{"id":"https://openalex.org/W4393821792","doi":"https://doi.org/10.5281/zenodo.7149204","title":"Evolutionary Landscapes of Human cis-regulatory Elements and Transcription Factor Binding Sites in the Mammalian Lineage","display_name":"Evolutionary Landscapes of Human cis-regulatory Elements and Transcription Factor Binding Sites in the Mammalian Lineage","publication_year":2022,"publication_date":"2022-10-05","ids":{"openalex":"https://openalex.org/W4393821792","doi":"https://doi.org/10.5281/zenodo.7149204"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7149205","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7149205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7149205","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045367601","display_name":"Gregory Andrews","orcid":"https://orcid.org/0000-0002-9880-3965","observed_orcids":["https://orcid.org/0000-0002-9880-3965"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrews, Gregory R","raw_affiliation_strings":["UMass Chan Medical School"],"raw_orcid":"https://orcid.org/0000-0002-9880-3965","affiliations":[{"raw_affiliation_string":"UMass Chan Medical School","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040973022","display_name":"Kaili Fan","orcid":"https://orcid.org/0000-0002-8723-7902","observed_orcids":["https://orcid.org/0000-0002-8723-7902"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fan, Kaili","raw_affiliation_strings":["UMass Chan Medical School"],"raw_orcid":"https://orcid.org/0000-0002-8723-7902","affiliations":[{"raw_affiliation_string":"UMass Chan Medical School","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037976483","display_name":"Henry Pratt","orcid":"https://orcid.org/0000-0001-9413-834X","observed_orcids":["https://orcid.org/0000-0001-9413-834X"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pratt, Henry","raw_affiliation_strings":["UMass Chan Medical School"],"raw_orcid":"https://orcid.org/0000-0001-9413-834X","affiliations":[{"raw_affiliation_string":"UMass Chan Medical School","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062121389","display_name":"Nishigandha N. Phalke","orcid":"https://orcid.org/0000-0003-3980-6450","observed_orcids":["https://orcid.org/0000-0003-3980-6450"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Phalke, Nishigandha","raw_affiliation_strings":["UMass Chan Medical School"],"raw_orcid":"https://orcid.org/0000-0003-3980-6450","affiliations":[{"raw_affiliation_string":"UMass Chan Medical School","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056439450","display_name":"Elinor K. Karlsson","orcid":"https://orcid.org/0000-0002-4343-3776","observed_orcids":["https://orcid.org/0000-0002-4343-3776"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Karlsson, Elinor","raw_affiliation_strings":["Broad Institute"],"raw_orcid":"https://orcid.org/0000-0002-4343-3776","affiliations":[{"raw_affiliation_string":"Broad Institute","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007985109","display_name":"Kerstin Lindblad\u2010Toh","orcid":"https://orcid.org/0000-0001-8338-0253","observed_orcids":["https://orcid.org/0000-0001-8338-0253"]},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lindblad-Toh, Kerstin","raw_affiliation_strings":["Broad Institute"],"raw_orcid":"https://orcid.org/0000-0001-8338-0253","affiliations":[{"raw_affiliation_string":"Broad Institute","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042815092","display_name":"Steven Gazal","orcid":"https://orcid.org/0000-0003-4510-5730","observed_orcids":["https://orcid.org/0000-0003-4510-5730","https://orcid.org/0000-0001-5714-7597"]},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gazal, Steven","raw_affiliation_strings":["Keck School of Medicine, University of Southern California"],"raw_orcid":"https://orcid.org/0000-0003-4510-5730","affiliations":[{"raw_affiliation_string":"Keck School of Medicine, University of Southern California","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079819085","display_name":"Jill E. Moore","orcid":"https://orcid.org/0000-0002-3023-0806","observed_orcids":["https://orcid.org/0000-0002-3023-0806"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Moore, Jill","raw_affiliation_strings":["UMass Chan Medical School"],"raw_orcid":"https://orcid.org/0000-0002-3023-0806","affiliations":[{"raw_affiliation_string":"UMass Chan Medical School","institution_ids":["https://openalex.org/I166722992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084369008","display_name":"Zhiping Weng","orcid":"https://orcid.org/0000-0002-3032-7966","observed_orcids":["https://orcid.org/0000-0002-3032-7966"]},"institutions":[{"id":"https://openalex.org/I166722992","display_name":"University of Massachusetts Chan Medical School","ror":"https://ror.org/0464eyp60","country_code":"US","type":"education","lineage":["https://openalex.org/I166722992"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weng, Zhiping","raw_affiliation_strings":["UMass Chan Medical School"],"raw_orcid":"https://orcid.org/0000-0002-3032-7966","affiliations":[{"raw_affiliation_string":"UMass Chan Medical School","institution_ids":["https://openalex.org/I166722992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9369999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9369999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.02979999966919422,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.006399999838322401,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cis-regulatory-elements","display_name":"cis-regulatory elements","score":0.9850000143051147},{"id":"https://openalex.org/keywords/transcription-factor-binding-sites","display_name":"transcription factor binding sites","score":1.0},{"id":"https://openalex.org/keywords/mammalian-evolution","display_name":"mammalian evolution","score":0.9739999771118164},{"id":"https://openalex.org/keywords/human-genome","display_name":"human genome","score":0.5139999985694885},{"id":"https://openalex.org/keywords/regulatory-evolution","display_name":"regulatory evolution","score":0.47699999809265137},{"id":"https://openalex.org/keywords/enhancers","display_name":"enhancers","score":0.5130000114440918}],"concepts":[{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.726901650428772},{"id":"https://openalex.org/C2781039887","wikidata":"https://www.wikidata.org/wiki/Q1391724","display_name":"Factor (programming language)","level":2,"score":0.509067952632904},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.48663219809532166},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4411023259162903},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4191424250602722},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.411590039730072},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3941822946071625},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.23085084557533264},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.21629363298416138},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.18466797471046448},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.12403956055641174},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"pmh:oai:zenodo.org:7149205","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7149205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"pmh:oai:zenodo.org:7447627","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7447627","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.7149204","doi":"https://doi.org/10.5281/zenodo.7149204","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7149204","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.7149205","doi":"https://doi.org/10.5281/zenodo.7149205","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7149205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.7447627","doi":"https://doi.org/10.5281/zenodo.7447627","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7447627","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7149205","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7149205","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7211885740","https://openalex.org/W2060652253","https://openalex.org/W1987320425","https://openalex.org/W2095595375","https://openalex.org/W7095865022","https://openalex.org/W1803747163","https://openalex.org/W6885990028","https://openalex.org/W7099756213","https://openalex.org/W2896589336","https://openalex.org/W2131487299"],"abstract_inverted_index":{"Code":[0],"and":[1,14],"data":[2],"associated":[3],"with":[4],"the":[5,20],"manuscript":[6],"entitled":[7],"\"Evolutionary":[8],"Landscapes":[9],"of":[10],"Human":[11],"cis-regulatory":[12],"Elements":[13],"Transcription":[15],"Factor":[16],"Binding":[17],"Sites":[18],"in":[19],"Mammalian":[21],"Lineage\"":[22]},"counts_by_year":[{"year":2023,"cited_by_count":1}],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2024-04-03T00:00:00"}
