"https://openalex.org/keywords/single-nucleotide-polymorphisms","display_name":"single nucleotide polymorphisms","score":0.8989999890327454},{"id":"https://openalex.org/keywords/gene-expression","display_name":"gene expression","score":0.9629999995231628},{"id":"https://openalex.org/keywords/bacterial-isolates","display_name":"bacterial isolates","score":0.4410000145435333},{"id":"https://openalex.org/keywords/clsi-guidelines","display_name":"CLSI guidelines","score":0.5019999742507935}],"concepts":[{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.866762638092041},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.6429044008255005},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.5477222800254822},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.5135203003883362},{"id":"https://openalex.org/C179786068","wikidata":"https://www.wikidata.org/wiki/Q16257937","display_name":"Molecular diagnostics","level":2,"score":0.4266563355922699},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40387657284736633},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3805871605873108},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32494962215423584},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.31432223320007324},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.16101747751235962},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.1397520899772644},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.13426706194877625},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10659027099609375}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:figshare.com:article/11448888","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Predicting_antimicrobial_resistance_in_Pseudomonas_aeruginosa_with_machine_learning-enabled_molecular_diagnostics/11448888","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:zenodo.org:3591847","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/3591847","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.3464541","doi":"https://doi.org/10.5281/zenodo.3464541","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3464541","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.3591847","doi":"https://doi.org/10.5281/zenodo.3591847","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.3591847","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/11448888","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/Predicting_antimicrobial_resistance_in_Pseudomonas_aeruginosa_with_machine_learning-enabled_molecular_diagnostics/11448888","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.8371999859809875,"id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4394128831","https://openalex.org/W4414748422","https://openalex.org/W7223427154","https://openalex.org/W7117540427","https://openalex.org/W4413419093","https://openalex.org/W7132580683","https://openalex.org/W7160438949","https://openalex.org/W7171453585","https://openalex.org/W4399523922","https://openalex.org/W2981811600"],"abstract_inverted_index":{"Datasets":[0],"for":[1],"manuscript":[2],"\"Predicting":[3],"antimicrobial":[4],"resistance":[5,20],"in":[6,68,91,120,148],"Pseudomonas":[7],"aeruginosa":[8],"with":[9],"machine":[10],"learning-enabled":[11],"molecular":[12,52],"diagnostics\"":[13],"Metadata.zip":[14],"phenotypes.txt:":[15],"tabular":[16],"file":[17],"containing":[18],"binary":[19],"phenotypes":[21],"based":[22],"on":[23],"CLSI":[24],"guidelines,":[25],"where":[26],"the":[27,30,33,50,62,92,99,107,121,128,136,149,156,164],"rows":[28,105,134,162],"are":[29,79],"isolates":[31],"and":[32,75],"columns":[34,97,126,154],"correspond":[35],"to":[36,66],"different":[37],"drugs.":[38],"Resistance":[39],":":[40],"1,":[41],"susceptibility:":[42],"0,":[43],"missing:":[44],"intermediate":[45],"resistant":[46],"Features_gpa_exp_snps.zip":[47],"We":[48],"provide":[49],"processed":[51],"data":[53],"as":[54],"Numpy":[55,63],"compressed":[56],"files":[57],"(npz.).":[58],"You":[59],"can":[60],"use":[61],"load":[64],"method":[65],"read":[67],"these":[69],"tables":[70],"https://docs.scipy.org/doc/numpy/reference/generated/numpy.load.htm.":[71],"The":[72,88,96,104,117,125,133,145,153,161],"row":[73],"(strains_list)":[74],"column":[76],"labels":[77],"(feature_lists)":[78],"stored":[80],"separately.":[81],"genexp:":[82],"gene":[83,112],"expression":[84],"table":[85,114,142],"directory":[86,115,143],"genexp_feature_vect.npz:":[87],"feature":[89,100,108,118,129,137,146,157,165],"matrix":[90,101,109,119,130,138,147,158,166],"numpy":[93,122,150],"format":[94,123,151],"genexp_feature_list.txt:":[95],"of":[98,106,127,135,155,163],"(features)":[102,131,159],"genexp_strains_list.txt:":[103],"(isolates)":[110,139,167],"gpa:":[111],"presence/absence":[113],"gpa_feature_vect.npz:":[116],"gpa_feature_list.txt:":[124],"gpa_strains_list.txt:":[132],"snps:":[140],"SNPs":[141],"snps_feature_vect.npz:":[144],"snps_feature_list.txt:":[152],"snps_strains_list.txt:":[160]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1}],"updated_date":"2026-10-22T18:32:59.640997","created_date":"2024-04-03T00:00:00"}