{"id":"https://openalex.org/W4393628320","doi":"https://doi.org/10.5281/zenodo.4706037","title":"In Situ Chromatin Interaction Analysis Using Paired\u2010End Tag Sequencing","display_name":"In Situ Chromatin Interaction Analysis Using Paired\u2010End Tag Sequencing","publication_year":2021,"publication_date":"2021-04-20","ids":{"openalex":"https://openalex.org/W4393628320","doi":"https://doi.org/10.5281/zenodo.4706037"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:4706038","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/4706038","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/4706038","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5012882774","display_name":"Ping Wang","orcid":"https://orcid.org/0000-0002-2710-7188","observed_orcids":["https://orcid.org/0000-0002-2710-7188"]},"institutions":[{"id":"https://openalex.org/I4405260184","display_name":"The Jackson Laboratory for Genomic Medicine","ror":"https://ror.org/03cew3973","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wang, Ping","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine","institution_ids":["https://openalex.org/I4405260184"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062054124","display_name":"Yuliang Feng","orcid":"https://orcid.org/0000-0002-7997-163X","observed_orcids":["https://orcid.org/0000-0002-7997-163X","https://orcid.org/0000-0001-8079-3837"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Feng, Yuliang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064488224","display_name":"Kun Zhu","orcid":"https://orcid.org/0000-0001-7652-7640","observed_orcids":["https://orcid.org/0000-0001-7652-7640"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhu, Kun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054655241","display_name":"Haoxi Chai","orcid":"https://orcid.org/0000-0001-8626-1700","observed_orcids":["https://orcid.org/0000-0001-8626-1700"]},"institutions":[{"id":"https://openalex.org/I4405260184","display_name":"The Jackson Laboratory for Genomic Medicine","ror":"https://ror.org/03cew3973","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chai, Haoxi","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine","institution_ids":["https://openalex.org/I4405260184"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029285453","display_name":"Ya\u2010Ting Chang","orcid":"https://orcid.org/0000-0003-2580-4622","observed_orcids":["https://orcid.org/0000-0003-2580-4622"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chang, Ya-ting","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101803524","display_name":"Xiyuan Liu","orcid":"https://orcid.org/0000-0001-5277-5754","observed_orcids":["https://orcid.org/0000-0001-5277-5754","https://orcid.org/0000-0003-0319-2813"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Liu, Xiyuan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018011224","display_name":"Chen Shen","orcid":"https://orcid.org/0000-0002-7119-8443","observed_orcids":["https://orcid.org/0000-0002-7119-8443"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Shen, Chen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5094339211","display_name":"Eva Gaga","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405260184","display_name":"The Jackson Laboratory for Genomic Medicine","ror":"https://ror.org/03cew3973","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gaga, Eva","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine","institution_ids":["https://openalex.org/I4405260184"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030211608","display_name":"Byoungkoo Lee","orcid":"https://orcid.org/0000-0002-0067-9944","observed_orcids":["https://orcid.org/0000-0002-0067-9944"]},"institutions":[{"id":"https://openalex.org/I4405260184","display_name":"The Jackson Laboratory for Genomic Medicine","ror":"https://ror.org/03cew3973","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lee, Byoungkoo","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine"],"raw_orcid":"https://orcid.org/0000-0002-0067-9944","affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine","institution_ids":["https://openalex.org/I4405260184"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100317754","display_name":"Minji Kim","orcid":"https://orcid.org/0000-0002-7282-8224","observed_orcids":["https://orcid.org/0000-0002-7282-8224","https://orcid.org/0000-0002-4525-7542"]},"institutions":[{"id":"https://openalex.org/I4405260184","display_name":"The Jackson Laboratory for Genomic Medicine","ror":"https://ror.org/03cew3973","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256","https://openalex.org/I4405260184"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kim, Minji","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine","institution_ids":["https://openalex.org/I4405260184"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110170943","display_name":"Xiaoan Ruan","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruan, Xiaoan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5028790437","display_name":"Yijun Ruan","orcid":"https://orcid.org/0000-0001-5881-569X","observed_orcids":["https://orcid.org/0000-0001-5881-569X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ruan, Yijun","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12820","display_name":"Chromatin Remodeling and Cancer","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin-interactions","display_name":"chromatin interactions","score":0.6079999804496765},{"id":"https://openalex.org/keywords/chia-pet","display_name":"ChIA-PET","score":0.8980000019073486},{"id":"https://openalex.org/keywords/rna-polymerase-ii","display_name":"RNA polymerase II","score":0.906000018119812},{"id":"https://openalex.org/keywords/drosophila-melanogaster","display_name":"Drosophila melanogaster","score":0.8389999866485596},{"id":"https://openalex.org/keywords/bioinformatics-pipeline","display_name":"bioinformatics pipeline","score":0.7770000100135803}],"concepts":[{"id":"https://openalex.org/C2777822432","wikidata":"https://www.wikidata.org/wiki/Q216681","display_name":"In situ","level":2,"score":0.6529778242111206},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5378128290176392},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.43673843145370483},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3849923014640808},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3802843987941742},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2971818447113037},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2846564054489136},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.14318886399269104},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:zenodo.org:4706038","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/4706038","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.4706037","doi":"https://doi.org/10.5281/zenodo.4706037","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.4706037","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.4706038","doi":"https://doi.org/10.5281/zenodo.4706038","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.4706038","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:4706038","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/4706038","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2031057223","https://openalex.org/W4255775593","https://openalex.org/W2914156189","https://openalex.org/W1647351310","https://openalex.org/W2523349726","https://openalex.org/W2519241029","https://openalex.org/W1554081978","https://openalex.org/W3042010229","https://openalex.org/W2355636096","https://openalex.org/W2963347990"],"abstract_inverted_index":{"In":[0],"situ":[1],"ChIA-PET,":[2],"fastq":[3],"files":[4],"for":[5],"testing":[6],"bioinformatic":[7],"pipeline.":[8],"Library":[9],"ID:":[10],"LDK0004-L":[11],"Sequencing":[12],"platform:":[13],"Miseq-2X150bp":[14],"Cell":[15],"line:":[16],"KC167":[17],"IP-factor:":[18],"RNAPII":[19],"Reference":[20],"genome,":[21],"as":[22],"a":[23],"suggestion:":[24],"dm3":[25]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2}],"updated_date":"2026-10-16T09:59:22.235173","created_date":"2024-04-03T00:00:00"}
