{"id":"https://openalex.org/W4393666483","doi":"https://doi.org/10.5281/zenodo.6352947","title":"Dataset for Reference-free Isotropic Super-resolution For Volumetric Fluorescence Microscopy","display_name":"Dataset for Reference-free Isotropic Super-resolution For Volumetric Fluorescence Microscopy","publication_year":2022,"publication_date":"2022-03-14","ids":{"openalex":"https://openalex.org/W4393666483","doi":"https://doi.org/10.5281/zenodo.6352947"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.6352947","doi":"https://doi.org/10.5281/zenodo.6352947","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6352947","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"volume":null,"type":"dataset","is_traditional":false,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.6352947","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020449635","display_name":"Hyoungjun Park","orcid":"https://orcid.org/0000-0002-5403-4658","observed_orcids":["https://orcid.org/0000-0002-5403-4658"]},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Hyoungjun Park","raw_affiliation_strings":["Korea Advanced Institute of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korea Advanced Institute of Science and Technology","institution_ids":["https://openalex.org/I157485424"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021977381","display_name":"Myeongsu Na","orcid":"https://orcid.org/0000-0001-8826-100X","observed_orcids":["https://orcid.org/0000-0001-8826-100X"]},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Myeongsu Na","raw_affiliation_strings":["Seoul National University College of Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University College of Medicine","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069623840","display_name":"Bumju Kim","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Bumju Kim","raw_affiliation_strings":["Pohang University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100724801","display_name":"Soohyun Park","orcid":"https://orcid.org/0000-0003-4739-8573","observed_orcids":["https://orcid.org/0000-0003-4739-8573"]},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Soohyun Park","raw_affiliation_strings":["Pohang University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003825516","display_name":"Ki Hean Kim","orcid":"https://orcid.org/0000-0003-3410-7706","observed_orcids":["https://orcid.org/0000-0003-3410-7706"]},"institutions":[{"id":"https://openalex.org/I123900574","display_name":"Pohang University of Science and Technology","ror":"https://ror.org/04xysgw12","country_code":"KR","type":"education","lineage":["https://openalex.org/I123900574"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kim, Ki Hean","raw_affiliation_strings":["Pohang University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pohang University of Science and Technology","institution_ids":["https://openalex.org/I123900574"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046016624","display_name":"Sunghoe Chang","orcid":"https://orcid.org/0000-0002-3446-7288","observed_orcids":["https://orcid.org/0000-0002-3446-7288"]},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sunghoe Chang","raw_affiliation_strings":["Seoul National University College of Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University College of Medicine","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012644755","display_name":"Jong Chul Ye","orcid":"https://orcid.org/0000-0001-9763-9609","observed_orcids":["https://orcid.org/0000-0001-9763-9609"]},"institutions":[{"id":"https://openalex.org/I157485424","display_name":"Korea Advanced Institute of Science and Technology","ror":"https://ror.org/05apxxy63","country_code":"KR","type":"education","lineage":["https://openalex.org/I157485424"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ye, Jong Chul","raw_affiliation_strings":["Korea Advanced Institute of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Korea Advanced Institute of Science and Technology","institution_ids":["https://openalex.org/I157485424"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11105","display_name":"Advanced Image Processing Techniques","score":0.7416999936103821,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11105","display_name":"Advanced Image Processing Techniques","score":0.7416999936103821,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.21289999783039093,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.017999999225139618,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/confocal-fluorescence-microscopy","display_name":"confocal fluorescence microscopy","score":0.8450000286102295},{"id":"https://openalex.org/keywords/deep-learning","display_name":"deep learning","score":0.628000020980835},{"id":"https://openalex.org/keywords/artifact-removal","display_name":"artifact removal","score":0.7710000276565552}],"concepts":[{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6114100217819214},{"id":"https://openalex.org/C184050105","wikidata":"https://www.wikidata.org/wiki/Q273163","display_name":"Isotropy","level":2,"score":0.6009032726287842},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.5702298879623413},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.5457801222801208},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.5152149796485901},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.4338324964046478},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.42603498697280884},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.29922616481781006},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.28192275762557983},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24595415592193604},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22522151470184326},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.22332248091697693},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.21021303534507751}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.6352947","doi":"https://doi.org/10.5281/zenodo.6352947","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6352947","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.6352948","doi":"https://doi.org/10.5281/zenodo.6352948","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6352948","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.6352947","doi":"https://doi.org/10.5281/zenodo.6352947","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.6352947","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3166384617","https://openalex.org/W7216422670","https://openalex.org/W6893420438","https://openalex.org/W3155337546","https://openalex.org/W2904591139","https://openalex.org/W7131129601","https://openalex.org/W6969236719","https://openalex.org/W4415797486","https://openalex.org/W2920460225","https://openalex.org/W6902705327"],"abstract_inverted_index":{"Dataset":[0],"for":[1,12,132,140,148,156,171,175],"a":[2,52,56,96,100,167],"research":[3],"paper":[4,41],"titled":[5],"\"Deep":[6],"learning":[7],"enables":[8],"reference-free":[9],"isotropic":[10],"super-resolution":[11],"volumetric":[13],"fluorescence":[14,24],"microscopy\".":[15],"The":[16],"images":[17],"were":[18],"acquired":[19,80],"using":[20],"two":[21],"modalities:":[22],"confocal":[23],"microscopy":[25,30],"(CFM)":[26],"and":[27,67,111],"open-top":[28],"light-sheet":[29],"(OT-LSM).":[31],"For":[32,118],"details":[33],"about":[34],"the":[35,40,83,123],"imaging,":[36],"please":[37],"refer":[38],"to":[39,43,165],"(Link":[42],"be":[44],"uploaded":[45],"later).":[46],"A.":[47],"CFM":[48,49],"image":[50,74,79,94,131,139,147,155,169],"of":[51,55,70,95,99,120],"cortical":[53,97],"region":[54,98],"Thy":[57,101],"1-eYFP":[58,102],"mouse":[59,103],"brain.":[60,104],"Lateral":[61,105],"resolution":[62,106,113],"estimated":[63,107,114],"as":[64,108,115],"1.24":[65],"micron":[66,72,110],"Z-depth":[68],"interval":[69],"3":[71],"Input":[73,130,146,154],"[\"CFM_input_xy-view.tif]":[75],"[Figure":[76,89,136,177],"2]":[77,90],"Reference":[78],"by":[81,85],"rotating":[82],"sample":[84],"90":[86],"degrees":[87],"[\"CFM_rotated-and-registered_xz-view.tif']":[88],"B.":[91],"OT-LSM":[92,93],"0.5":[109],"axial":[112],"4.6":[116],"micron.":[117],"testing":[119],"artifact":[121,133],"correction,":[122],"microscope":[124],"was":[125],"poorly":[126],"calibrated":[127],"on":[128],"purpose.":[129],"correction":[134],"[\"OT-LSM_artifact-correction_input_volume_xy-view.tif\"]":[135],"4]":[137],"Ground-truth":[138],"artificial":[141,149],"blurring":[142,150],"[\"OT-LSM_artificial-blurring_GT.tif\"][Supplementary":[143],"Figure":[144,152],"14]":[145,153],"[\"OT-LSM_artificial-blurring_gau-z-blurred-std-10.tif\"][Supplementary":[151],"PSF":[157],"deconvolution":[158],"[\"input_volume_PSF-deconvolution.tif\"][Figure":[159],"3]":[160],"C.":[161],"Simulation":[162],"Jupyter":[163],"notebook":[164],"generate":[166],"3D":[168],"volume":[170],"simulation":[172],"[\"Data":[173],"Generator":[174],"Simulation.ipynb\"]":[176],"1]":[178]},"counts_by_year":[{"year":2022,"cited_by_count":1}],"updated_date":"2026-10-29T09:56:32.521200","created_date":"2024-04-03T00:00:00"}