{"id":"https://openalex.org/W4393545144","doi":"https://doi.org/10.5281/zenodo.7968233","title":"TMI cheese metagenomics sourmash output files","display_name":"TMI cheese metagenomics sourmash output files","publication_year":2023,"publication_date":"2023-05-24","ids":{"openalex":"https://openalex.org/W4393545144","doi":"https://doi.org/10.5281/zenodo.7968233"},"language":"en","primary_location":{"id":"pmh:oai:zenodo.org:7968234","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7968234","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/7968234","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054569188","display_name":"Elizabeth McDaniel","orcid":"https://orcid.org/0000-0003-4692-0913","observed_orcids":["https://orcid.org/0000-0003-4692-0913"]},"institutions":[{"id":"https://openalex.org/I4387153020","display_name":"Arcadia Science","ror":"https://ror.org/052zd4v68","country_code":"US","type":"company","lineage":["https://openalex.org/I4387153020"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"McDaniel, Elizabeth","raw_affiliation_strings":["Arcadia Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arcadia Science","institution_ids":["https://openalex.org/I4387153020"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Weiss, Emily","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4387153020","display_name":"Arcadia Science","ror":"https://ror.org/052zd4v68","country_code":"US","type":"company","lineage":["https://openalex.org/I4387153020"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weiss, Emily","raw_affiliation_strings":["Arcadia Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arcadia Science","institution_ids":["https://openalex.org/I4387153020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088939514","display_name":"Rachel J. Dutton","orcid":"https://orcid.org/0000-0002-2944-2182","observed_orcids":["https://orcid.org/0000-0002-2944-2182"]},"institutions":[{"id":"https://openalex.org/I4387153020","display_name":"Arcadia Science","ror":"https://ror.org/052zd4v68","country_code":"US","type":"company","lineage":["https://openalex.org/I4387153020"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dutton, Rachel","raw_affiliation_strings":["Arcadia Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arcadia Science","institution_ids":["https://openalex.org/I4387153020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064945486","display_name":"Adair Borges","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4387153020","display_name":"Arcadia Science","ror":"https://ror.org/052zd4v68","country_code":"US","type":"company","lineage":["https://openalex.org/I4387153020"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Borges, Adair","raw_affiliation_strings":["Arcadia Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arcadia Science","institution_ids":["https://openalex.org/I4387153020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008973951","display_name":"Taylor E. Reiter","orcid":"https://orcid.org/0000-0002-7388-421X","observed_orcids":["https://orcid.org/0000-0002-7388-421X"]},"institutions":[{"id":"https://openalex.org/I4387153020","display_name":"Arcadia Science","ror":"https://ror.org/052zd4v68","country_code":"US","type":"company","lineage":["https://openalex.org/I4387153020"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Reiter, Taylor","raw_affiliation_strings":["Arcadia Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Arcadia Science","institution_ids":["https://openalex.org/I4387153020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I4387153020"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9291999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9291999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.009399999864399433,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.006500000134110451,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cheese-rind","display_name":"cheese rind","score":0.781000018119812},{"id":"https://openalex.org/keywords/microbial-communities","display_name":"microbial communities","score":0.8830000162124634},{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.9319999814033508},{"id":"https://openalex.org/keywords/long-read-sequencing","display_name":"long-read sequencing","score":0.8519999980926514},{"id":"https://openalex.org/keywords/short-read-sequencing","display_name":"short-read sequencing","score":0.9890000224113464},{"id":"https://openalex.org/keywords/microbial-taxonomy","display_name":"microbial taxonomy","score":0.6380000114440918}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8916550874710083},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29436632990837097},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08598417043685913},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.03769350051879883}],"mesh":[],"locations_count":3,"locations":[{"id":"pmh:oai:zenodo.org:7968234","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7968234","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},{"id":"doi:10.5281/zenodo.7968233","doi":"https://doi.org/10.5281/zenodo.7968233","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7968233","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.7968234","doi":"https://doi.org/10.5281/zenodo.7968234","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.7968234","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:7968234","doi":null,"is_oa":true,"landing_page_url":"https://zenodo.org/record/7968234","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W6894264071","https://openalex.org/W6936221502","https://openalex.org/W6931698766","https://openalex.org/W6887741688","https://openalex.org/W4206876303","https://openalex.org/W7169828530","https://openalex.org/W7223070469","https://openalex.org/W7221773958","https://openalex.org/W4313857704","https://openalex.org/W4289549003"],"abstract_inverted_index":{"Sourmash":[0],"output":[1],"files":[2],"from":[3],"signature":[4],"sketches,":[5],"compare,":[6],"gather,":[7],"and":[8,18,31,59,67],"taxonomy":[9],"of":[10,26,34,45],"time-series":[11],"cheese":[12,35],"metagenomes":[13],"generated":[14,23],"using":[15,76],"both":[16],"short-":[17],"long-read":[19],"sequencing":[20],"technologies.":[21],"Originally":[22],"as":[24],"part":[25],"the":[27,61,64,70,77,81,85],"pub":[28],"\"Paired":[29],"long-":[30],"short-read":[32],"metagenomics":[33],"rind":[36],"microbial":[37],"communities":[38],"at":[39,51],"multiple":[40],"time":[41],"points\".":[42],"Analysis":[43],"code":[44],"this":[46,56],"data":[47],"provided":[48],"on":[49],"Github":[50,65],"https://github.com/Arcadia-Science/metagenomics-of-cheese-rind-microbiomes.":[52],"To":[53],"directly":[54],"analyze":[55],"data,":[57],"download":[58],"unzip":[60],"tarball.":[62],"Clone":[63],"repository":[66],"point":[68],"to":[69],"2023-05-23-TMI-processed-data":[71],"directory":[72],"within":[73],"a":[74],"project":[75],"`scripts/TMI-sourmash-explore.R`":[78],"script.":[79],"Install":[80],"packages":[82],"used":[83],"in":[84],"script":[86],"if":[87],"necessary.":[88]},"counts_by_year":[],"updated_date":"2026-10-08T09:06:37.294493","created_date":"2024-04-03T00:00:00"}