{"id":"https://openalex.org/W4393715528","doi":"https://doi.org/10.5281/zenodo.4916150","title":"Multiple Alternative Promoters and Alternative Splicing Enable Universal Transcription-Based Logic Computation in Mammalian Cells","display_name":"Multiple Alternative Promoters and Alternative Splicing Enable Universal Transcription-Based Logic Computation in Mammalian Cells","publication_year":2021,"publication_date":"2021-06-09","ids":{"openalex":"https://openalex.org/W4393715528","doi":"https://doi.org/10.5281/zenodo.4916150"},"language":"en","primary_location":{"id":"pmh:oai:figshare.com:article/14761558","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Multiple_Alternative_Promoters_and_Alternative_Splicing_Enable_Universal_Transcription-Based_Logic_Computation_in_Mammalian_Cells/14761558","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://figshare.com/articles/dataset/Multiple_Alternative_Promoters_and_Alternative_Splicing_Enable_Universal_Transcription-Based_Logic_Computation_in_Mammalian_Cells/14761558","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064483842","display_name":"Jiten Doshi","orcid":"https://orcid.org/0009-0002-2887-1943","observed_orcids":["https://orcid.org/0009-0002-2887-1943"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jiten Doshi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":null,"display_name":"Willis, Katie","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Willis, Katie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114142679","display_name":"Angela Madurga","orcid":"https://orcid.org/0000-0002-7673-0160","observed_orcids":["https://orcid.org/0000-0002-7673-0160"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Madurga, Angela","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078739522","display_name":"Christoph Stelzer","orcid":"https://orcid.org/0000-0003-2424-7887","observed_orcids":["https://orcid.org/0000-0003-2424-7887"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Stelzer, Christoph","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5072659013","display_name":"Yaakov Benenson","orcid":"https://orcid.org/0000-0003-1880-6507","observed_orcids":["https://orcid.org/0000-0003-1880-6507"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Benenson, Yaakov","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/alternative-promoter-usage","display_name":"alternative promoters","score":0.9539999961853027},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"alternative splicing","score":1.0},{"id":"https://openalex.org/keywords/synthetic-gene-circuits","display_name":"synthetic gene circuits","score":0.5329999923706055},{"id":"https://openalex.org/keywords/mammalian-cells","display_name":"mammalian cells","score":0.8650000095367432},{"id":"https://openalex.org/keywords/dna-sequences","display_name":"DNA sequences","score":0.49399998784065247},{"id":"https://openalex.org/keywords/plasmid-cloning","display_name":"plasmid cloning","score":0.6639999747276306},{"id":"https://openalex.org/keywords/sirna","display_name":"siRNA","score":0.7059999704360962}],"concepts":[{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.6595263481140137},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5328213572502136},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5154026746749878},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5080122947692871},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.4424365162849426},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40845394134521484},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40735575556755066},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36789679527282715},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.29773133993148804},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2073289453983307},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.13203087449073792},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09682449698448181},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.0804952085018158},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.06496265530586243}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:figshare.com:article/14761558","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Multiple_Alternative_Promoters_and_Alternative_Splicing_Enable_Universal_Transcription-Based_Logic_Computation_in_Mammalian_Cells/14761558","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},{"id":"pmh:oai:zenodo.org:4916151","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/4916151","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.4916150","doi":"https://doi.org/10.5281/zenodo.4916150","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.4916150","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.4916151","doi":"https://doi.org/10.5281/zenodo.4916151","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.4916151","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:figshare.com:article/14761558","doi":null,"is_oa":true,"landing_page_url":"https://figshare.com/articles/dataset/Multiple_Alternative_Promoters_and_Alternative_Splicing_Enable_Universal_Transcription-Based_Logic_Computation_in_Mammalian_Cells/14761558","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3188069240","https://openalex.org/W7100127295","https://openalex.org/W2169783149","https://openalex.org/W4405995685","https://openalex.org/W2062573403","https://openalex.org/W2072972630","https://openalex.org/W2121990728","https://openalex.org/W2901060305","https://openalex.org/W2183765132","https://openalex.org/W4281872996"],"abstract_inverted_index":{"Data":[0],"underlying":[1],"the":[2,5,38,69,89,115],"figures":[3],"in":[4,18,22,49,76,102],"publication":[6],"\u201cMultiple":[7],"Alternative":[8,11],"Promoters":[9],"and":[10,61,73,99],"Splicing":[12],"Enable":[13],"Universal":[14],"Transcription-Based":[15],"Logic":[16],"Computation":[17],"Mammalian":[19],"Cells\u201d,":[20],"published":[21],"Cell":[23],"Reports,":[24],"2020,":[25],"33,":[26],"108437.":[27],"https://doi.org/10.1016/j.celrep.2020.108437":[28],"Table":[29,33,64,84,110],"of":[30,41,71,91,93,117],"contents:":[31],"1.":[32],"1;":[34],"Excel":[35,66,86,112],"file":[36,67,87,113],"containing":[37,68,88,114],"DNA":[39,97],"sequences":[40,92],"modules":[42],"used":[43,75,101],"to":[44,53,80,106,124],"construct":[45],"genetic":[46],"logic":[47],"circuits":[48],"this":[50,77,103],"paper,":[51,78,104],"related":[52,79,105,123],"Figures":[54],"1,":[55],"2,":[56],"3,":[57],"4,":[58],"5,":[59],"6,":[60],"S2\u2013S6.":[62],"2.":[63],"2;":[65],"list":[70,90,116],"primers":[72],"siRNAs":[74],"STAR":[81,107,125],"Methods":[82],"3.":[83],"3;":[85],"gene":[94],"fragments,":[95],"synthetic":[96],"sequences,":[98],"gBlocks":[100],"Methods.":[108,126],"4.":[109],"4;":[111],"plasmids":[118],"with":[119],"their":[120],"cloning":[121],"procedures,":[122]},"counts_by_year":[],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2024-04-03T00:00:00"}
